Strain Fitness in Shewanella amazonensis SB2B around Sama_2847

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
3,385,130	+				-1.3
3,385,131	-				+0.6
3,385,193	-		Sama_2846	0.13	-1.1
3,385,195	+		Sama_2846	0.13	-2.3
3,385,237	+		Sama_2846	0.17	-1.4
3,385,238	-		Sama_2846	0.17	-0.2
3,385,238	-		Sama_2846	0.17	+0.3
3,385,325	+		Sama_2846	0.26	-0.5
3,385,325	+		Sama_2846	0.26	+1.2
3,385,363	+		Sama_2846	0.30	-0.9
3,385,437	-		Sama_2846	0.38	+0.9
3,385,438	+		Sama_2846	0.38	-0.1
3,385,438	+		Sama_2846	0.38	+0.7
3,385,438	+		Sama_2846	0.38	-0.5
3,385,438	+		Sama_2846	0.38	+1.4
3,385,438	+		Sama_2846	0.38	+3.2
3,385,438	+		Sama_2846	0.38	-2.0
3,385,439	-		Sama_2846	0.39	+0.5
3,385,599	+		Sama_2846	0.55	-1.1
3,385,718	-		Sama_2846	0.68	-2.1
3,385,755	-		Sama_2846	0.72	-0.6
3,385,838	+		Sama_2846	0.81	+0.6
3,385,859	-		Sama_2846	0.83	-1.7
3,385,864	+		Sama_2846	0.83	-1.4
3,385,937	+				-2.6
3,385,973	-				-2.1
3,385,979	-				-0.8
3,385,998	+				-0.9
3,386,000	+				+1.5
3,386,000	+				+0.9
3,386,050	+				+0.3
3,386,086	+				-0.2
3,386,087	-				-0.5
3,386,088	+				-1.6
3,386,089	-				+0.2
3,386,102	-				-0.2
3,386,178	+				+1.2
3,386,184	+				+1.6
3,386,184	+				-0.7
3,386,184	+				-2.0
3,386,184	+				-0.1
3,386,184	+				-0.0
3,386,184	+				+1.3
3,386,184	+				-1.3
3,386,184	+				+0.5
3,386,185	-				-0.7
3,386,185	-				-0.1
3,386,252	+		Sama_2847	0.10	+1.5
3,386,252	+		Sama_2847	0.10	-0.5
3,386,253	-		Sama_2847	0.10	+0.6
3,386,253	-		Sama_2847	0.10	-1.2
3,386,293	-		Sama_2847	0.13	-1.4
3,386,350	+		Sama_2847	0.18	-1.0
3,386,350	+		Sama_2847	0.18	+1.0
3,386,351	-		Sama_2847	0.18	-2.4
3,386,354	+		Sama_2847	0.18	-2.0
3,386,354	+		Sama_2847	0.18	-2.4
3,386,354	+		Sama_2847	0.18	-1.2
3,386,354	+		Sama_2847	0.18	-0.8
3,386,354	+		Sama_2847	0.18	-1.2
3,386,354	+		Sama_2847	0.18	-2.2
3,386,354	+		Sama_2847	0.18	-2.6
3,386,354	+		Sama_2847	0.18	-2.4
3,386,354	+		Sama_2847	0.18	-1.0
3,386,355	-		Sama_2847	0.18	-2.9
3,386,355	-		Sama_2847	0.18	-1.9
3,386,355	-		Sama_2847	0.18	-1.8
3,386,355	-		Sama_2847	0.18	-0.5
3,386,355	-		Sama_2847	0.18	+2.1
3,386,355	-		Sama_2847	0.18	+0.8
3,386,355	-		Sama_2847	0.18	-0.4
3,386,355	-		Sama_2847	0.18	-1.1
3,386,355	-		Sama_2847	0.18	-0.7
3,386,355	-		Sama_2847	0.18	-2.3
3,386,426	+		Sama_2847	0.24	-2.2
3,386,427	-		Sama_2847	0.24	-2.0
3,386,442	-		Sama_2847	0.25	-0.4
3,386,468	+		Sama_2847	0.27	-0.4
3,386,492	-		Sama_2847	0.29	-2.2
3,386,492	-		Sama_2847	0.29	-2.2
3,386,492	-		Sama_2847	0.29	+2.8
