Strain Fitness in Shewanella amazonensis SB2B around Sama_3278

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
3,892,202	+		Sama_3277	0.31	-2.7
3,892,202	+		Sama_3277	0.31	-0.5
3,892,202	+		Sama_3277	0.31	-2.4
3,892,203	-		Sama_3277	0.31	-0.6
3,892,203	-		Sama_3277	0.31	+3.9
3,892,203	-		Sama_3277	0.31	-1.0
3,892,203	-		Sama_3277	0.31	-1.3
3,892,203	-		Sama_3277	0.31	-1.3
3,892,203	-		Sama_3277	0.31	-0.3
3,892,225	-		Sama_3277	0.33	-2.0
3,892,232	+		Sama_3277	0.33	-1.5
3,892,317	+		Sama_3277	0.41	-0.5
3,892,317	+		Sama_3277	0.41	-1.5
3,892,317	+		Sama_3277	0.41	+1.5
3,892,317	+		Sama_3277	0.41	+2.5
3,892,317	+		Sama_3277	0.41	-0.8
3,892,318	-		Sama_3277	0.41	+4.3
3,892,318	-		Sama_3277	0.41	-0.7
3,892,318	-		Sama_3277	0.41	+0.2
3,892,327	+		Sama_3277	0.42	+0.8
3,892,357	+		Sama_3277	0.44	-0.5
3,892,375	+		Sama_3277	0.46	+1.2
3,892,375	+		Sama_3277	0.46	-0.9
3,892,376	-		Sama_3277	0.46	-1.4
3,892,398	-		Sama_3277	0.48	-0.1
3,892,408	+		Sama_3277	0.49	+1.9
3,892,408	+		Sama_3277	0.49	-0.2
3,892,408	+		Sama_3277	0.49	+0.9
3,892,408	+		Sama_3277	0.49	+2.0
3,892,408	+		Sama_3277	0.49	+0.4
3,892,408	+		Sama_3277	0.49	-0.1
3,892,408	+		Sama_3277	0.49	-2.4
3,892,409	-		Sama_3277	0.49	-2.3
3,892,409	-		Sama_3277	0.49	+0.1
3,892,409	-		Sama_3277	0.49	+0.3
3,892,409	-		Sama_3277	0.49	-0.3
3,892,409	-		Sama_3277	0.49	-1.8
3,892,409	-		Sama_3277	0.49	+0.1
3,892,409	-		Sama_3277	0.49	-2.3
3,892,409	-		Sama_3277	0.49	+2.2
3,892,409	-		Sama_3277	0.49	+0.5
3,892,409	-		Sama_3277	0.49	+0.0
3,892,409	-		Sama_3277	0.49	-1.0
3,892,409	-		Sama_3277	0.49	-0.2
3,892,479	+		Sama_3277	0.55	-1.7
3,892,479	+		Sama_3277	0.55	-1.7
3,892,479	+		Sama_3277	0.55	-0.7
3,892,479	+		Sama_3277	0.55	-3.2
3,892,559	+		Sama_3277	0.62	-0.0
3,892,560	-		Sama_3277	0.62	-2.6
3,892,560	-		Sama_3277	0.62	-1.6
3,892,560	-		Sama_3277	0.62	-2.3
3,892,738	+		Sama_3277	0.78	-1.4
3,892,738	+		Sama_3277	0.78	-0.5
3,892,739	-		Sama_3277	0.78	+0.6
3,892,815	-		Sama_3277	0.85	+1.5
3,892,815	-		Sama_3277	0.85	-0.7
3,892,815	-		Sama_3277	0.85	-0.5
3,892,911	-				-2.0
3,892,941	+				+0.2
3,892,941	+				-1.2
3,892,942	-				+1.3
3,892,956	+				-0.1
3,892,957	-				+1.2
3,892,966	+				-1.5
3,892,966	+				+0.4
