Strain Fitness in Shewanella amazonensis SB2B around Sama_2214

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
2,675,562	-		Sama_2213	0.34	+1.0
2,675,586	+		Sama_2213	0.36	-0.0
2,675,586	+		Sama_2213	0.36	+1.4
2,675,586	+		Sama_2213	0.36	-1.6
2,675,586	+		Sama_2213	0.36	-1.6
2,675,587	-		Sama_2213	0.36	-1.5
2,675,587	-		Sama_2213	0.36	-0.2
2,675,641	-		Sama_2213	0.40	+4.0
2,675,928	+		Sama_2213	0.60	+0.1
2,675,928	+		Sama_2213	0.60	+5.1
2,675,928	+		Sama_2213	0.60	-0.5
2,675,928	+		Sama_2213	0.60	+0.4
2,675,929	-		Sama_2213	0.60	-0.6
2,675,929	-		Sama_2213	0.60	-0.2
2,675,929	-		Sama_2213	0.60	+2.4
2,676,011	+		Sama_2213	0.66	-0.6
2,676,011	+		Sama_2213	0.66	+0.7
2,676,012	-		Sama_2213	0.66	-0.1
2,676,017	-		Sama_2213	0.67	+0.2
2,676,042	+		Sama_2213	0.69	-1.2
2,676,042	+		Sama_2213	0.69	+0.4
2,676,072	+		Sama_2213	0.71	-0.5
2,676,132	+		Sama_2213	0.75	-1.1
2,676,133	-		Sama_2213	0.75	-1.3
2,676,133	-		Sama_2213	0.75	-2.2
2,676,133	-		Sama_2213	0.75	-1.0
2,676,133	-		Sama_2213	0.75	-1.9
2,676,220	+		Sama_2213	0.81	+0.3
2,676,221	-		Sama_2213	0.81	-1.3
2,676,221	-		Sama_2213	0.81	-1.0
2,676,221	-		Sama_2213	0.81	+0.3
2,676,221	-		Sama_2213	0.81	-0.3
2,676,221	-		Sama_2213	0.81	-1.0
2,676,363	+				-0.4
2,676,410	-				+0.3
2,676,449	-				-2.4
2,676,460	-				-1.8
2,676,475	+				-2.2
2,676,475	+				-0.2
2,676,475	+				-2.0
2,676,475	+				-1.1
2,676,476	-				-1.2
2,676,476	-				-0.2
2,676,521	-				-1.6
2,676,521	-				-0.9
2,676,533	+				-0.4
2,676,534	-				-2.9
2,676,534	-				-3.4
2,676,546	+				-3.3
2,676,618	+		Sama_2214	0.13	-3.9
2,676,619	-		Sama_2214	0.14	-0.7
2,676,621	+		Sama_2214	0.14	-2.0
2,676,622	-		Sama_2214	0.14	-3.8
2,676,622	-		Sama_2214	0.14	-2.4
2,676,622	-		Sama_2214	0.14	-3.0
2,676,622	-		Sama_2214	0.14	-1.6
2,676,622	-		Sama_2214	0.14	-3.3
2,676,633	+		Sama_2214	0.15	-3.8
2,676,633	+		Sama_2214	0.15	-2.0
2,676,634	-		Sama_2214	0.15	-2.9
2,676,688	+		Sama_2214	0.19	-1.9
2,676,688	+		Sama_2214	0.19	-2.4
2,676,689	-		Sama_2214	0.19	-2.0
2,676,758	-		Sama_2214	0.25	-2.7
2,676,760	+		Sama_2214	0.25	-0.4
2,676,773	+		Sama_2214	0.26	-1.5
2,676,773	+		Sama_2214	0.26	+1.4
2,676,773	+		Sama_2214	0.26	-1.2
2,676,773	+		Sama_2214	0.26	-2.7
2,676,827	+		Sama_2214	0.30	-2.6
2,676,864	-		Sama_2214	0.33	-3.1
2,676,864	-		Sama_2214	0.33	-0.7
2,676,864	-		Sama_2214	0.33	-1.6
2,676,880	-		Sama_2214	0.35	-2.9
2,676,949	+		Sama_2214	0.40	-1.3
2,676,999	+		Sama_2214	0.44	-2.1
2,677,022	-		Sama_2214	0.46	-2.0
