Strain Fitness in Shewanella amazonensis SB2B around Sama_2017

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
2,450,804	+		Sama_2016	0.40	+3.2
2,450,804	+		Sama_2016	0.40	+4.7
2,450,804	+		Sama_2016	0.40	+1.4
2,450,804	+		Sama_2016	0.40	-2.2
2,450,805	-		Sama_2016	0.40	-1.0
2,450,805	-		Sama_2016	0.40	-0.0
2,450,821	+		Sama_2016	0.41	-0.2
2,450,895	+		Sama_2016	0.47	-0.5
2,450,895	+		Sama_2016	0.47	-1.6
2,450,926	-		Sama_2016	0.49	+0.2
2,450,947	+		Sama_2016	0.50	-1.5
2,450,947	+		Sama_2016	0.50	+0.6
2,450,948	-		Sama_2016	0.51	-1.2
2,451,045	+		Sama_2016	0.58	+1.7
2,451,064	+		Sama_2016	0.59	+0.7
2,451,064	+		Sama_2016	0.59	-1.7
2,451,130	+		Sama_2016	0.64	-0.5
2,451,130	+		Sama_2016	0.64	-0.8
2,451,130	+		Sama_2016	0.64	+0.5
2,451,130	+		Sama_2016	0.64	-1.2
2,451,180	+		Sama_2016	0.68	+0.3
2,451,180	+		Sama_2016	0.68	+2.5
2,451,180	+		Sama_2016	0.68	+0.5
2,451,224	+		Sama_2016	0.71	-1.6
2,451,224	+		Sama_2016	0.71	+0.3
2,451,224	+		Sama_2016	0.71	-0.2
2,451,224	+		Sama_2016	0.71	+0.5
2,451,224	+		Sama_2016	0.71	-2.2
2,451,224	+		Sama_2016	0.71	-0.1
2,451,224	+		Sama_2016	0.71	+0.4
2,451,224	+		Sama_2016	0.71	+1.9
2,451,225	-		Sama_2016	0.71	-1.1
2,451,225	-		Sama_2016	0.71	-0.1
2,451,225	-		Sama_2016	0.71	+0.2
2,451,434	+		Sama_2016	0.87	+0.1
2,451,434	+		Sama_2016	0.87	+0.4
2,451,434	+		Sama_2016	0.87	-1.7
2,451,434	+		Sama_2016	0.87	-1.2
2,451,434	+		Sama_2016	0.87	-2.6
2,451,434	+		Sama_2016	0.87	+2.5
2,451,435	-		Sama_2016	0.87	-1.3
2,451,435	-		Sama_2016	0.87	+1.5
2,451,461	+		Sama_2016	0.89	+2.4
2,451,461	+		Sama_2016	0.89	-2.5
2,451,525	+				-0.4
2,451,526	-				+1.8
2,451,526	-				+0.4
2,451,551	+				-1.3
2,451,563	+				+3.1
2,451,563	+				+1.1
2,451,611	-				-0.6
2,451,611	-				+0.5
2,451,611	-				+2.3
2,451,616	+				+0.5
2,451,616	+				+0.7
2,451,617	-				+0.7
2,451,714	+				+0.1
2,451,715	-				+1.5
2,451,754	+				-2.1
2,451,754	+				-1.3
2,451,755	-				+0.2
2,451,755	-				-0.7
2,451,771	+				-0.7
2,451,793	+				+0.9
2,451,794	-				-1.8
2,451,794	-				-1.4
2,451,853	+				-0.2
2,451,885	-				-1.4
2,451,885	-				-0.2
2,451,902	+				-1.4
2,451,902	+				-0.8
2,451,903	-				-0.5
2,451,903	-				+1.8
2,451,903	-				-1.9
2,451,903	-				+2.8
2,451,906	+				+0.1
2,451,906	+				-0.5
2,451,906	+				-2.4
2,451,907	-				-2.2
2,451,907	-				-2.1
2,451,907	-				-3.0
2,451,907	-				-0.8
2,451,907	-				-1.7
2,451,981	+		Sama_2017	0.15	-0.1
2,451,981	+		Sama_2017	0.15	-2.9
2,451,982	-		Sama_2017	0.15	-1.0
2,451,982	-		Sama_2017	0.15	-0.7
2,451,982	-		Sama_2017	0.15	-0.5
2,452,153	+		Sama_2017	0.29	-0.4
2,452,211	+		Sama_2017	0.34	-1.1
2,452,230	+		Sama_2017	0.36	-1.1
2,452,230	+		Sama_2017	0.36	-0.7
2,452,230	+		Sama_2017	0.36	+0.0
2,452,230	+		Sama_2017	0.36	-1.3
2,452,230	+		Sama_2017	0.36	+0.3
2,452,230	+		Sama_2017	0.36	-2.9
