Strain Fitness in Shewanella amazonensis SB2B around Sama_2380

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
2,857,546	-		Sama_2379	0.58	+2.5
2,857,609	+		Sama_2379	0.62	-1.3
2,857,703	+		Sama_2379	0.68	+0.3
2,857,704	-		Sama_2379	0.68	-1.7
2,857,704	-		Sama_2379	0.68	-1.4
2,857,704	-		Sama_2379	0.68	+0.9
2,857,706	-		Sama_2379	0.69	+2.1
2,857,706	-		Sama_2379	0.69	-2.1
2,857,719	+		Sama_2379	0.69	+0.1
2,857,719	+		Sama_2379	0.69	-2.6
2,857,720	-		Sama_2379	0.70	-0.5
2,857,820	+		Sama_2379	0.76	-0.9
2,857,821	-		Sama_2379	0.76	+0.1
2,857,875	+		Sama_2379	0.80	-1.7
2,857,876	-		Sama_2379	0.80	-2.4
2,857,878	+		Sama_2379	0.80	+2.3
2,857,878	+		Sama_2379	0.80	+1.5
2,857,878	+		Sama_2379	0.80	-1.4
2,857,879	-		Sama_2379	0.80	-1.5
2,857,879	-		Sama_2379	0.80	-1.6
2,857,879	-		Sama_2379	0.80	-0.7
2,857,879	-		Sama_2379	0.80	+0.4
2,857,884	+		Sama_2379	0.81	+0.4
2,857,885	-		Sama_2379	0.81	-1.3
2,857,897	-		Sama_2379	0.82	-0.6
2,857,897	-		Sama_2379	0.82	+0.3
2,857,956	+		Sama_2379	0.86	-1.9
2,857,957	-		Sama_2379	0.86	+1.8
2,857,958	+		Sama_2379	0.86	-1.7
2,857,959	-		Sama_2379	0.86	+1.5
2,857,959	-		Sama_2379	0.86	-2.2
2,857,959	-		Sama_2379	0.86	+1.2
2,858,037	+				-2.1
2,858,078	-				+0.3
2,858,130	-				+0.2
2,858,181	+				+0.5
2,858,182	-				-3.0
2,858,204	-				-1.7
2,858,204	-				-0.7
2,858,204	-				-1.7
2,858,247	+				+1.4
2,858,410	-				-2.6
2,858,410	-				-1.5
2,858,427	-				-2.0
2,858,496	+				+2.5
2,858,497	-				-0.6
2,858,497	-				-0.1
2,858,497	-				+0.7
2,858,553	+				-0.7
2,858,553	+				-1.8
2,858,553	+				-0.8
2,858,553	+				+2.9
2,858,553	+				-0.8
2,858,553	+				-0.6
2,858,554	-				-2.2
2,858,554	-				+0.7
2,858,554	-				-1.7
2,858,554	-				+0.2
2,858,554	-				-1.2
2,858,554	-				-0.1
2,858,554	-				-0.9
2,858,554	-				+0.2
2,858,556	-				+1.9
2,858,563	-		Sama_2380	0.10	-0.2
2,858,599	+		Sama_2380	0.13	+1.1
2,858,599	+		Sama_2380	0.13	+1.2
2,858,600	-		Sama_2380	0.13	-1.1
2,858,600	-		Sama_2380	0.13	+0.3
2,858,600	-		Sama_2380	0.13	-2.1
2,858,600	-		Sama_2380	0.13	-1.7
2,858,600	-		Sama_2380	0.13	-2.3
2,858,600	-		Sama_2380	0.13	-1.0
2,858,600	-		Sama_2380	0.13	+1.0
2,858,600	-		Sama_2380	0.13	+1.2
2,858,603	+		Sama_2380	0.13	+1.9
2,858,603	+		Sama_2380	0.13	+0.4
2,858,603	+		Sama_2380	0.13	-0.3
2,858,603	+		Sama_2380	0.13	-1.6
2,858,603	+		Sama_2380	0.13	-0.9
2,858,603	+		Sama_2380	0.13	-0.6
2,858,604	-		Sama_2380	0.13	+1.2
2,858,604	-		Sama_2380	0.13	-2.1
