Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2924 and Sama_2925 are separated by 199 nucleotides Sama_2925 and Sama_2926 are separated by 48 nucleotides Sama_2926 and Sama_2927 overlap by 1 nucleotides Sama_2927 and Sama_2928 are separated by 103 nucleotides
Sama_2924: Sama_2924 - alkaline phosphatase, putative (RefSeq), at 3,478,408 to 3,480,177
_2924
Sama_2925: Sama_2925 - CBS domain-containing protein (RefSeq), at 3,480,377 to 3,480,796
_2925
Sama_2926: Sama_2926 - hypothetical protein (RefSeq), at 3,480,845 to 3,481,534
_2926
Sama_2927: Sama_2927 - holin-like protein (RefSeq), at 3,481,534 to 3,481,965
_2927
Sama_2928: Sama_2928 - LysR family transcriptional regulator (RefSeq), at 3,482,069 to 3,482,959
_2928
Position (kb)
3480
3481
3482 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3479.876 kb on + strand, within Sama_2924 at 3479.876 kb on + strand, within Sama_2924 at 3479.877 kb on - strand, within Sama_2924 at 3479.889 kb on + strand, within Sama_2924 at 3479.889 kb on + strand, within Sama_2924 at 3479.889 kb on + strand, within Sama_2924 at 3479.889 kb on + strand, within Sama_2924 at 3480.164 kb on + strand at 3480.165 kb on - strand at 3480.178 kb on + strand at 3480.179 kb on - strand at 3480.179 kb on - strand at 3480.181 kb on + strand at 3480.182 kb on - strand at 3480.184 kb on + strand at 3480.184 kb on + strand at 3480.196 kb on + strand at 3480.196 kb on + strand at 3480.196 kb on + strand at 3480.196 kb on + strand at 3480.196 kb on + strand at 3480.196 kb on + strand at 3480.197 kb on - strand at 3480.198 kb on + strand at 3480.198 kb on + strand at 3480.198 kb on + strand at 3480.198 kb on + strand at 3480.198 kb on + strand at 3480.198 kb on + strand at 3480.198 kb on + strand at 3480.199 kb on - strand at 3480.199 kb on - strand at 3480.199 kb on - strand at 3480.207 kb on + strand at 3480.207 kb on + strand at 3480.207 kb on + strand at 3480.207 kb on + strand at 3480.207 kb on + strand at 3480.207 kb on + strand at 3480.207 kb on + strand at 3480.208 kb on - strand at 3480.208 kb on - strand at 3480.208 kb on - strand at 3480.208 kb on - strand at 3480.208 kb on - strand at 3480.208 kb on - strand at 3480.208 kb on - strand at 3480.239 kb on + strand at 3480.240 kb on - strand at 3480.242 kb on + strand at 3480.243 kb on - strand at 3480.243 kb on - strand at 3480.268 kb on - strand at 3480.317 kb on + strand at 3480.317 kb on + strand at 3480.317 kb on + strand at 3480.317 kb on + strand at 3480.317 kb on + strand at 3480.317 kb on + strand at 3480.317 kb on + strand at 3480.376 kb on + strand at 3480.376 kb on + strand at 3480.376 kb on + strand at 3480.376 kb on + strand at 3480.377 kb on - strand at 3480.377 kb on - strand at 3480.385 kb on + strand at 3480.489 kb on + strand, within Sama_2925 at 3480.490 kb on - strand, within Sama_2925 at 3480.490 kb on - strand, within Sama_2925 at 3480.509 kb on + strand, within Sama_2925 at 3480.509 kb on + strand, within Sama_2925 at 3480.510 kb on - strand, within Sama_2925 at 3480.510 kb on - strand, within Sama_2925 at 3480.510 kb on - strand, within Sama_2925 at 3480.569 kb on + strand, within Sama_2925 at 3480.569 kb on + strand, within Sama_2925 at 3480.569 kb on + strand, within Sama_2925 at 3480.569 kb on + strand, within Sama_2925 at 3480.569 kb on + strand, within Sama_2925 at 3480.569 kb on + strand, within Sama_2925 at 3480.569 kb on + strand, within Sama_2925 at 3480.569 kb on + strand, within Sama_2925 at 3480.569 kb on + strand, within Sama_2925 at 3480.570 kb on - strand, within Sama_2925 at 3480.570 kb on - strand, within Sama_2925 at 3480.605 kb on + strand, within Sama_2925 at 3480.605 kb on + strand, within Sama_2925 at 3480.605 kb on + strand, within Sama_2925 at 3480.606 kb on - strand, within Sama_2925 at 3480.628 kb on + strand, within Sama_2925 at 3480.629 kb on - strand, within Sama_2925 at 3480.629 kb on - strand, within Sama_2925 at 3480.680 kb on + strand, within Sama_2925 at 3480.681 kb on - strand, within Sama_2925 at 3480.681 kb on - strand, within Sama_2925 at 3480.685 kb on + strand, within Sama_2925 at 3480.686 kb on - strand, within Sama_2925 at 3480.686 kb on - strand, within Sama_2925 at 3480.686 kb on - strand, within Sama_2925 at 3480.686 kb on - strand, within Sama_2925 at 3480.735 kb on + strand, within Sama_2925 at 3480.735 kb on + strand, within Sama_2925 at 3480.744 kb on + strand, within Sama_2925 at 3480.744 kb on + strand, within Sama_2925 at 3480.745 kb on - strand, within Sama_2925 at 3480.745 kb on - strand, within Sama_2925 at 3480.745 kb on - strand, within Sama_2925 at 3480.745 kb on - strand, within Sama_2925 at 3480.846 kb on + strand at 3480.846 kb on + strand at 3480.848 kb on + strand at 3481.017 kb on - strand, within Sama_2926 at 3481.055 kb on - strand, within Sama_2926 at 3481.055 kb on - strand, within Sama_2926 at 3481.161 kb on - strand, within Sama_2926 at 3481.161 kb on - strand, within Sama_2926 at 3481.297 kb on - strand, within Sama_2926 at 3481.356 kb on + strand, within Sama_2926 at 3481.365 kb on + strand, within Sama_2926 at 3481.366 kb on - strand, within Sama_2926 at 3481.366 kb on - strand, within Sama_2926 at 3481.366 kb on - strand, within Sama_2926 at 3481.406 kb on - strand, within Sama_2926 at 3481.406 kb on - strand, within Sama_2926 at 3481.412 kb on + strand, within Sama_2926 at 3481.447 kb on - strand, within Sama_2926 at 3481.447 kb on - strand, within Sama_2926 at 3481.447 kb on - strand, within Sama_2926 at 3481.461 kb on + strand, within Sama_2926 at 3481.461 kb on + strand, within Sama_2926 at 3481.461 kb on + strand, within Sama_2926 at 3481.482 