3,892,966	+				-0.1
3,892,967	-				-0.5
3,892,999	+				-2.0
3,892,999	+				-0.3
3,892,999	+				-1.3
3,892,999	+				-0.3
3,892,999	+				+0.3
3,893,000	-				+0.1
3,893,000	-				+0.4
3,893,000	-				+0.5
3,893,035	+				-0.1
3,893,036	-				+0.4
3,893,056	+				+1.1
3,893,056	+				+3.7
3,893,056	+				+1.5
3,893,056	+				-2.2
3,893,056	+				+0.4
3,893,056	+				+0.0
3,893,056	+				+1.1
3,893,057	-				-3.0
3,893,057	-				+1.3
3,893,057	-				+0.7
3,893,057	-				+1.9
3,893,061	+				+2.0
3,893,062	-				+0.9
3,893,066	+				-1.0
3,893,066	+				-1.2
3,893,066	+				-1.3
3,893,066	+				-0.9
3,893,067	-				-2.5
3,893,067	-				-1.2
3,893,067	-				+1.7
3,893,067	-				-3.0
3,893,067	-				+1.1
3,893,067	-				-0.3
3,893,067	-				-2.1
3,893,075	+				-2.0
3,893,076	-				+0.3
3,893,078	+				-0.5
3,893,078	+				-0.0
3,893,079	-				-0.3
3,893,100	-				+2.0
3,893,100	-				-0.6
3,893,117	+				-1.0
3,893,117	+				-1.6
3,893,117	+				+2.8
3,893,117	+				-1.0
3,893,118	-				+1.1
3,893,118	-				-0.5
3,893,118	-				-0.2
3,893,118	-				-1.3
3,893,121	+				-1.5
3,893,121	+				+1.9
3,893,121	+				+0.8
3,893,121	+				+1.4
3,893,122	-				+1.8
3,893,122	-				-0.5
3,893,122	-				-0.0
3,893,122	-				+2.6
3,893,125	+				-1.7
3,893,126	-				-2.2
3,893,126	-				-1.1
3,893,126	-				+0.4
3,893,293	-		Sama_3278	0.11	-2.4
3,893,319	-		Sama_3278	0.12	-2.9
3,893,319	-		Sama_3278	0.12	-2.0
3,893,326	+		Sama_3278	0.13	-1.1
3,893,326	+		Sama_3278	0.13	-3.4
3,893,407	+		Sama_3278	0.18	-0.6
3,893,407	+		Sama_3278	0.18	-2.4
3,893,407	+		Sama_3278	0.18	-2.3
3,893,407	+		Sama_3278	0.18	-1.2
3,893,407	+		Sama_3278	0.18	-2.5
3,893,407	+		Sama_3278	0.18	-1.6
3,893,407	+		Sama_3278	0.18	-3.9
3,893,408	-		Sama_3278	0.18	-2.2
3,893,408	-		Sama_3278	0.18	-1.5
3,893,408	-		Sama_3278	0.18	-1.3
3,893,408	-		Sama_3278	0.18	-3.1
3,893,409	+		Sama_3278	0.18	-2.8
3,893,409	+		Sama_3278	0.18	-2.4
3,893,409	+		Sama_3278	0.18	-3.0
3,893,409	+		Sama_3278	0.18	-1.4
3,893,409	+		Sama_3278	0.18	-1.8
3,893,409	+		Sama_3278	0.18	-1.4
3,893,409	+		Sama_3278	0.18	-3.2
3,893,410	-		Sama_3278	0.18	-1.4
3,893,410	-		Sama_3278	0.18	-1.9
3,893,410	-		Sama_3278	0.18	-1.2
3,893,410	-		Sama_3278	0.18	-3.5
3,893,410	-		Sama_3278	0.18	-0.1
