Strain Fitness in Shewanella amazonensis SB2B around Sama_3125

Experiment: L-Histidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgroEL and groES are separated by 55 nucleotidesgroES and Sama_3126 are separated by 228 nucleotides Sama_3124: groEL - chaperonin GroEL (RefSeq), at 3,704,504 to 3,706,141 groEL Sama_3125: groES - co-chaperonin GroES (RefSeq), at 3,706,197 to 3,706,487 groES Sama_3126: Sama_3126 - MATE efflux family protein (RefSeq), at 3,706,716 to 3,708,083 _3126 Position (kb) 3706 3707Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3706.199 kb on - strandat 3706.199 kb on - strandat 3706.207 kb on - strandat 3706.207 kb on - strandat 3706.580 kb on - strandat 3706.580 kb on - strandat 3706.580 kb on - strandat 3706.580 kb on - strandat 3706.580 kb on - strandat 3706.580 kb on - strandat 3706.580 kb on - strandat 3706.580 kb on - strandat 3706.580 kb on - strandat 3706.580 kb on - strandat 3706.582 kb on - strandat 3706.582 kb on - strandat 3706.674 kb on - strandat 3706.674 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
remove
3,706,199 - -0.5
3,706,199 - +0.3
3,706,207 - +0.3
3,706,207 - +0.5
3,706,580 - +1.3
3,706,580 - +0.7
3,706,580 - +1.6
3,706,580 - -0.9
3,706,580 - +0.9
3,706,580 - +0.5
3,706,580 - +0.5
3,706,580 - +5.4
3,706,580 - -0.3
3,706,580 - -2.4
3,706,582 - -0.1
3,706,582 - +0.0
3,706,674 - +0.8
3,706,674 - -0.7

Or see this region's nucleotide sequence