Strain Fitness in Shewanella amazonensis SB2B around Sama_2005

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
2,434,680	+				-0.8
2,434,694	+				-0.6
2,434,694	+				-0.6
2,434,870	+		Sama_2004	0.22	+2.7
2,434,871	-		Sama_2004	0.22	-0.8
2,434,915	+		Sama_2004	0.28	-0.1
2,434,916	-		Sama_2004	0.28	-0.3
2,435,057	+		Sama_2004	0.48	+0.5
2,435,057	+		Sama_2004	0.48	-1.0
2,435,070	-		Sama_2004	0.50	-1.7
2,435,070	-		Sama_2004	0.50	+0.0
2,435,070	-		Sama_2004	0.50	-1.0
2,435,070	-		Sama_2004	0.50	+3.1
2,435,135	-		Sama_2004	0.59	-2.7
2,435,135	-		Sama_2004	0.59	-1.4
2,435,155	+		Sama_2004	0.62	-3.1
2,435,216	+		Sama_2004	0.70	-0.4
2,435,216	+		Sama_2004	0.70	+0.8
2,435,226	-		Sama_2004	0.71	+2.5
2,435,226	-		Sama_2004	0.71	-2.4
2,435,226	-		Sama_2004	0.71	+0.6
2,435,280	+		Sama_2004	0.79	-1.9
2,435,281	-		Sama_2004	0.79	+0.5
2,435,281	-		Sama_2004	0.79	+0.7
2,435,281	-		Sama_2004	0.79	-1.4
2,435,292	+		Sama_2004	0.80	+0.1
2,435,293	-		Sama_2004	0.81	-2.4
2,435,405	+				+2.5
2,435,418	+				-1.2
2,435,432	+				-0.4
2,435,488	+				+0.5
2,435,488	+				+1.1
2,435,488	+				-0.4
2,435,488	+				-0.5
2,435,489	-				-0.4
2,435,489	-				-2.1
2,435,489	-				-0.5
2,435,492	+				+0.9
2,435,492	+				-1.9
2,435,492	+				+0.6
2,435,492	+				-0.5
2,435,493	-				+0.0
2,435,493	-				-0.3
2,435,493	-				-0.3
2,435,536	+				+1.9
2,435,537	-				-0.6
2,435,537	-				+1.1
2,435,537	-				+0.1
2,435,540	+				-0.7
2,435,593	-				+0.2
2,435,593	-				-2.2
2,435,602	+				-0.6
2,435,602	+				+0.2
2,435,603	-				-2.2
2,435,603	-				+1.5
2,435,603	-				-1.1
2,435,614	+				+1.1
2,435,614	+				-1.7
2,435,615	-				-0.7
2,435,645	+				-1.7
2,435,720	-				+0.2
2,435,746	+		Sama_2005	0.11	+2.9
2,435,746	+		Sama_2005	0.11	-0.3
2,435,746	+		Sama_2005	0.11	+1.9
2,435,747	-		Sama_2005	0.11	+0.4
2,435,747	-		Sama_2005	0.11	+4.3
2,435,747	-		Sama_2005	0.11	+0.3
2,435,747	-		Sama_2005	0.11	+0.3
2,435,820	+		Sama_2005	0.21	-0.6
2,435,822	+		Sama_2005	0.22	-0.4
2,435,822	+		Sama_2005	0.22	-0.2
2,435,822	+		Sama_2005	0.22	+2.4
2,435,822	+		Sama_2005	0.22	+0.2
2,435,822	+		Sama_2005	0.22	+0.6
2,435,822	+		Sama_2005	0.22	+0.4
2,435,822	+		Sama_2005	0.22	+3.9
2,435,822	+		Sama_2005	0.22	-1.3
2,435,822	+		Sama_2005	0.22	+3.0
2,435,822	+		Sama_2005	0.22	+1.7
2,435,822	+		Sama_2005	0.22	-2.1
2,435,823	-		Sama_2005	0.22	+0.9
2,435,823	-		Sama_2005	0.22	-0.8
2,435,823	-		Sama_2005	0.22	-0.3
2,435,823	-		Sama_2005	0.22	+0.5
2,435,823	-		Sama_2005	0.22	-1.4
2,435,823	-		Sama_2005	0.22	+1.7
2,435,823	-		Sama_2005	0.22	-2.1
2,435,823	-		Sama_2005	0.22	-2.1
2,435,823	-		Sama_2005	0.22	+1.5
2,435,823	-		Sama_2005	0.22	-0.1
2,435,823	-		Sama_2005	0.22	-1.5
2,435,826	+		Sama_2005	0.22	-0.7
2,435,826	+		Sama_2005	0.22	-1.5
2,435,827	-		Sama_2005	0.22	-1.3
2,435,827	-		Sama_2005	0.22	+2.8
2,435,971	+		Sama_2005	0.43	+1.5
2,435,972	-		Sama_2005	0.43	-1.0
2,435,972	-		Sama_2005	0.43	+1.7
2,435,972	-		Sama_2005	0.43	+1.9
2,435,972	-		Sama_2005	0.43	-0.3
2,435,974	-		Sama_2005	0.44	-1.7
2,436,046	-		Sama_2005	0.54	-1.5
2,436,046	-		Sama_2005	0.54	-0.8
