Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0644 and Sama_0645 are separated by 150 nucleotides Sama_0645 and Sama_0646 are separated by 44 nucleotides Sama_0646 and Sama_0647 overlap by 8 nucleotides
Sama_0644: Sama_0644 - magnesium transporter, putative (RefSeq), at 799,759 to 800,724
_0644
Sama_0645: Sama_0645 - hypothetical protein (RefSeq), at 800,875 to 801,249
_0645
Sama_0646: Sama_0646 - response regulator receiver protein (RefSeq), at 801,294 to 801,923
_0646
Sama_0647: Sama_0647 - nitrate/nitrite sensor protein NarQ (RefSeq), at 801,916 to 803,628
_0647
Position (kb) 800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 799.916 kb on - strand, within Sama_0644 at 799.916 kb on - strand, within Sama_0644 at 799.916 kb on - strand, within Sama_0644 at 799.940 kb on + strand, within Sama_0644 at 799.953 kb on + strand, within Sama_0644 at 799.953 kb on + strand, within Sama_0644 at 800.085 kb on + strand, within Sama_0644 at 800.085 kb on + strand, within Sama_0644 at 800.086 kb on - strand, within Sama_0644 at 800.118 kb on + strand, within Sama_0644 at 800.119 kb on - strand, within Sama_0644 at 800.144 kb on + strand, within Sama_0644 at 800.144 kb on + strand, within Sama_0644 at 800.262 kb on + strand, within Sama_0644 at 800.263 kb on - strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.285 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.345 kb on - strand, within Sama_0644 at 800.357 kb on - strand, within Sama_0644 at 800.410 kb on - strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.467 kb on + strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.603 kb on + strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.622 kb on + strand, within Sama_0644 at 800.622 kb on + strand, within Sama_0644 at 800.623 kb on - strand, within Sama_0644 at 800.623 kb on - strand, within Sama_0644 at 800.699 kb on + strand at 800.699 kb on + strand at 800.699 kb on + strand at 800.699 kb on + strand at 800.700 kb on - strand at 800.700 kb on - strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.757 kb on + strand at 800.757 kb on + strand at 800.757 kb on + strand at 800.758 kb on - strand at 800.785 kb on - strand at 800.785 kb on - strand at 800.821 kb on + strand at 800.821 kb on + strand at 800.822 kb on - strand at 800.822 kb on - strand at 800.822 kb on - strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.869 kb on + strand at 800.869 kb on + strand at 800.869 kb on + strand at 800.874 kb on + strand at 800.874 kb on + strand at 800.875 kb on - strand at 800.881 kb on + strand at 800.882 kb on - strand at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.003 kb on - strand, within Sama_0645 at 801.003 kb on - strand, within Sama_0645 at 801.005 kb on + strand, within Sama_0645 at 801.012 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.104 kb on - strand, within Sama_0645 at 801.104 kb on - strand, within Sama_0645 at 801.121 kb on + strand, within Sama_0645 at 801.161 kb on - strand, within Sama_0645 at 801.200 kb on + strand, within Sama_0645 at 801.201 kb on - strand, within Sama_0645 at 801.233 kb on + strand at 801.295 kb on + strand at 801.295 kb on + strand at 801.307 kb on + strand at 801.308 kb on - strand at 801.369 kb on + strand, within