3,893,410	-		Sama_3278	0.18	+0.3
3,893,410	-		Sama_3278	0.18	-3.6
3,893,444	+		Sama_3278	0.20	-1.5
3,893,445	-		Sama_3278	0.20	+1.5
3,893,494	+		Sama_3278	0.23	-2.7
3,893,495	-		Sama_3278	0.23	-3.6
3,893,566	-		Sama_3278	0.28	-1.2
3,893,566	-		Sama_3278	0.28	-3.2
3,893,611	+		Sama_3278	0.31	-1.4
3,893,694	+		Sama_3278	0.36	-0.9
3,893,694	+		Sama_3278	0.36	+1.9
3,893,695	-		Sama_3278	0.36	-0.3
3,893,695	-		Sama_3278	0.36	-2.0
3,893,695	-		Sama_3278	0.36	-2.5
3,893,695	-		Sama_3278	0.36	-0.6
3,893,695	-		Sama_3278	0.36	-1.0
3,893,695	-		Sama_3278	0.36	-0.3
3,893,797	-		Sama_3278	0.42	-1.4
3,893,863	+		Sama_3278	0.47	-3.8
3,893,864	-		Sama_3278	0.47	-2.1
3,893,864	-		Sama_3278	0.47	-2.1
3,893,919	+		Sama_3278	0.50	-2.9
3,893,919	+		Sama_3278	0.50	-2.5
3,893,919	+		Sama_3278	0.50	-2.4
3,893,919	+		Sama_3278	0.50	-3.0
3,893,919	+		Sama_3278	0.50	-2.7
3,893,920	-		Sama_3278	0.50	-2.4
3,893,920	-		Sama_3278	0.50	-3.2
3,893,920	-		Sama_3278	0.50	-2.0
3,893,920	-		Sama_3278	0.50	-1.7
3,893,920	-		Sama_3278	0.50	-1.1
3,893,997	-		Sama_3278	0.55	-4.3
3,894,031	+		Sama_3278	0.57	-2.4
3,894,031	+		Sama_3278	0.57	-2.3
3,894,031	+		Sama_3278	0.57	-1.8
3,894,031	+		Sama_3278	0.57	-1.1
3,894,093	+		Sama_3278	0.61	-3.6
3,894,093	+		Sama_3278	0.61	-0.1
3,894,093	+		Sama_3278	0.61	-3.0
3,894,093	+		Sama_3278	0.61	-0.3
3,894,094	-		Sama_3278	0.61	-0.7
3,894,094	-		Sama_3278	0.61	-1.3
3,894,094	-		Sama_3278	0.61	-2.0
3,894,094	-		Sama_3278	0.61	-1.5
3,894,094	-		Sama_3278	0.61	-2.7
3,894,094	-		Sama_3278	0.61	-3.0
3,894,094	-		Sama_3278	0.61	-1.0
3,894,094	-		Sama_3278	0.61	-1.3
3,894,096	+		Sama_3278	0.61	-2.2
3,894,096	+		Sama_3278	0.61	-3.5
3,894,096	+		Sama_3278	0.61	-3.2
3,894,097	-		Sama_3278	0.61	-2.1
3,894,097	-		Sama_3278	0.61	-2.0
3,894,097	-		Sama_3278	0.61	-4.1
3,894,143	+		Sama_3278	0.64	-3.3
3,894,143	+		Sama_3278	0.64	-1.3
3,894,144	-		Sama_3278	0.64	-0.3
3,894,144	-		Sama_3278	0.64	-1.8
3,894,144	-		Sama_3278	0.64	-1.6
3,894,232	+		Sama_3278	0.70	-1.8
3,894,233	-		Sama_3278	0.70	-0.8
3,894,234	+		Sama_3278	0.70	-0.1
3,894,234	+		Sama_3278	0.70	-0.2
3,894,235	-		Sama_3278	0.70	-1.8
3,894,235	-		Sama_3278	0.70	-1.7
3,894,235	-		Sama_3278	0.70	-4.0