3,386,492	-		Sama_2847	0.29	-1.3
3,386,492	-		Sama_2847	0.29	-1.2
3,386,524	+		Sama_2847	0.31	+0.2
3,386,525	-		Sama_2847	0.32	-0.3
3,386,525	-		Sama_2847	0.32	+0.0
3,386,525	-		Sama_2847	0.32	-1.5
3,386,525	-		Sama_2847	0.32	-0.8
3,386,584	+		Sama_2847	0.36	-2.8
3,386,584	+		Sama_2847	0.36	+2.8
3,386,585	-		Sama_2847	0.36	-1.6
3,386,618	+		Sama_2847	0.39	+2.4
3,386,618	+		Sama_2847	0.39	+2.0
3,386,618	+		Sama_2847	0.39	+0.2
3,386,618	+		Sama_2847	0.39	-3.5
3,386,618	+		Sama_2847	0.39	-0.7
3,386,619	-		Sama_2847	0.39	-1.7
3,386,619	-		Sama_2847	0.39	+0.1
3,386,623	-		Sama_2847	0.39	-0.0
3,386,656	+		Sama_2847	0.42	+2.3
3,386,656	+		Sama_2847	0.42	-1.8
3,386,668	+		Sama_2847	0.43	+0.1
3,386,669	-		Sama_2847	0.43	-2.7
3,386,669	-		Sama_2847	0.43	-0.4
3,386,669	-		Sama_2847	0.43	-0.5
3,386,683	+		Sama_2847	0.44	-1.0
3,386,683	+		Sama_2847	0.44	-0.5
3,386,725	+		Sama_2847	0.47	-1.4
3,386,860	+		Sama_2847	0.58	-1.5
3,386,883	+		Sama_2847	0.59	+0.5
3,386,884	-		Sama_2847	0.60	+1.0
3,386,960	-		Sama_2847	0.65	-0.7
3,386,964	+		Sama_2847	0.66	-1.7
3,386,964	+		Sama_2847	0.66	-2.1
3,387,127	+		Sama_2847	0.78	-1.0
3,387,127	+		Sama_2847	0.78	+0.8
3,387,127	+		Sama_2847	0.78	-1.4
3,387,127	+		Sama_2847	0.78	+2.9
3,387,127	+		Sama_2847	0.78	-3.0
3,387,130	+		Sama_2847	0.79	+0.8
3,387,131	-		Sama_2847	0.79	+4.4
3,387,131	-		Sama_2847	0.79	+0.6
3,387,131	-		Sama_2847	0.79	+1.5
3,387,132	+		Sama_2847	0.79	-1.6
3,387,132	+		Sama_2847	0.79	+0.8
3,387,133	-		Sama_2847	0.79	-1.2
3,387,133	-		Sama_2847	0.79	+0.2
3,387,150	+		Sama_2847	0.80	+3.9
3,387,150	+		Sama_2847	0.80	-3.3
3,387,150	+		Sama_2847	0.80	-0.5
3,387,150	+		Sama_2847	0.80	-1.4
3,387,150	+		Sama_2847	0.80	-0.8
3,387,150	+		Sama_2847	0.80	+1.5
3,387,150	+		Sama_2847	0.80	+0.3
3,387,151	-		Sama_2847	0.80	+0.6
3,387,151	-		Sama_2847	0.80	+0.6
3,387,151	-		Sama_2847	0.80	+1.0
3,387,151	-		Sama_2847	0.80	+0.2
3,387,151	-		Sama_2847	0.80	+1.6
3,387,151	-		Sama_2847	0.80	+2.8
3,387,151	-		Sama_2847	0.80	-1.6
3,387,151	-		Sama_2847	0.80	-2.3
3,387,151	-		Sama_2847	0.80	+3.4
3,387,196	+		Sama_2847	0.84	+0.6
3,387,196	+		Sama_2847	0.84	-0.4
3,387,234	-		Sama_2847	0.87	-1.6
3,387,276	+				+1.5
3,387,309	+				-1.8
3,387,309	+				+0.8
3,387,309	+				-3.4
3,387,309	+				-1.2
3,387,310	-				+0.3
3,387,310	-				-2.9
3,387,310	-				-0.7
3,387,310	-				+0.3
3,387,310	-				-0.5
3,387,310	-				-0.8
3,387,312	+				+1.4
3,387,312	+				+4.3
3,387,312	+				-0.4
3,387,312	+				+0.6
3,387,313	-				-1.7
3,387,313	-				-2.0