2,677,025	+		Sama_2214	0.47	-2.5
2,677,025	+		Sama_2214	0.47	-1.0
2,677,026	-		Sama_2214	0.47	-2.5
2,677,026	-		Sama_2214	0.47	-3.3
2,677,026	-		Sama_2214	0.47	-3.2
2,677,026	-		Sama_2214	0.47	+4.3
2,677,136	+		Sama_2214	0.56	-1.9
2,677,136	+		Sama_2214	0.56	-1.7
2,677,136	+		Sama_2214	0.56	-1.1
2,677,136	+		Sama_2214	0.56	-1.8
2,677,137	-		Sama_2214	0.56	-2.0
2,677,137	-		Sama_2214	0.56	-1.5
2,677,247	-		Sama_2214	0.65	-2.5
2,677,260	+		Sama_2214	0.66	-1.7
2,677,277	+		Sama_2214	0.67	-2.7
2,677,277	+		Sama_2214	0.67	-1.7
2,677,343	+		Sama_2214	0.72	-2.1
2,677,343	+		Sama_2214	0.72	-1.6
2,677,344	-		Sama_2214	0.73	-0.2
2,677,344	-		Sama_2214	0.73	-1.0
2,677,344	-		Sama_2214	0.73	-0.1
2,677,344	-		Sama_2214	0.73	-2.5
2,677,344	-		Sama_2214	0.73	-2.8
2,677,344	-		Sama_2214	0.73	-1.7
2,677,346	+		Sama_2214	0.73	-2.0
2,677,365	-		Sama_2214	0.74	-1.9
2,677,365	-		Sama_2214	0.74	+3.5
2,677,438	+		Sama_2214	0.80	-1.7
2,677,529	-		Sama_2214	0.88	-2.8
2,677,596	+				-1.1
2,677,596	+				-2.3
2,677,597	-				-1.2
2,677,597	-				-0.7
2,677,597	-				-2.5
2,677,607	-				-2.1
2,677,607	-				-2.8
2,677,608	+				-1.6
2,677,608	+				-2.5
2,677,632	-				-3.6
2,677,632	-				-0.7
2,677,668	-				-2.3
2,677,695	-				-0.6
2,677,695	-				+0.7
2,677,731	+				-3.0
2,677,743	-				-1.7
2,677,750	-				-2.0
2,677,788	+				-2.1
2,677,788	+				-0.7
2,677,788	+				+0.0
2,677,788	+				-0.6
2,677,792	+				-2.1
2,677,792	+				-0.2
2,677,810	-				-2.1
2,677,810	-				-1.1
2,677,812	+				-3.3
2,677,812	+				-1.9
2,677,812	+				-2.1
2,677,812	+				-0.6
2,677,812	+				-2.6
2,677,812	+				-1.0
2,677,812	+				-1.3
2,677,813	-				-0.4
2,677,813	-				-1.1
2,677,813	-				-2.0
2,677,838	+				-1.6
2,677,857	+				-3.2
2,678,003	+		Sama_2215	0.23	-0.9
2,678,003	+		Sama_2215	0.23	-3.8
2,678,003	+		Sama_2215	0.23	-3.1
2,678,004	-		Sama_2215	0.23	-2.3
2,678,027	+		Sama_2215	0.25	-2.0
2,678,028	-		Sama_2215	0.25	-3.1
2,678,128	+		Sama_2215	0.37	-3.8
2,678,129	-		Sama_2215	0.37	-2.7
2,678,129	-		Sama_2215	0.37	-1.4
2,678,241	+		Sama_2215	0.50	-1.6
2,678,346	+		Sama_2215	0.61	-1.7
2,678,393	+		Sama_2215	0.67	+4.0
2,678,393	+		Sama_2215	0.67	-2.0
2,678,393	+		Sama_2215	0.67	+1.3
2,678,464	-		Sama_2215	0.75	-3.3
2,678,487	+		Sama_2215	0.77	-2.6
2,678,493	+		Sama_2215	0.78	-2.7
2,678,494	-		Sama_2215	0.78	-1.6
2,678,549	+		Sama_2215	0.84	-3.7
2,678,568	-		Sama_2215	0.87	-1.6
2,678,568	-		Sama_2215	0.87	-3.0
2,678,610	+				-2.6
2,678,611	-				-2.0