Strain Fitness in Shewanella amazonensis SB2B around Sama_1234

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1232 and Sama_1233 are separated by 2 nucleotidesSama_1233 and Sama_1234 overlap by 14 nucleotidesSama_1234 and Sama_1235 overlap by 1 nucleotides Sama_1232: Sama_1232 - peptide ABC transporter, ATP-binding protein (RefSeq), at 1,516,343 to 1,517,350 _1232 Sama_1233: Sama_1233 - peptide ABC transporter, permease protein (RefSeq), at 1,517,353 to 1,518,243 _1233 Sama_1234: Sama_1234 - peptide ABC transporter, permease protein (RefSeq), at 1,518,230 to 1,519,261 _1234 Sama_1235: Sama_1235 - peptide ABC transporter, periplasmic peptide-binding protein (RefSeq), at 1,519,261 to 1,520,889 _1235 Position (kb) 1518 1519 1520Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1517.351 kb on - strandat 1517.383 kb on + strandat 1517.384 kb on - strandat 1517.384 kb on - strandat 1517.464 kb on - strand, within Sama_1233at 1517.489 kb on - strand, within Sama_1233at 1517.551 kb on + strand, within Sama_1233at 1517.810 kb on - strand, within Sama_1233at 1517.983 kb on + strand, within Sama_1233at 1518.055 kb on + strand, within Sama_1233at 1518.244 kb on - strandat 1518.244 kb on - strandat 1518.282 kb on - strandat 1518.354 kb on + strand, within Sama_1234at 1518.367 kb on - strand, within Sama_1234at 1518.556 kb on - strand, within Sama_1234at 1518.596 kb on - strand, within Sama_1234at 1519.065 kb on + strand, within Sama_1234at 1519.156 kb on - strand, within Sama_1234at 1519.156 kb on - strand, within Sama_1234at 1519.212 kb on - strandat 1519.252 kb on - strandat 1519.252 kb on - strandat 1519.252 kb on - strandat 1519.252 kb on - strandat 1519.252 kb on - strandat 1519.256 kb on - strandat 1519.256 kb on - strandat 1519.329 kb on + strandat 1519.330 kb on - strandat 1519.512 kb on + strand, within Sama_1235at 1519.513 kb on - strand, within Sama_1235at 1519.608 kb on - strand, within Sama_1235at 1519.650 kb on - strand, within Sama_1235at 1519.650 kb on - strand, within Sama_1235at 1519.650 kb on - strand, within Sama_1235at 1519.699 kb on - strand, within Sama_1235at 1519.730 kb on + strand, within Sama_1235at 1519.730 kb on + strand, within Sama_1235at 1519.731 kb on - strand, within Sama_1235at 1519.821 kb on - strand, within Sama_1235at 1519.821 kb on - strand, within Sama_1235at 1519.839 kb on - strand, within Sama_1235at 1519.851 kb on - strand, within Sama_1235at 1519.906 kb on + strand, within Sama_1235at 1519.906 kb on + strand, within Sama_1235at 1519.929 kb on + strand, within Sama_1235at 1519.930 kb on - strand, within Sama_1235at 1519.934 kb on - strand, within Sama_1235at 1519.934 kb on - strand, within Sama_1235at 1519.934 kb on - strand, within Sama_1235at 1520.038 kb on - strand, within Sama_1235at 1520.123 kb on - strand, within Sama_1235at 1520.154 kb on - strand, within Sama_1235at 1520.154 kb on - strand, within Sama_1235at 1520.167 kb on + strand, within Sama_1235at 1520.216 kb on + strand, within Sama_1235at 1520.231 kb on + strand, within Sama_1235at 1520.232 kb on - strand, within Sama_1235

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,517,351 - -1.3
1,517,383 + -0.4
1,517,384 - -1.5
1,517,384 - -3.4
1,517,464 - Sama_1233 0.12 -0.4
1,517,489 - Sama_1233 0.15 -2.2
1,517,551 + Sama_1233 0.22 -0.8
1,517,810 - Sama_1233 0.51 -1.3
1,517,983 + Sama_1233 0.71 -1.4
1,518,055 + Sama_1233 0.79 -2.0
1,518,244 - -3.4
1,518,244 - -3.6
1,518,282 - -2.1
1,518,354 + Sama_1234 0.12 -0.4
1,518,367 - Sama_1234 0.13 -1.5
1,518,556 - Sama_1234 0.32 -0.4
1,518,596 - Sama_1234 0.35 -0.3
1,519,065 + Sama_1234 0.81 -1.0
1,519,156 - Sama_1234 0.90 -0.6
1,519,156 - Sama_1234 0.90 -1.2
1,519,212 - -1.4
1,519,252 - -1.8
1,519,252 - -0.4
1,519,252 - -1.0
1,519,252 - +1.1
1,519,252 - -1.5
1,519,256 - -1.3
1,519,256 - -0.7
1,519,329 + -1.3
1,519,330 - -2.1
1,519,512 + Sama_1235 0.15 -2.3
1,519,513 - Sama_1235 0.15 -2.1
1,519,608 - Sama_1235 0.21 -2.2
1,519,650 - Sama_1235 0.24 -1.6
1,519,650 - Sama_1235 0.24 -1.5
1,519,650 - Sama_1235 0.24 -0.6
1,519,699 - Sama_1235 0.27 -2.5
1,519,730 + Sama_1235 0.29 -1.0
1,519,730 + Sama_1235 0.29 -0.8
1,519,731 - Sama_1235 0.29 -3.0
1,519,821 - Sama_1235 0.34 -2.4
1,519,821 - Sama_1235 0.34 -2.3
1,519,839 - Sama_1235 0.35 +1.8
1,519,851 - Sama_1235 0.36 -1.2
1,519,906 + Sama_1235 0.40 -0.7
1,519,906 + Sama_1235 0.40 +0.2
1,519,929 + Sama_1235 0.41 -0.4
1,519,930 - Sama_1235 0.41 -2.0
1,519,934 - Sama_1235 0.41 -0.7
1,519,934 - Sama_1235 0.41 -0.6
1,519,934 - Sama_1235 0.41 -2.0
1,520,038 - Sama_1235 0.48 -0.3
1,520,123 - Sama_1235 0.53 -1.0
1,520,154 - Sama_1235 0.55 -2.3
1,520,154 - Sama_1235 0.55 -1.4
1,520,167 + Sama_1235 0.56 -1.0
1,520,216 + Sama_1235 0.59 -1.4
1,520,231 + Sama_1235 0.60 +0.7
1,520,232 - Sama_1235 0.60 -0.8

Or see this region's nucleotide sequence