Strain Fitness in Shewanella amazonensis SB2B around Sama_0933

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
1,126,723	+				-2.6
1,126,797	+				+0.9
1,126,824	+				-1.3
1,126,829	-				-0.2
1,126,907	+				-0.4
1,126,925	+				-0.2
1,126,925	+				+1.9
1,126,925	+				+3.3
1,126,950	+				-0.7
1,127,024	+		Sama_0932	0.20	-1.2
1,127,025	-		Sama_0932	0.20	+2.2
1,127,038	+		Sama_0932	0.23	-1.3
1,127,038	+		Sama_0932	0.23	+0.1
1,127,043	+		Sama_0932	0.25	-1.7
1,127,043	+		Sama_0932	0.25	-1.3
1,127,044	-		Sama_0932	0.25	-0.2
1,127,044	-		Sama_0932	0.25	-2.3
1,127,047	+		Sama_0932	0.26	+0.2
1,127,047	+		Sama_0932	0.26	-2.0
1,127,117	-		Sama_0932	0.43	-0.4
1,127,137	+		Sama_0932	0.48	+1.4
1,127,165	+		Sama_0932	0.55	-0.5
1,127,200	+		Sama_0932	0.64	-1.0
1,127,202	+		Sama_0932	0.64	+1.4
1,127,203	-		Sama_0932	0.65	-0.2
1,127,238	+		Sama_0932	0.73	+1.0
1,127,268	+		Sama_0932	0.81	-2.3
1,127,292	+		Sama_0932	0.87	+0.1
1,127,292	+		Sama_0932	0.87	-1.1
1,127,345	+				+2.6
1,127,362	+				+1.3
1,127,390	+				+2.8
1,127,391	-				-0.5
1,127,403	+				-1.8
1,127,403	+				-0.3
1,127,421	+				-0.3
1,127,422	-				-0.9
1,127,423	+				-0.0
1,127,423	+				-1.4
1,127,424	-				-0.8
1,127,512	+				+1.9
1,127,534	+				+1.5
1,127,534	+				-2.6
1,127,538	-				-1.9
1,127,550	+				-2.3
1,127,588	+				+2.6
1,127,625	-				-2.3
1,127,631	-				-0.5
1,127,695	+				+1.4
1,127,696	-				-1.7
1,127,728	+				+1.3
1,127,728	+				-0.0
1,127,729	-				-1.3
1,127,729	-				-1.3
1,127,745	-				+2.6
1,127,745	-				+1.3
1,127,745	-				-0.1
1,127,752	-				-1.3
1,127,752	-				-1.8
1,127,753	+		Sama_0933	0.10	+2.6
1,127,753	+		Sama_0933	0.10	-0.7
1,127,753	+		Sama_0933	0.10	+0.1
1,127,753	+		Sama_0933	0.10	-2.0
1,127,753	+		Sama_0933	0.10	-0.7
1,127,753	+		Sama_0933	0.10	+0.3
1,127,754	-		Sama_0933	0.10	-0.7
1,127,754	-		Sama_0933	0.10	-1.5
1,127,794	+		Sama_0933	0.18	-0.5
1,127,794	+		Sama_0933	0.18	+3.9
1,127,795	-		Sama_0933	0.19	+0.3
1,127,795	-		Sama_0933	0.19	-0.7
1,127,795	-		Sama_0933	0.19	+0.8
1,127,799	+		Sama_0933	0.20	-0.9
1,127,799	+		Sama_0933	0.20	+0.6
1,127,886	+		Sama_0933	0.37	-0.0
1,127,889	-		Sama_0933	0.38	+1.7
1,127,925	-		Sama_0933	0.45	+2.7
1,127,928	-		Sama_0933	0.46	-0.5
1,127,929	+		Sama_0933	0.46	-1.7
1,127,930	-		Sama_0933	0.46	-0.5
1,127,937	+		Sama_0933	0.48	-0.1
1,127,938	-		Sama_0933	0.48	+1.9
1,127,939	+		Sama_0933	0.48	+0.7
1,127,940	-		Sama_0933	0.48	-2.5
1,127,973	-		Sama_0933	0.55	-0.9
1,127,973	-		Sama_0933	0.55	-0.9
1,127,973	-		Sama_0933	0.55	-0.8
1,128,000	-		Sama_0933	0.60	+0.3
1,128,013	+		Sama_0933	0.63	+3.4
1,128,014	-		Sama_0933	0.63	+0.8
1,128,014	-		Sama_0933	0.63	-1.0
1,128,111	+		Sama_0933	0.83	-2.2
1,128,112	-		Sama_0933	0.83	+3.7
1,128,119	+		Sama_0933	0.85	-0.5
1,128,120	-		Sama_0933	0.85	-0.8
1,128,120	-		Sama_0933	0.85	+0.1
1,128,123	+		Sama_0933	0.85	+1.0
1,128,129	+		Sama_0933	0.87	-0.9
1,128,130	-		Sama_0933	0.87	+3.3
1,128,130	-		Sama_0933	0.87	+0.2
1,128,166	-				+0.8
1,128,170	+				-1.1
1,128,171	-				-1.6
1,128,189	-				-0.0
1,128,196	+				-1.2
1,128,199	-				+0.3
1,128,199	-				+0.4
1,128,212	+				+0.5
1,128,212	+				-1.3
1,128,227	+				-1.6
1,128,253	-				-1.9
1,128,291	+				+2.0
1,128,292	-				+0.7
1,128,296	+				-2.0