2,452,230	+		Sama_2017	0.36	+0.5
2,452,231	-		Sama_2017	0.36	-0.7
2,452,231	-		Sama_2017	0.36	-2.5
2,452,231	-		Sama_2017	0.36	-0.2
2,452,241	+		Sama_2017	0.37	-0.0
2,452,241	+		Sama_2017	0.37	-1.0
2,452,242	-		Sama_2017	0.37	+0.5
2,452,242	-		Sama_2017	0.37	-1.0
2,452,242	-		Sama_2017	0.37	-1.3
2,452,242	-		Sama_2017	0.37	+1.2
2,452,244	+		Sama_2017	0.37	-2.8
2,452,245	-		Sama_2017	0.37	-0.2
2,452,245	-		Sama_2017	0.37	-1.0
2,452,286	+		Sama_2017	0.40	-1.9
2,452,320	+		Sama_2017	0.43	-0.9
2,452,321	-		Sama_2017	0.43	-0.9
2,452,336	-		Sama_2017	0.45	-0.6
2,452,360	+		Sama_2017	0.47	+3.0
2,452,361	-		Sama_2017	0.47	-0.4
2,452,361	-		Sama_2017	0.47	-2.3
2,452,363	-		Sama_2017	0.47	+0.6
2,452,372	+		Sama_2017	0.48	-0.0
2,452,438	+		Sama_2017	0.53	+1.2
2,452,480	+		Sama_2017	0.57	-2.3
2,452,532	+		Sama_2017	0.61	+1.5
2,452,533	-		Sama_2017	0.61	-0.7
2,452,542	+		Sama_2017	0.62	-1.8
2,452,542	+		Sama_2017	0.62	-0.0
2,452,610	+		Sama_2017	0.67	-2.7
2,452,658	+		Sama_2017	0.71	-0.7
2,452,658	+		Sama_2017	0.71	+1.5
2,452,658	+		Sama_2017	0.71	-1.2
2,452,659	-		Sama_2017	0.71	-0.9
2,452,709	+		Sama_2017	0.76	+1.3
2,452,731	+		Sama_2017	0.77	+0.6
2,452,732	-		Sama_2017	0.77	+0.9
2,452,736	+		Sama_2017	0.78	-0.7
2,452,736	+		Sama_2017	0.78	+1.5
2,452,736	+		Sama_2017	0.78	-3.1
2,452,736	+		Sama_2017	0.78	-0.9
2,452,737	-		Sama_2017	0.78	-0.9
2,452,779	-		Sama_2017	0.81	+2.8
2,452,799	+		Sama_2017	0.83	-2.0
2,452,800	-		Sama_2017	0.83	+1.7
2,452,849	+		Sama_2017	0.87	+0.1
2,452,850	-		Sama_2017	0.87	-0.0
2,452,905	+				-1.2
2,452,906	-				-2.1
2,453,002	-				-1.0
2,453,155	-				+0.4
2,453,155	-				+0.7
2,453,341	+				+0.5
2,453,341	+				+1.6
2,453,341	+				+2.4
2,453,341	+				-0.5
2,453,342	-				-0.8
2,453,348	+				+0.0
2,453,348	+				+2.4
2,453,348	+				-2.2
2,453,349	-				-1.4
2,453,349	-				-0.4
2,453,360	+				+0.5
2,453,360	+				-1.1
2,453,442	+				-2.2
2,453,442	+				-1.0
2,453,486	+				-1.9
2,453,486	+				-0.4
2,453,487	-				-1.0
2,453,487	-				-0.9
2,453,512	+				-0.4
2,453,512	+				-0.5
2,453,512	+				-1.3
2,453,512	+				-1.0
2,453,514	+				-1.2
2,453,595	+		Sama_2018	0.12	-2.1
2,453,596	-		Sama_2018	0.12	-1.4
2,453,599	-		Sama_2018	0.12	-1.7
2,453,654	+		Sama_2018	0.16	-1.0
2,453,654	+		Sama_2018	0.16	-0.2
2,453,654	+		Sama_2018	0.16	-2.0
2,453,654	+		Sama_2018	0.16	-2.4
2,453,825	+		Sama_2018	0.25	-1.4
2,453,825	+		Sama_2018	0.25	-0.8
2,453,825	+		Sama_2018	0.25	-1.5
2,453,826	-		Sama_2018	0.25	-2.8
2,453,906	+		Sama_2018	0.30	-1.2
2,453,906	+		Sama_2018	0.30	-0.8
2,453,906	+		Sama_2018	0.30	-1.0
2,453,939	+		Sama_2018	0.32	+0.5
2,453,939	+		Sama_2018	0.32	-0.7
2,453,939	+		Sama_2018	0.32	-1.2
2,453,939	+		Sama_2018	0.32	-0.7
2,453,940	-		Sama_2018	0.32	-0.3
2,453,940	-		Sama_2018	0.32	+0.1
2,453,940	-		Sama_2018	0.32	-0.5
2,453,940	-		Sama_2018	0.32	-1.0