2,436,095	+		Sama_2005	0.61	+0.7
2,436,095	+		Sama_2005	0.61	-1.3
2,436,095	+		Sama_2005	0.61	+0.4
2,436,096	-		Sama_2005	0.61	-2.2
2,436,096	-		Sama_2005	0.61	-0.9
2,436,096	-		Sama_2005	0.61	-1.5
2,436,096	-		Sama_2005	0.61	+0.1
2,436,096	-		Sama_2005	0.61	-2.9
2,436,096	-		Sama_2005	0.61	+1.6
2,436,096	-		Sama_2005	0.61	-1.7
2,436,096	-		Sama_2005	0.61	-0.7
2,436,096	-		Sama_2005	0.61	-1.0
2,436,096	-		Sama_2005	0.61	+0.3
2,436,119	-		Sama_2005	0.64	-0.7
2,436,266	+		Sama_2005	0.85	+0.9
2,436,266	+		Sama_2005	0.85	+3.1
2,436,266	+		Sama_2005	0.85	+2.7
2,436,267	-		Sama_2005	0.86	-1.7
2,436,267	-		Sama_2005	0.86	-0.6
2,436,267	-		Sama_2005	0.86	-0.2
2,436,267	-		Sama_2005	0.86	+0.2
2,436,267	-		Sama_2005	0.86	+0.2
2,436,267	-		Sama_2005	0.86	-1.2
2,436,267	-		Sama_2005	0.86	-0.3
2,436,267	-		Sama_2005	0.86	+0.4
2,436,267	-		Sama_2005	0.86	+0.7
2,436,267	-		Sama_2005	0.86	+0.2
2,436,267	-		Sama_2005	0.86	-0.1
2,436,328	+				-2.8
2,436,328	+				-2.3
2,436,329	-				+3.9
2,436,447	+				-1.7
2,436,447	+				+1.1
2,436,448	-				+0.4
2,436,448	-				+1.3
2,436,448	-				-1.9
2,436,448	-				-2.8
2,436,448	-				+2.4
2,436,448	-				+1.5
2,436,491	+				-2.0
2,436,492	-				-0.1
2,436,590	+		Sama_2006	0.11	-0.6
2,436,591	-		Sama_2006	0.11	-0.4
2,436,601	-		Sama_2006	0.11	+0.3
2,436,681	+		Sama_2006	0.15	-1.0
2,436,681	+		Sama_2006	0.15	-1.1
2,436,681	+		Sama_2006	0.15	+0.3
2,436,682	-		Sama_2006	0.15	+1.3
2,436,682	-		Sama_2006	0.15	-1.2
2,436,692	+		Sama_2006	0.15	+0.4
2,436,693	-		Sama_2006	0.15	+1.2
2,436,693	-		Sama_2006	0.15	-2.7
2,436,693	-		Sama_2006	0.15	-0.7
2,436,693	-		Sama_2006	0.15	-2.4
2,436,693	-		Sama_2006	0.15	+1.9
2,436,700	+		Sama_2006	0.16	-0.8
2,436,701	-		Sama_2006	0.16	-0.7
2,436,737	+		Sama_2006	0.17	-1.8
2,436,737	+		Sama_2006	0.17	+0.8
2,436,737	+		Sama_2006	0.17	-1.7
2,436,737	+		Sama_2006	0.17	-0.5
2,436,738	-		Sama_2006	0.17	-0.7
2,436,738	-		Sama_2006	0.17	-0.1
2,436,738	-		Sama_2006	0.17	+0.7
2,436,738	-		Sama_2006	0.17	+3.5
2,436,755	+		Sama_2006	0.18	-2.4
2,436,755	+		Sama_2006	0.18	+0.4
2,436,759	+		Sama_2006	0.18	+0.1
2,436,759	+		Sama_2006	0.18	+0.8
2,436,760	-		Sama_2006	0.18	-2.2
2,436,760	-		Sama_2006	0.18	-1.1
2,436,760	-		Sama_2006	0.18	-1.4
2,436,801	+		Sama_2006	0.20	+4.1
2,436,815	+		Sama_2006	0.21	+4.5
2,436,840	+		Sama_2006	0.22	+1.1
2,436,840	+		Sama_2006	0.22	-1.2
2,436,885	+		Sama_2006	0.24	-0.1
2,436,885	+		Sama_2006	0.24	-2.0
2,436,885	+		Sama_2006	0.24	+0.9
2,437,011	+		Sama_2006	0.30	+1.8
2,437,012	-		Sama_2006	0.30	+2.6
2,437,156	+		Sama_2006	0.37	+2.0
2,437,156	+		Sama_2006	0.37	+2.1
2,437,156	+		Sama_2006	0.37	-1.9
2,437,157	-		Sama_2006	0.37	-2.4
2,437,157	-		Sama_2006	0.37	-1.9
2,437,157	-		Sama_2006	0.37	+0.1
2,437,157	-		Sama_2006	0.37	+1.2
2,437,157	-		Sama_2006	0.37	-1.9
2,437,162	+		Sama_2006	0.37	-0.2
2,437,163	-		Sama_2006	0.37	-1.3
2,437,229	-		Sama_2006	0.40	-1.9
2,437,362	+		Sama_2006	0.46	-0.2
2,437,362	+		Sama_2006	0.46	-1.3
2,437,362	+		Sama_2006	0.46	-2.4
2,437,363	-		Sama_2006	0.46	+1.8
2,437,363	-		Sama_2006	0.46	-2.3