Strain Fitness in Shewanella amazonensis SB2B around Sama_2016

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
2,449,279	+		Sama_2014	0.88	+0.4
2,449,280	-		Sama_2014	0.88	+0.4
2,449,335	-				+0.0
2,449,431	-				+3.7
2,449,431	-				-2.4
2,449,431	-				+0.1
2,449,517	+				-0.4
2,449,517	+				-0.8
2,449,522	+				+0.3
2,449,523	-				+1.0
2,449,523	-				-1.7
2,449,562	+				+1.1
2,449,563	-				+0.2
2,449,570	+				+0.0
2,449,571	-				+0.8
2,449,571	-				+0.2
2,449,615	-				-2.6
2,449,620	+				+1.0
2,449,681	-		Sama_2015	0.20	-1.8
2,449,702	+		Sama_2015	0.23	-1.4
2,449,702	+		Sama_2015	0.23	-2.0
2,449,703	-		Sama_2015	0.23	-0.8
2,449,703	-		Sama_2015	0.23	-2.5
2,449,703	-		Sama_2015	0.23	+0.7
2,449,703	-		Sama_2015	0.23	+1.2
2,449,703	-		Sama_2015	0.23	-0.2
2,449,703	-		Sama_2015	0.23	-1.9
2,449,703	-		Sama_2015	0.23	+0.6
2,449,703	-		Sama_2015	0.23	-0.6
2,449,707	+		Sama_2015	0.24	-0.9
2,449,708	-		Sama_2015	0.24	-1.6
2,449,711	+		Sama_2015	0.25	-2.0
2,449,711	+		Sama_2015	0.25	+0.6
2,449,712	-		Sama_2015	0.25	+4.2
2,449,762	-		Sama_2015	0.33	-0.2
2,449,849	-		Sama_2015	0.47	-2.1
2,449,909	+		Sama_2015	0.57	-2.4
2,449,909	+		Sama_2015	0.57	+0.4
2,449,909	+		Sama_2015	0.57	+0.1
2,449,910	-		Sama_2015	0.57	+0.4
2,450,023	+		Sama_2015	0.76	+0.1
2,450,024	-		Sama_2015	0.76	-2.3
2,450,034	+		Sama_2015	0.78	-1.6
2,450,115	+				-0.0
2,450,115	+				+2.9
2,450,115	+				+1.1
2,450,116	-				-1.3
2,450,129	-				+0.5
2,450,194	+				-1.0
2,450,199	+				-0.3
2,450,229	+				-1.0
2,450,230	-				-1.4
2,450,231	+				+3.7
2,450,232	+				-0.1
2,450,232	+				+1.7
2,450,232	+				-1.9
2,450,233	-				-0.2
2,450,233	-				+0.9
2,450,235	-				+1.0
2,450,262	+				-1.1
2,450,263	-				-1.1
2,450,274	+				+0.6
2,450,289	+				+1.8
2,450,290	-				-1.9
2,450,313	+				+0.1
2,450,313	+				+1.3
2,450,313	+				-2.3
2,450,314	-				-0.9
2,450,317	+				+0.5
2,450,317	+				+2.9
2,450,317	+				+2.9
2,450,317	+				-0.2
2,450,317	+				-0.9
2,450,318	-				-1.2
2,450,318	-				+1.2
2,450,339	+				+2.0
2,450,339	+				+1.2
2,450,340	-				-1.5
2,450,340	-				-1.3
2,450,340	-				-1.7
2,450,446	+		Sama_2016	0.13	-0.3
2,450,448	+		Sama_2016	0.13	+0.3
2,450,448	+		Sama_2016	0.13	+0.6
2,450,448	+		Sama_2016	0.13	+0.9
2,450,448	+		Sama_2016	0.13	-0.6
2,450,486	+		Sama_2016	0.16	+1.8