3,894,235	-		Sama_3278	0.70	-3.3
3,894,235	-		Sama_3278	0.70	-2.7
3,894,235	-		Sama_3278	0.70	-1.8
3,894,235	-		Sama_3278	0.70	-2.0
3,894,371	+		Sama_3278	0.78	-3.0
3,894,371	+		Sama_3278	0.78	-1.7
3,894,372	-		Sama_3278	0.78	-2.0
3,894,372	-		Sama_3278	0.78	-2.8
3,894,372	-		Sama_3278	0.78	-2.3
3,894,372	-		Sama_3278	0.78	-1.5
3,894,372	-		Sama_3278	0.78	-3.6
3,894,372	-		Sama_3278	0.78	-2.1
3,894,443	+		Sama_3278	0.83	-1.2
3,894,444	-		Sama_3278	0.83	-1.8
3,894,492	+		Sama_3278	0.86	-0.6
3,894,493	-		Sama_3278	0.86	-1.3
3,894,493	-		Sama_3278	0.86	-3.1
3,894,493	-		Sama_3278	0.86	-1.8
3,894,508	+		Sama_3278	0.87	-0.7
3,894,542	+		Sama_3278	0.89	-3.3
3,894,546	+		Sama_3278	0.89	-0.9
3,894,546	+		Sama_3278	0.89	-2.2
3,894,546	+		Sama_3278	0.89	-3.7
3,894,547	-		Sama_3278	0.89	-0.8
3,894,547	-		Sama_3278	0.89	-1.7
3,894,615	+				+0.6
3,894,615	+				-2.1
3,894,615	+				-0.5
3,894,615	+				-0.6
3,894,615	+				+0.3
3,894,615	+				-1.7
3,894,616	-				-3.5
3,894,616	-				-2.9
3,894,616	-				-2.7
3,894,616	-				-0.1
3,894,616	-				-1.3
3,894,616	-				-0.8
3,894,645	+				-1.6
3,894,645	+				+1.9
3,894,645	+				+0.5
3,894,646	-				-1.4
3,894,646	-				-0.5
3,894,646	-				-3.0
3,894,646	-				+0.5
3,894,646	-				-3.3
3,894,648	+				-2.6
3,894,648	+				+0.5
3,894,648	+				-2.3
3,894,649	-				-3.8
3,894,682	+				-1.7
3,894,682	+				-0.9
3,894,682	+				-1.0
3,894,683	-				+2.1
3,894,683	-				-3.5
3,894,683	-				+1.4
3,894,781	+				-0.1
3,894,781	+				-2.1
3,894,781	+				-2.3
3,894,782	-				-3.1
3,894,782	-				-2.9
3,894,782	-				-1.7
3,894,782	-				-3.0
3,894,782	-				-2.6
3,894,930	-		Sama_3279	0.11	-3.7
3,894,954	+		Sama_3279	0.13	-3.6
3,894,954	+		Sama_3279	0.13	-0.7
3,894,955	-		Sama_3279	0.13	-0.8
3,894,955	-		Sama_3279	0.13	-3.7
3,894,955	-		Sama_3279	0.13	-2.1
3,895,071	+		Sama_3279	0.19	-0.9
3,895,075	+		Sama_3279	0.19	-0.9
3,895,075	+		Sama_3279	0.19	-2.9
3,895,076	-		Sama_3279	0.19	-0.8
3,895,088	-		Sama_3279	0.20	+0.1
3,895,204	+		Sama_3279	0.26	-1.9
3,895,204	+		Sama_3279	0.26	-0.9
3,895,204	+		Sama_3279	0.26	-0.3
3,895,204	+		Sama_3279	0.26	-1.5
3,895,204	+		Sama_3279	0.26	-0.7
3,895,204	+		Sama_3279	0.26	-1.9
3,895,204	+		Sama_3279	0.26	-1.7
3,895,205	-		Sama_3279	0.26	+0.1