1,128,297	-				-0.5
1,128,301	+				+1.4
1,128,301	+				-3.5
1,128,301	+				-2.3
1,128,301	+				+0.1
1,128,302	-				+2.3
1,128,302	-				-0.4
1,128,302	-				-1.4
1,128,351	+				-0.3
1,128,351	+				-0.2
1,128,351	+				-0.8
1,128,352	-				-2.0
1,128,368	+		Sama_0934	0.11	-1.5
1,128,372	+		Sama_0934	0.12	+1.1
1,128,372	+		Sama_0934	0.12	+0.2
1,128,372	+		Sama_0934	0.12	+1.0
1,128,416	-		Sama_0934	0.20	-2.6
1,128,481	+		Sama_0934	0.33	+0.9
1,128,481	+		Sama_0934	0.33	-1.0
1,128,481	+		Sama_0934	0.33	-0.2
1,128,482	-		Sama_0934	0.33	-0.4
1,128,482	-		Sama_0934	0.33	-1.9
1,128,482	-		Sama_0934	0.33	+0.8
1,128,488	+		Sama_0934	0.34	-1.6
1,128,488	+		Sama_0934	0.34	+0.5
1,128,488	+		Sama_0934	0.34	-1.7
1,128,488	+		Sama_0934	0.34	+0.6
1,128,525	+		Sama_0934	0.42	-3.0
1,128,526	-		Sama_0934	0.42	+1.3
1,128,526	-		Sama_0934	0.42	-0.4
1,128,529	-		Sama_0934	0.42	-0.8
1,128,529	-		Sama_0934	0.42	-0.9
1,128,529	-		Sama_0934	0.42	-2.6
1,128,529	-		Sama_0934	0.42	+1.8
1,128,529	-		Sama_0934	0.42	+0.9
1,128,543	+		Sama_0934	0.45	-2.2
1,128,551	+		Sama_0934	0.47	+0.2
1,128,573	+		Sama_0934	0.51	+0.2
1,128,573	+		Sama_0934	0.51	+1.5
1,128,574	-		Sama_0934	0.51	-0.9
1,128,627	+		Sama_0934	0.61	+0.4
1,128,627	+		Sama_0934	0.61	-2.3
1,128,627	+		Sama_0934	0.61	-0.6
1,128,627	+		Sama_0934	0.61	-0.3
1,128,627	+		Sama_0934	0.61	-2.2
1,128,660	-		Sama_0934	0.68	-0.8
1,128,696	+		Sama_0934	0.75	-1.4
1,128,716	+		Sama_0934	0.79	+0.6
1,128,716	+		Sama_0934	0.79	-0.1
1,128,716	+		Sama_0934	0.79	-1.0
1,128,726	+		Sama_0934	0.81	-0.2
1,128,726	+		Sama_0934	0.81	-1.3
1,128,726	+		Sama_0934	0.81	-1.7
1,128,727	-		Sama_0934	0.81	+0.9
1,128,735	-		Sama_0934	0.82	-2.0
1,128,762	+		Sama_0934	0.88	-0.8
1,128,762	+		Sama_0934	0.88	-0.7
1,128,762	+		Sama_0934	0.88	-2.1
1,128,763	-		Sama_0934	0.88	-0.5
1,128,763	-		Sama_0934	0.88	-1.7
1,128,763	-		Sama_0934	0.88	-0.5
1,128,789	+				-0.2
1,128,795	+				-0.8
1,128,796	-				+0.4
1,128,796	-				+5.4
1,128,803	+				+1.8
1,128,803	+				-0.5
1,128,803	+				+0.8
1,128,824	+				-1.6
1,128,840	+				-0.4
1,128,840	+				-0.4
1,128,840	+				+0.8
1,128,841	-				+0.8
1,128,841	-				+1.7
1,128,841	-				-0.2
1,128,841	-				+1.3
1,128,897	+				+0.6
1,128,898	-				-0.7
1,128,898	-				-0.1
1,128,899	+				+1.8
1,128,900	-				+0.6
1,128,900	-				-0.5
1,128,930	+				+2.0
1,128,930	+				-1.1
1,128,931	-				+2.0
1,128,932	+				-0.7
1,128,932	+				-0.6
1,128,932	+				+0.0
1,128,933	-				+0.5
1,128,933	-				+1.6
1,128,934	+				-2.8
1,128,934	+				+2.2
1,128,934	+				+2.9
1,128,934	+				+2.2
1,128,935	-				-1.6
1,128,935	-				-0.8
1,128,947	+				-0.5
1,128,953	+				+1.3
1,128,953	+				-2.3
1,128,966	+				-0.3
1,128,984	+				-1.3
1,128,998	+				+0.6
1,128,998	+				+4.0
1,128,999	-				+1.8
1,128,999	-				+1.6
1,129,002	-				+1.3
1,129,006	-				-2.1
1,129,006	-				-1.7
1,129,031	+				-1.2
1,129,177	+		Sama_0935	0.39	+2.4
1,129,177	+		Sama_0935	0.39	+1.7
1,129,179	+		Sama_0935	0.40	-1.1
1,129,194	+		Sama_0935	0.44	-0.9
1,129,194	+		Sama_0935	0.44	+1.2
1,129,194	+		Sama_0935	0.44	-1.7
1,129,194	+		Sama_0935	0.44	-0.8
1,129,194	+		Sama_0935	0.44	-2.2
1,129,194	+		Sama_0935	0.44	-1.0
1,129,194	+		Sama_0935	0.44	-0.4
1,129,194	+		Sama_0935	0.44	-0.1