2,450,486	+		Sama_2016	0.16	-1.0
2,450,500	+		Sama_2016	0.17	+1.8
2,450,500	+		Sama_2016	0.17	-1.6
2,450,500	+		Sama_2016	0.17	+2.7
2,450,500	+		Sama_2016	0.17	+0.4
2,450,500	+		Sama_2016	0.17	-0.6
2,450,500	+		Sama_2016	0.17	+0.6
2,450,500	+		Sama_2016	0.17	-0.5
2,450,500	+		Sama_2016	0.17	+4.7
2,450,500	+		Sama_2016	0.17	-0.2
2,450,501	-		Sama_2016	0.17	-0.9
2,450,501	-		Sama_2016	0.17	-1.3
2,450,501	-		Sama_2016	0.17	+0.9
2,450,504	+		Sama_2016	0.17	+2.2
2,450,504	+		Sama_2016	0.17	+0.3
2,450,504	+		Sama_2016	0.17	-1.8
2,450,504	+		Sama_2016	0.17	-0.5
2,450,504	+		Sama_2016	0.17	-1.0
2,450,504	+		Sama_2016	0.17	+0.7
2,450,504	+		Sama_2016	0.17	-1.0
2,450,505	-		Sama_2016	0.18	-1.0
2,450,505	-		Sama_2016	0.18	+0.8
2,450,505	-		Sama_2016	0.18	-2.0
2,450,505	-		Sama_2016	0.18	-0.7
2,450,780	+		Sama_2016	0.38	+0.2
2,450,780	+		Sama_2016	0.38	+0.1
2,450,780	+		Sama_2016	0.38	-0.9
2,450,780	+		Sama_2016	0.38	-0.0
2,450,804	+		Sama_2016	0.40	+3.2
2,450,804	+		Sama_2016	0.40	+4.7
2,450,804	+		Sama_2016	0.40	+1.4
2,450,804	+		Sama_2016	0.40	-2.2
2,450,805	-		Sama_2016	0.40	-1.0
2,450,805	-		Sama_2016	0.40	-0.0
2,450,821	+		Sama_2016	0.41	-0.2
2,450,895	+		Sama_2016	0.47	-0.5
2,450,895	+		Sama_2016	0.47	-1.6
2,450,926	-		Sama_2016	0.49	+0.2
2,450,947	+		Sama_2016	0.50	-1.5
2,450,947	+		Sama_2016	0.50	+0.6
2,450,948	-		Sama_2016	0.51	-1.2
2,451,045	+		Sama_2016	0.58	+1.7
2,451,064	+		Sama_2016	0.59	+0.7
2,451,064	+		Sama_2016	0.59	-1.7
2,451,130	+		Sama_2016	0.64	-0.5
2,451,130	+		Sama_2016	0.64	-0.8
2,451,130	+		Sama_2016	0.64	+0.5
2,451,130	+		Sama_2016	0.64	-1.2
2,451,180	+		Sama_2016	0.68	+0.3
2,451,180	+		Sama_2016	0.68	+2.5
2,451,180	+		Sama_2016	0.68	+0.5
2,451,224	+		Sama_2016	0.71	-1.6
2,451,224	+		Sama_2016	0.71	+0.3
2,451,224	+		Sama_2016	0.71	-0.2
2,451,224	+		Sama_2016	0.71	+0.5
2,451,224	+		Sama_2016	0.71	-2.2
2,451,224	+		Sama_2016	0.71	-0.1
2,451,224	+		Sama_2016	0.71	+0.4
2,451,224	+		Sama_2016	0.71	+1.9
2,451,225	-		Sama_2016	0.71	-1.1
2,451,225	-		Sama_2016	0.71	-0.1
2,451,225	-		Sama_2016	0.71	+0.2
2,451,434	+		Sama_2016	0.87	+0.1
2,451,434	+		Sama_2016	0.87	+0.4
2,451,434	+		Sama_2016	0.87	-1.7
2,451,434	+		Sama_2016	0.87	-1.2
2,451,434	+		Sama_2016	0.87	-2.6
2,451,434	+		Sama_2016	0.87	+2.5
2,451,435	-		Sama_2016	0.87	-1.3