kb on + strand at 3481.502 kb on + strand at 3481.503 kb on - strand at 3481.503 kb on - strand at 3481.503 kb on - strand at 3481.526 kb on - strand at 3481.526 kb on - strand at 3481.535 kb on + strand at 3481.535 kb on + strand at 3481.536 kb on - strand at 3481.536 kb on - strand at 3481.536 kb on - strand at 3481.536 kb on - strand at 3481.581 kb on + strand, within Sama_2927 at 3481.581 kb on + strand, within Sama_2927 at 3481.581 kb on + strand, within Sama_2927 at 3481.582 kb on - strand, within Sama_2927 at 3481.582 kb on - strand, within Sama_2927 at 3481.665 kb on - strand, within Sama_2927 at 3481.665 kb on - strand, within Sama_2927 at 3481.685 kb on + strand, within Sama_2927 at 3481.685 kb on + strand, within Sama_2927 at 3481.699 kb on + strand, within Sama_2927 at 3481.699 kb on + strand, within Sama_2927 at 3481.699 kb on + strand, within Sama_2927 at 3481.699 kb on + strand, within Sama_2927 at 3481.700 kb on - strand, within Sama_2927 at 3481.700 kb on - strand, within Sama_2927 at 3481.700 kb on - strand, within Sama_2927 at 3481.700 kb on - strand, within Sama_2927 at 3481.782 kb on + strand, within Sama_2927 at 3481.782 kb on + strand, within Sama_2927 at 3481.782 kb on + strand, within Sama_2927 at 3481.783 kb on - strand, within Sama_2927 at 3481.783 kb on - strand, within Sama_2927 at 3481.783 kb on - strand, within Sama_2927 at 3481.805 kb on - strand, within Sama_2927 at 3481.848 kb on - strand, within Sama_2927 at 3481.972 kb on + strand at 3481.972 kb on + strand at 3481.982 kb on - strand at 3481.982 kb on - strand at 3481.998 kb on + strand at 3481.999 kb on - strand at 3481.999 kb on - strand at 3481.999 kb on - strand at 3481.999 kb on - strand at 3482.003 kb on + strand at 3482.003 kb on + strand at 3482.003 kb on + strand at 3482.004 kb on - strand at 3482.036 kb on + strand at 3482.046 kb on + strand at 3482.046 kb on + strand at 3482.047 kb on - strand at 3482.053 kb on - strand at 3482.090 kb on + strand at 3482.090 kb on + strand at 3482.090 kb on + strand at 3482.090 kb on + strand at 3482.090 kb on + strand at 3482.091 kb on - strand at 3482.091 kb on - strand at 3482.091 kb on - strand at 3482.096 kb on - strand at 3482.175 kb on + strand, within Sama_2928 at 3482.175 kb on + strand, within Sama_2928 at 3482.175 kb on + strand, within Sama_2928 at 3482.176 kb on - strand, within Sama_2928 at 3482.238 kb on + strand, within Sama_2928 at 3482.239 kb on - strand, within Sama_2928 at 3482.239 kb on - strand, within Sama_2928 at 3482.267 kb on + strand, within Sama_2928 at 3482.267 kb on + strand, within Sama_2928 at 3482.267 kb on + strand, within Sama_2928 at 3482.268 kb on - strand, within Sama_2928 at 3482.423 kb on + strand, within Sama_2928 at 3482.423 kb on + strand, within Sama_2928 at 3482.424 kb on - strand, within Sama_2928 at 3482.437 kb on + strand, within Sama_2928 at 3482.438 kb on - strand, within Sama_2928 at 3482.438 kb on - strand, within Sama_2928 at 3482.438 kb on - strand, within Sama_2928