2,858,604	-		Sama_2380	0.13	-1.5
2,858,604	-		Sama_2380	0.13	-0.8
2,858,636	+		Sama_2380	0.16	-2.6
2,858,664	+		Sama_2380	0.18	-1.7
2,858,664	+		Sama_2380	0.18	-1.3
2,858,664	+		Sama_2380	0.18	+3.1
2,858,664	+		Sama_2380	0.18	-0.5
2,858,665	-		Sama_2380	0.18	-0.9
2,858,665	-		Sama_2380	0.18	-1.0
2,858,665	-		Sama_2380	0.18	-0.8
2,858,665	-		Sama_2380	0.18	+0.6
2,858,665	-		Sama_2380	0.18	+2.4
2,858,665	-		Sama_2380	0.18	+0.5
2,858,697	-		Sama_2380	0.20	-1.1
2,858,697	-		Sama_2380	0.20	-2.3
2,858,702	+		Sama_2380	0.21	+0.1
2,858,703	-		Sama_2380	0.21	-0.0
2,858,703	-		Sama_2380	0.21	+1.9
2,858,787	+		Sama_2380	0.27	-1.2
2,858,787	+		Sama_2380	0.27	-1.2
2,858,787	+		Sama_2380	0.27	-1.0
2,858,787	+		Sama_2380	0.27	-1.9
2,858,787	+		Sama_2380	0.27	-2.5
2,858,788	-		Sama_2380	0.27	+1.7
2,858,790	-		Sama_2380	0.27	+0.4
2,858,790	-		Sama_2380	0.27	+0.7
2,858,790	-		Sama_2380	0.27	-1.0
2,858,790	-		Sama_2380	0.27	+0.3
2,858,790	-		Sama_2380	0.27	-0.5
2,858,811	-		Sama_2380	0.29	-2.5
2,858,811	-		Sama_2380	0.29	+0.5
2,858,811	-		Sama_2380	0.29	-0.2
2,858,811	-		Sama_2380	0.29	-0.3
2,858,891	+		Sama_2380	0.35	-2.7
2,858,892	-		Sama_2380	0.35	+1.5
2,858,901	-		Sama_2380	0.36	-0.7
2,858,948	+		Sama_2380	0.39	-2.0
2,858,949	-		Sama_2380	0.39	+1.9
2,858,993	+		Sama_2380	0.43	-1.4
2,858,994	-		Sama_2380	0.43	-0.5
2,859,062	-		Sama_2380	0.48	+1.5
2,859,070	+		Sama_2380	0.49	-1.4
2,859,070	+		Sama_2380	0.49	+0.2
2,859,070	+		Sama_2380	0.49	-0.5
2,859,070	+		Sama_2380	0.49	-1.3
2,859,071	-		Sama_2380	0.49	+0.1
2,859,071	-		Sama_2380	0.49	-0.3
2,859,213	+		Sama_2380	0.59	-2.7
2,859,213	+		Sama_2380	0.59	+0.1
2,859,213	+		Sama_2380	0.59	-1.6
2,859,214	-		Sama_2380	0.60	-3.4
2,859,214	-		Sama_2380	0.60	-3.2
2,859,230	+		Sama_2380	0.61	-0.3
2,859,230	+		Sama_2380	0.61	-0.3
2,859,231	-		Sama_2380	0.61	+0.0
2,859,231	-		Sama_2380	0.61	+1.5
2,859,231	-		Sama_2380	0.61	-0.1
2,859,241	+		Sama_2380	0.62	-2.1
2,859,242	-		Sama_2380	0.62	-1.5
2,859,242	-		Sama_2380	0.62	-1.9
2,859,316	+		Sama_2380	0.67	-2.0
2,859,316	+		Sama_2380	0.67	-2.0
2,859,316	+		Sama_2380	0.67	-2.8
2,859,316	+		Sama_2380	0.67	+2.6
2,859,316	+		Sama_2380	0.67	+0.1
2,859,316	+		Sama_2380	0.67	-0.3
2,859,317	-		Sama_2380	0.67	-0.1
2,859,317	-		Sama_2380	0.67	-1.2
2,859,360	+		Sama_2380	0.71	+0.1
2,859,360	+		Sama_2380	0.71	-0.8
2,859,361	-		Sama_2380	0.71	+0.1
2,859,361	-		Sama_2380	0.71	-0.9
2,859,366	+		Sama_2380	0.71	-1.0
2,859,419	+		Sama_2380	0.75	+0.7