2,451,435	-		Sama_2016	0.87	+1.5
2,451,461	+		Sama_2016	0.89	+2.4
2,451,461	+		Sama_2016	0.89	-2.5
2,451,525	+				-0.4
2,451,526	-				+1.8
2,451,526	-				+0.4
2,451,551	+				-1.3
2,451,563	+				+3.1
2,451,563	+				+1.1
2,451,611	-				-0.6
2,451,611	-				+0.5
2,451,611	-				+2.3
2,451,616	+				+0.5
2,451,616	+				+0.7
2,451,617	-				+0.7
2,451,714	+				+0.1
2,451,715	-				+1.5
2,451,754	+				-2.1
2,451,754	+				-1.3
2,451,755	-				+0.2
2,451,755	-				-0.7
2,451,771	+				-0.7
2,451,793	+				+0.9
2,451,794	-				-1.8
2,451,794	-				-1.4
2,451,853	+				-0.2
2,451,885	-				-1.4
2,451,885	-				-0.2
2,451,902	+				-1.4
2,451,902	+				-0.8
2,451,903	-				-0.5
2,451,903	-				+1.8
2,451,903	-				-1.9
2,451,903	-				+2.8
2,451,906	+				+0.1
2,451,906	+				-0.5
2,451,906	+				-2.4
2,451,907	-				-2.2
2,451,907	-				-2.1
2,451,907	-				-3.0
2,451,907	-				-0.8
2,451,907	-				-1.7
2,451,981	+		Sama_2017	0.15	-0.1
2,451,981	+		Sama_2017	0.15	-2.9
2,451,982	-		Sama_2017	0.15	-1.0
2,451,982	-		Sama_2017	0.15	-0.7
2,451,982	-		Sama_2017	0.15	-0.5
2,452,153	+		Sama_2017	0.29	-0.4
2,452,211	+		Sama_2017	0.34	-1.1
2,452,230	+		Sama_2017	0.36	-1.1
2,452,230	+		Sama_2017	0.36	-0.7
2,452,230	+		Sama_2017	0.36	+0.0
2,452,230	+		Sama_2017	0.36	-1.3
2,452,230	+		Sama_2017	0.36	+0.3
2,452,230	+		Sama_2017	0.36	-2.9
2,452,230	+		Sama_2017	0.36	+0.5
2,452,231	-		Sama_2017	0.36	-0.7
2,452,231	-		Sama_2017	0.36	-2.5
2,452,231	-		Sama_2017	0.36	-0.2
2,452,241	+		Sama_2017	0.37	-0.0
2,452,241	+		Sama_2017	0.37	-1.0
2,452,242	-		Sama_2017	0.37	+0.5
2,452,242	-		Sama_2017	0.37	-1.0
2,452,242	-		Sama_2017	0.37	-1.3
2,452,242	-		Sama_2017	0.37	+1.2
2,452,244	+		Sama_2017	0.37	-2.8
2,452,245	-		Sama_2017	0.37	-0.2
2,452,245	-		Sama_2017	0.37	-1.0
2,452,286	+		Sama_2017	0.40	-1.9
2,452,320	+		Sama_2017	0.43	-0.9
2,452,321	-		Sama_2017	0.43	-0.9
2,452,336	-		Sama_2017	0.45	-0.6
2,452,360	+		Sama_2017	0.47	+3.0
2,452,361	-		Sama_2017	0.47	-0.4
2,452,361	-		Sama_2017	0.47	-2.3
2,452,363	-		Sama_2017	0.47	+0.6
2,452,372	+		Sama_2017	0.48	-0.0
2,452,438	+		Sama_2017	0.53	+1.2
2,452,480	+		Sama_2017	0.57	-2.3
2,452,532	+		Sama_2017	0.61	+1.5
2,452,533	-		Sama_2017	0.61	-0.7
2,452,542	+		Sama_2017	0.62	-1.8
2,452,542	+		Sama_2017	0.62	-0.0
2,452,610	+		Sama_2017	0.67	-2.7