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 3,479,876 + Sama_2924 0.83 +0.1 3,479,876 + Sama_2924 0.83 -1.0 3,479,877 - Sama_2924 0.83 -1.1 3,479,889 + Sama_2924 0.84 -0.6 3,479,889 + Sama_2924 0.84 +0.8 3,479,889 + Sama_2924 0.84 -0.3 3,479,889 + Sama_2924 0.84 +0.8 3,480,164 + -0.4 3,480,165 - +1.2 3,480,178 + -0.3 3,480,179 - -0.5 3,480,179 - -0.9 3,480,181 + +1.0 3,480,182 - -0.5 3,480,184 + +2.0 3,480,184 + +0.4 3,480,196 + +0.2 3,480,196 + -1.1 3,480,196 + +0.9 3,480,196 + +1.7 3,480,196 + -0.3 3,480,196 + +1.3 3,480,197 - -1.0 3,480,198 + +2.6 3,480,198 + -1.8 3,480,198 + -0.3 3,480,198 + -1.1 3,480,198 + +0.5 3,480,198 + +3.1 3,480,198 + -1.6 3,480,199 - +1.7 3,480,199 - +2.9 3,480,199 - -2.3 3,480,207 + +0.1 3,480,207 + -0.6 3,480,207 + +1.2 3,480,207 + +1.8 3,480,207 + -1.3 3,480,207 + +0.8 3,480,207 + -0.8 3,480,208 - +1.2 3,480,208 - -2.4 3,480,208 - +0.1 3,480,208 - +1.4 3,480,208 - -1.4 3,480,208 - -0.9 3,480,208 - -0.4 3,480,239 + -0.4 3,480,240 - +1.5 3,480,242 + -0.5 3,480,243 - -1.6 3,480,243 - -2.7 3,480,268 - -0.9 3,480,317 + +0.2 3,480,317 + -3.5 3,480,317 + +2.0 3,480,317 + -1.0 3,480,317 + -0.4 3,480,317 + +0.7 3,480,317 + +2.2 3,480,376 + -2.0 3,480,376 + +3.2 3,480,376 + -1.5 3,480,376 + +1.5 3,480,377 - -0.4 3,480,377 - +1.9 3,480,385 + -0.4 3,480,489 + Sama_2925 0.27 -1.0 3,480,490 - Sama_2925 0.27 -2.5 3,480,490 - Sama_2925 0.27 -3.0 3,480,509 + Sama_2925 0.31 -2.7 3,480,509 + Sama_2925 0.31 +1.6 3,480,510 - Sama_2925 0.32 -0.3 3,480,510 - Sama_2925 0.32 +0.6 3,480,510 - Sama_2925 0.32 +0.6 3,480,569 + Sama_2925 0.46 +0.2 3,480,569 + Sama_2925 0.46 -2.4 3,480,569 + Sama_2925 0.46 -1.1 3,480,569 + Sama_2925 0.46 +2.2 3,480,569 + Sama_2925 0.46 -0.5 3,480,569 + Sama_2925 0.46 -0.2 3,480,569 + Sama_2925 0.46 -0.5 3,480,569 + Sama_2925 0.46 -1.5 3,480,569 + Sama_2925 0.46 -1.3 3,480,570 - Sama_2925 0.46 -0.4 3,480,570 - Sama_2925 0.46 -1.1 3,480,605 + Sama_2925 0.54 -2.4 3,480,605 + Sama_2925 0.54 -0.1 3,480,605 + Sama_2925 0.54 -0.5 3,480,606 - Sama_2925 0.55 -0.5 3,480,628 + Sama_2925 0.60 -0.3 3,480,629 - Sama_2925 0.60 -1.3 3,480,629 - Sama_2925 0.60 -2.6 3,480,680 + Sama_2925 0.72 +0.1 3,480,681 - Sama_2925 0.72 -0.5 3,480,681 - Sama_2925 0.72 +1.2 3,480,685 + Sama_2925 0.73 +0.2 3,480,686 - Sama_2925 0.74 -0.3 3,480,686 - Sama_2925 0.74 -1.0 3,480,686 - Sama_2925 0.74 -0.1 3,480,686 - Sama_2925 0.74 +0.0 3,480,735 + Sama_2925 0.85 +1.0 3,480,735 + Sama_2925 0.85 +0.3 3,480,744 + Sama_2925 0.87 -0.5 3,480,744 + Sama_2925 0.87 -2.9 3,480,745 - Sama_2925 0.88 -1.0 3,480,745 - Sama_2925 0.88 -1.3 3,480,745 - Sama_2925 0.88 -0.4 3,480,745 - Sama_2925 0.88 +0.3 3,480,846 + +0.9 3,480,846 + -2.2 3,480,848 + -2.1 3,481,017 - Sama_2926 0.25 -1.2 3,481,055 - Sama_2926 0.30 -2.3 3,481,055 - Sama_2926 0.30 -2.4 3,481,161 - Sama_2926 0.46 -2.0 3,481,161 - Sama_2926 0.46 -2.2 3,481,297 - Sama_2926 0.66 -1.4 3,481,356 + Sama_2926 0.74 -2.3 3,481,365 + Sama_2926 0.75 -1.6 3,481,366 - Sama_2926 0.76 -0.8 3,481,366 - Sama_2926 0.76 -0.9 3,481,366 - Sama_2926 0.76 -2.0 3,481,406 - Sama_2926 0.81 -1.0 3,481,406 - Sama_2926 0.81 -2.4 3,481,412 + Sama_2926 0.82 -0.8 3,481,447 - Sama_2926 0.87 -2.1 3,481,447 - Sama_2926 0.87 -1.3 3,481,447 - Sama_2926 0.87 -1.8 3,481,461 + Sama_2926 0.89 -1.0 3,481,461 + Sama_2926 0.89 -1.3 3,481,461 + Sama_2926 0.89 -2.8 3,481,482 + +0.7 3,481,502 + -0.9 3,481,503 - -2.7 3,481,503 - -1.5 3,481,503 - -2.9 3,481,526 - -3.7 3,481,526 - +1.4 3,481,535 + -4.5 3,481,535 + -2.0 3,481,536 - -3.3 3,481,536 - -2.9 3,481,536 - -3.3 3,481,536 - -1.1 3,481,581 + Sama_2927 0.11 -1.6 3,481,581 + Sama_2927 0.11 +1.5 3,481,581 + Sama_2927 0.11 -3.5 3,481,582 - Sama_2927 0.11 -3.9 3,481,582 - Sama_2927 0.11 -1.4 3,481,665 - Sama_2927 0.30 -1.9 3,481,665 - Sama_2927 0.30 -2.7 3,481,685 + Sama_2927 0.35 -2.0 3,481,685 + Sama_2927 0.35 -0.6 3,481,699 + Sama_2927 0.38 -1.6 3,481,699 + Sama_2927 0.38 -2.5 3,481,699 + Sama_2927 0.38 -1.9 3,481,699 + Sama_2927 0.38 -2.0 3,481,700 - Sama_2927 0.38 -1.0 3,481,700 - Sama_2927 0.38 -1.6 3,481,700 - Sama_2927 0.38 -2.5 3,481,700 - Sama_2927 0.38 -2.5 3,481,782 + Sama_2927 0.57 -1.2 3,481,782 + Sama_2927 0.57 -1.2 3,481,782 + Sama_2927 0.57 -2.4 3,481,783 - Sama_2927 0.58 -2.9 3,481,783 - Sama_2927 0.58 -0.9 3,481,783 - Sama_2927 0.58 -1.0 3,481,805 - Sama_2927 0.63 -0.5 3,481,848 - Sama_2927 0.73 -0.5 3,481,972 + -2.3 3,481,972 + +0.5 3,481,982 - -2.9 3,481,982 - -2.1 3,481,998 + -2.4 3,481,999 - -3.6 3,481,999 - -1.8 3,481,999 - -1.3 3,481,999 - -2.2 3,482,003 + -1.6 3,482,003 + -1.7 3,482,003 + -1.6 3,482,004 - +0.5 3,482,036 + -2.9 3,482,046 + -1.9 3,482,046 + -0.6 3,482,047 - +0.8 3,482,053 - -2.7 3,482,090 + -0.6 3,482,090 + -3.7 3,482,090 + -1.1 3,482,090 + -0.7 3,482,090 + -3.7 3,482,091 - -0.8 3,482,091 - -1.7 3,482,091 - -2.2 3,482,096 - -0.4 3,482,175 + Sama_2928 0.12 -2.5 3,482,175 + Sama_2928 0.12 -2.7 3,482,175 + Sama_2928 0.12 -2.7 3,482,176 - Sama_2928 0.12 -3.5 3,482,238 + Sama_2928 0.19 -1.3 3,482,239 - Sama_2928 0.19 -1.6 3,482,239 - Sama_2928 0.19 -0.2 3,482,267 + Sama_2928 0.22 -0.2 3,482,267 + Sama_2928 0.22 -0.6 3,482,267 + Sama_2928 0.22 -1.3 3,482,268 - Sama_2928 0.22 -2.4 3,482,423 + Sama_2928 0.40 -1.9 3,482,423 + Sama_2928 0.40 -2.8 3,482,424 - Sama_2928 0.40 -1.2 3,482,437 + Sama_2928 0.41 -2.7 3,482,438 - Sama_2928 0.41 -1.0 3,482,438 - Sama_2928 0.41 -1.6 3,482,438 - Sama_2928 0.41 -2.9
Or see this region's nucleotide sequence