3,387,313	-				-2.8
3,387,313	-				+3.0
3,387,325	+				-1.4
3,387,328	+				-0.5
3,387,328	+				-0.5
3,387,329	-				-1.6
3,387,344	+				+1.1
3,387,345	-				+2.4
3,387,345	-				-0.1
3,387,391	+				-1.0
3,387,391	+				-1.0
3,387,427	+				-3.3
3,387,427	+				-0.2
3,387,428	-				-0.4
3,387,445	+				+0.6
3,387,446	-				+1.2
3,387,458	+				-0.7
3,387,458	+				+0.5
3,387,458	+				-0.5
3,387,459	-				-1.0
3,387,459	-				-1.0
3,387,459	-				-0.5
3,387,459	-				-0.8
3,387,459	-				-1.1
3,387,459	-				+0.2
3,387,478	-				-2.0
3,387,486	+				-0.9
3,387,487	-				-0.1
3,387,500	+				-0.8
3,387,500	+				-1.9
3,387,501	-				-0.7
3,387,505	+				+0.6
3,387,505	+				+1.6
3,387,505	+				-0.7
3,387,506	-				+2.5
3,387,506	-				-0.8
3,387,506	-				-3.3
3,387,525	+				-1.9
3,387,526	-				-2.5
3,387,580	-				+1.2
3,387,601	+				+0.2
3,387,601	+				-0.2
3,387,601	+				-1.2
3,387,601	+				-2.4
3,387,601	+				-0.9
3,387,601	+				+2.1
3,387,601	+				+1.1
3,387,601	+				+0.7
3,387,601	+				+1.5
3,387,602	-				-1.0
3,387,602	-				-2.5
3,387,602	-				-0.2
3,387,602	-				+1.0
3,387,602	-				+3.7
3,387,602	-				-2.5
3,387,602	-				-2.2
3,387,602	-				-1.6
3,387,602	-				+1.3
3,387,602	-				-0.7
3,387,602	-				-2.7
3,387,602	-				-1.6
3,387,636	+				-0.9
3,387,637	-				-0.0
3,387,652	+				+2.2
3,387,652	+				-0.7
3,387,652	+				+2.9
3,387,653	-				-1.6
3,387,653	-				-0.7
3,387,678	+				-1.6
3,387,678	+				-1.4
3,387,678	+				-0.8
3,387,679	-				-1.2
3,387,679	-				+1.0
3,387,699	+				-0.8
3,387,699	+				+1.4
3,387,699	+				+0.8
3,387,699	+				+0.8
3,387,699	+				-1.7
3,387,699	+				+0.5
3,387,699	+				-0.4
3,387,699	+				+0.5
3,387,699	+				-1.8
3,387,700	-				-0.2
3,387,700	-				+1.3
3,387,700	-				-0.9
3,387,700	-				+3.2
3,387,700	-				+0.9
3,387,700	-				-1.3
3,387,700	-				-1.5
3,387,706	+				-0.5
3,387,706	+				-0.7
3,387,706	+				+2.9
3,387,933	+		Sama_2848	0.33	-1.3
3,387,934	-		Sama_2848	0.33	-0.7
3,388,019	+		Sama_2848	0.45	-0.3
3,388,019	+		Sama_2848	0.45	+0.5
3,388,019	+		Sama_2848	0.45	+3.1
3,388,019	+		Sama_2848	0.45	-1.7
3,388,019	+		Sama_2848	0.45	+1.9
3,388,019	+		Sama_2848	0.45	-0.3
3,388,020	-		Sama_2848	0.45	+1.1
3,388,020	-		Sama_2848	0.45	-1.0
3,388,229	-		Sama_2848	0.73	-1.9
3,388,233	+		Sama_2848	0.73	+0.4
3,388,325	+		Sama_2848	0.86	+0.2
3,388,325	+		Sama_2848	0.86	-1.6
3,388,325	+		Sama_2848	0.86	-0.8
3,388,326	-		Sama_2848	0.86	+0.5
3,388,326	-		Sama_2848	0.86	-0.2
3,388,326	-		Sama_2848	0.86	-0.1
3,388,326	-		Sama_2848	0.86	+0.3
3,388,371	-				-2.3