2,859,419	+		Sama_2380	0.75	+0.8
2,859,420	-		Sama_2380	0.75	+1.5
2,859,420	-		Sama_2380	0.75	-2.9
2,859,452	-		Sama_2380	0.78	-0.6
2,859,470	+		Sama_2380	0.79	+0.9
2,859,470	+		Sama_2380	0.79	+0.1
2,859,470	+		Sama_2380	0.79	-0.6
2,859,470	+		Sama_2380	0.79	-2.1
2,859,470	+		Sama_2380	0.79	-1.5
2,859,470	+		Sama_2380	0.79	+1.0
2,859,471	-		Sama_2380	0.79	-0.5
2,859,471	-		Sama_2380	0.79	-2.9
2,859,471	-		Sama_2380	0.79	+3.4
2,859,474	+		Sama_2380	0.79	-1.7
2,859,475	-		Sama_2380	0.79	+1.9
2,859,502	+		Sama_2380	0.81	+0.7
2,859,502	+		Sama_2380	0.81	+0.1
2,859,538	+		Sama_2380	0.84	-1.8
2,859,538	+		Sama_2380	0.84	+1.0
2,859,538	+		Sama_2380	0.84	-0.3
2,859,539	-		Sama_2380	0.84	-0.7
2,859,539	-		Sama_2380	0.84	+0.8
2,859,539	-		Sama_2380	0.84	-0.8
2,859,539	-		Sama_2380	0.84	+0.6
2,859,542	+		Sama_2380	0.84	-1.2
2,859,607	-		Sama_2380	0.89	-2.0
2,859,607	-		Sama_2380	0.89	+0.2
2,859,607	-		Sama_2380	0.89	+0.4
2,859,654	+				-1.1
2,859,654	+				+0.4
2,859,654	+				+1.7
2,859,655	-				-1.0
2,859,656	+				-1.0
2,859,656	+				+0.0
2,859,656	+				+0.6
2,859,656	+				-1.9
2,859,657	-				-0.9
2,859,657	-				-2.9
2,859,657	-				-0.2
2,859,737	+				-0.8
2,859,737	+				-1.6
2,859,738	-				-0.7
2,859,738	-				+1.3
2,859,738	-				-0.1
2,859,799	-				+0.1
2,859,808	+				-0.8
2,859,809	-				+1.7
2,859,809	-				-1.1
2,860,036	+		Sama_2381	0.13	-1.1
2,860,036	+		Sama_2381	0.13	-3.0
2,860,036	+		Sama_2381	0.13	+1.7
2,860,037	-		Sama_2381	0.13	+1.3
2,860,115	+		Sama_2381	0.18	-0.7
2,860,115	+		Sama_2381	0.18	-0.1
2,860,115	+		Sama_2381	0.18	-1.7
2,860,115	+		Sama_2381	0.18	+2.6
2,860,116	-		Sama_2381	0.18	-1.2
2,860,116	-		Sama_2381	0.18	-0.0
2,860,116	-		Sama_2381	0.18	-0.0
2,860,116	-		Sama_2381	0.18	-1.4
2,860,158	-		Sama_2381	0.20	-1.7
2,860,158	-		Sama_2381	0.20	-2.9
2,860,188	+		Sama_2381	0.22	+0.1
2,860,189	-		Sama_2381	0.22	-0.7
2,860,296	+		Sama_2381	0.29	+2.4
2,860,296	+		Sama_2381	0.29	-1.4
2,860,305	+		Sama_2381	0.29	-1.0
2,860,562	-		Sama_2381	0.45	+2.3
2,860,595	+		Sama_2381	0.47	-1.6
2,860,607	+		Sama_2381	0.48	-2.3
2,860,607	+		Sama_2381	0.48	+1.1
2,860,608	-		Sama_2381	0.48	-1.8
2,860,608	-		Sama_2381	0.48	-1.7
2,860,638	+		Sama_2381	0.50	+0.0
2,860,639	-		Sama_2381	0.50	-3.1
2,860,639	-		Sama_2381	0.50	-0.1
2,860,656	-		Sama_2381	0.51	-1.1
2,860,697	-		Sama_2381	0.53	+1.0
2,860,707	+		Sama_2381	0.54	-1.0
2,860,708	-		Sama_2381	0.54	+1.0
2,860,708	-		Sama_2381	0.54	+2.0