3,895,205	-		Sama_3279	0.26	-0.8
3,895,205	-		Sama_3279	0.26	-2.9
3,895,205	-		Sama_3279	0.26	-3.5
3,895,205	-		Sama_3279	0.26	-2.4
3,895,205	-		Sama_3279	0.26	-3.0
3,895,205	-		Sama_3279	0.26	-2.7
3,895,205	-		Sama_3279	0.26	-0.9
3,895,205	-		Sama_3279	0.26	-1.3
3,895,205	-		Sama_3279	0.26	-3.7
3,895,206	+		Sama_3279	0.26	-1.8
3,895,206	+		Sama_3279	0.26	+1.3
3,895,206	+		Sama_3279	0.26	-2.4
3,895,206	+		Sama_3279	0.26	+0.5
3,895,206	+		Sama_3279	0.26	-0.6
3,895,207	-		Sama_3279	0.26	-1.3
3,895,207	-		Sama_3279	0.26	-1.7
3,895,207	-		Sama_3279	0.26	-1.5
3,895,207	-		Sama_3279	0.26	-3.5
3,895,207	-		Sama_3279	0.26	-0.1
3,895,207	-		Sama_3279	0.26	-1.1
3,895,265	+		Sama_3279	0.30	-0.7
3,895,374	-		Sama_3279	0.35	-2.7
3,895,409	+		Sama_3279	0.37	-1.7
3,895,410	-		Sama_3279	0.37	-0.5
3,895,410	-		Sama_3279	0.37	-1.0
3,895,527	+		Sama_3279	0.44	-0.6
3,895,527	+		Sama_3279	0.44	-1.0
3,895,527	+		Sama_3279	0.44	-2.3
3,895,527	+		Sama_3279	0.44	-2.0
3,895,527	+		Sama_3279	0.44	-1.1
3,895,527	+		Sama_3279	0.44	-2.3
3,895,528	-		Sama_3279	0.44	+0.5
3,895,528	-		Sama_3279	0.44	-1.7
3,895,528	-		Sama_3279	0.44	-2.3
3,895,528	-		Sama_3279	0.44	-1.2
3,895,528	-		Sama_3279	0.44	-3.1
3,895,528	-		Sama_3279	0.44	-0.8
3,895,528	-		Sama_3279	0.44	-2.6
3,895,528	-		Sama_3279	0.44	-0.9
3,895,528	-		Sama_3279	0.44	-3.3
3,895,578	+		Sama_3279	0.46	-2.4
3,895,578	+		Sama_3279	0.46	-1.9
3,895,579	-		Sama_3279	0.46	-1.5
3,895,579	-		Sama_3279	0.46	-3.0
3,895,579	-		Sama_3279	0.46	-2.6
3,895,579	-		Sama_3279	0.46	-2.8
3,895,579	-		Sama_3279	0.46	-1.9
3,895,608	-		Sama_3279	0.48	-1.1
3,895,608	-		Sama_3279	0.48	-1.7
3,895,612	+		Sama_3279	0.48	-4.0
3,895,612	+		Sama_3279	0.48	-2.1
3,895,612	+		Sama_3279	0.48	-0.9
3,895,612	+		Sama_3279	0.48	-2.5
3,895,612	+		Sama_3279	0.48	-0.1
3,895,612	+		Sama_3279	0.48	-1.7
3,895,612	+		Sama_3279	0.48	-2.7
3,895,612	+		Sama_3279	0.48	-2.8
3,895,613	-		Sama_3279	0.48	-1.9
3,895,613	-		Sama_3279	0.48	-4.1
3,895,613	-		Sama_3279	0.48	-1.5
3,895,613	-		Sama_3279	0.48	-0.9
3,895,613	-		Sama_3279	0.48	-1.2
3,895,613	-		Sama_3279	0.48	-6.8
3,895,613	-		Sama_3279	0.48	-2.0
3,895,622	+		Sama_3279	0.49	-3.0
3,895,622	+		Sama_3279	0.49	-2.4