Sama_0646 at 801.369 kb on + strand, within Sama_0646 at 801.477 kb on + strand, within Sama_0646 at 801.477 kb on + strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.520 kb on + strand, within Sama_0646 at 801.521 kb on - strand, within Sama_0646 at 801.521 kb on - strand, within Sama_0646 at 801.521 kb on - strand, within Sama_0646 at 801.614 kb on - strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.646 kb on - strand, within Sama_0646 at 801.646 kb on - strand, within Sama_0646 at 801.656 kb on + strand, within Sama_0646 at 801.656 kb on + strand, within Sama_0646 at 801.656 kb on + strand, within Sama_0646 at 801.657 kb on - strand, within Sama_0646 at 801.762 kb on + strand, within Sama_0646 at 801.762 kb on + strand, within Sama_0646 at 801.762 kb on + strand, within Sama_0646 at 801.762 kb on + strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.763 kb on - strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.764 kb on + strand, within Sama_0646 at 801.765 kb on - strand, within Sama_0646 at 801.765 kb on - strand, within Sama_0646 at 801.765 kb on - strand, within Sama_0646 at 801.765 kb on - strand, within Sama_0646 at 801.895 kb on - strand at 801.910 kb on + strand at 801.911 kb on - strand at 801.917 kb on + strand at 801.917 kb on + strand at 801.918 kb on - strand at 801.969 kb on + strand at 801.970 kb on - strand at 801.970 kb on - strand at 802.075 kb on + strand at 802.075 kb on + strand at 802.075 kb on + strand at 802.075 kb on + strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.076 kb on - strand at 802.077 kb on + strand at 802.078 kb on - strand at 802.104 kb on + strand, within Sama_0647 at 802.104 kb on + strand, within Sama_0647 at 802.105 kb on - strand, within Sama_0647 at 802.113 kb on + strand, within Sama_0647 at 802.113 kb on + strand, within Sama_0647 at 802.113 kb on + strand, within Sama_0647 at 802.113 kb on + strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.114 kb on - strand, within Sama_0647 at 802.123 kb on - strand, within Sama_0647 at 802.128 kb on + strand, within Sama_0647 at 802.128 kb on + strand, within Sama_0647 at 802.169 kb on - strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.177 kb on + strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.178 kb on - strand, within Sama_0647 at 802.196 kb on - strand, within Sama_0647 at 802.204 kb on + strand, within Sama_0647
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 799,916 - Sama_0644 0.16 -2.0 799,916 - Sama_0644 0.16 +2.8 799,916 - Sama_0644 0.16 +1.0 799,940 + Sama_0644 0.19 +0.2 799,953 + Sama_0644 0.20 -1.9 799,953 + Sama_0644 0.20 -1.2 800,085 + Sama_0644 0.34 -0.4 800,085 + Sama_0644 0.34 +0.5 800,086 - Sama_0644 0.34 -1.4 800,118 + Sama_0644 0.37 +0.5 800,119 - Sama_0644 0.37 +4.5 800,144 + Sama_0644 0.40 -1.9 800,144 + Sama_0644 0.40 +0.2 800,262 + Sama_0644 0.52 -1.8 800,263 - Sama_0644 0.52 -0.8 800,284 + Sama_0644 0.54 -0.6 800,284 + Sama_0644 0.54 +0.3 800,284 + Sama_0644 0.54 -2.6 800,285 - Sama_0644 0.54 -1.5 800,308 - Sama_0644 0.57 -0.7 800,308 - Sama_0644 0.57 +0.3 800,308 - Sama_0644 0.57 +0.9 800,308 - Sama_0644 0.57 -0.8 800,344 + Sama_0644 0.61 -1.0 800,344 + Sama_0644 0.61 +0.5 800,344 + Sama_0644 0.61 -0.4 800,344 + Sama_0644 0.61 +0.6 800,344 + Sama_0644 0.61 -1.0 800,345 - Sama_0644 0.61 +2.6 800,357 - Sama_0644 0.62 -0.4 800,410 - Sama_0644 0.67 +2.0 800,424 + Sama_0644 0.69 +1.5 800,424 + Sama_0644 0.69 -0.7 800,424 + Sama_0644 0.69 -1.4 800,467 + Sama_0644 0.73 -2.7 800,468 - Sama_0644 0.73 -0.5 800,468 - Sama_0644 0.73 -0.0 800,468 - Sama_0644 0.73 +2.8 800,603 + Sama_0644 0.87 -1.1 800,604 - Sama_0644 0.87 -1.7 800,604 - Sama_0644 0.87 +0.7 800,604 - Sama_0644 0.87 +3.4 800,604 - Sama_0644 0.87 -0.5 800,604 - Sama_0644 0.87 +1.2 800,604 - Sama_0644 0.87 +1.8 800,604 - Sama_0644 0.87 +0.6 800,622 + Sama_0644 0.89 +4.3 800,622 + Sama_0644 0.89 +1.2 800,623 - Sama_0644 0.89 -0.4 800,623 - Sama_0644 0.89 -0.2 800,699 + -1.2 800,699 + -2.8 800,699 + -0.3 800,699 + -3.2 800,700 - -1.2 800,700 - +1.0 800,705 + +1.6 800,705 + -1.9 800,705 + -1.2 800,705 + -0.4 800,705 + +3.5 800,705 + +1.7 800,705 + -1.7 800,705 + -0.9 800,705 + +1.7 800,705 + +0.1 800,705 + +1.7 800,705 + -0.9 800,705 + +1.9 800,706 - +0.1 800,706 - +1.0 800,706 - -1.7 800,706 - +0.4 800,706 - +0.6 800,706 - -0.6 800,706 - -0.4 800,757 + -0.1 800,757 + -1.3 800,757 + -0.5 800,758 - +0.3 800,785 - -1.3 800,785 - +2.2 800,821 + -1.5 800,821 + +1.0 800,822 - -0.3 800,822 - -0.0 800,822 - +1.0 800,823 + -1.5 800,823 + -0.3 800,823 + -0.3 800,823 + -1.9 800,823 + -1.6 800,823 + -1.9 800,823 + -1.5 800,823 + +0.4 800,824 - -0.2 800,824 - +2.6 800,824 - +1.3 800,824 - +1.7 800,824 - +0.0 800,824 - -0.7 800,824 - -0.7 800,869 + -1.9 800,869 + +0.3 800,869 + -0.2 800,874 + +0.2 800,874 + -1.5 800,875 - -2.3 800,881 + +0.6 800,882 - -0.7 801,002 + Sama_0645 0.34 +0.0 801,002 + Sama_0645 0.34 +0.4 801,002 + Sama_0645 0.34 -0.7 801,002 + Sama_0645 0.34 +0.8 801,002 + Sama_0645 0.34 +2.4 801,002 + Sama_0645 0.34 +0.0 801,003 - Sama_0645 0.34 -0.9 801,003 - Sama_0645 0.34 +4.9 801,005 + Sama_0645 0.35 +1.1 801,012 + Sama_0645 0.37 -1.5 801,103 + Sama_0645 0.61 -1.6 801,103 + Sama_0645 0.61 +0.7 801,103 + Sama_0645 0.61 -0.6 801,103 + Sama_0645 0.61 +2.7 801,104 - Sama_0645 0.61 -0.4 801,104 - Sama_0645 0.61 -2.0 801,121 + Sama_0645 0.66 -0.2 801,161 - Sama_0645 0.76 +1.2 801,200 + Sama_0645 0.87 -0.8 801,201 - Sama_0645 0.87 +0.6 801,233 + -2.8 801,295 + -0.5 801,295 + -0.7 801,307 + +1.1 801,308 - -2.5 801,369 + Sama_0646 0.12 -0.5 801,369 + Sama_0646 0.12 -0.3 801,477 + Sama_0646 0.29 +0.1 801,477 + Sama_0646 0.29 +2.0 801,478 - Sama_0646 0.29 -1.0 801,478 - Sama_0646 0.29 -0.1 801,478 - Sama_0646 0.29 -2.0 801,478 - Sama_0646 0.29 -2.9 801,520 + Sama_0646 0.36 -2.6 801,521 - Sama_0646 0.36 +0.5 801,521 - Sama_0646 0.36 +0.0 801,521 - Sama_0646 0.36 -0.4 801,614 - Sama_0646 0.51 -0.1 801,645 + Sama_0646 0.56 -0.0 801,645 + Sama_0646 0.56 -1.7 801,645 + Sama_0646 0.56 -0.9 801,645 + Sama_0646 0.56 +0.8 801,646 - Sama_0646 0.56 -0.7 801,646 - Sama_0646 0.56 +0.8 801,656 + Sama_0646 0.57 -0.9 801,656 + Sama_0646 0.57 -1.9 801,656 + Sama_0646 0.57 +0.9 801,657 - Sama_0646 0.58 +0.1 801,762 + Sama_0646 0.74 -1.0 801,762 + Sama_0646 0.74 +1.8 801,762 + Sama_0646 0.74 +2.9 801,762 + Sama_0646 0.74 -2.0 801,763 - Sama_0646 0.74 +0.9 801,763 - Sama_0646 0.74 -1.0 801,763 - Sama_0646 0.74 -1.5 801,763 - Sama_0646 0.74 -2.5 801,763 - Sama_0646 0.74 -1.2 801,763 - Sama_0646 0.74 +0.9 801,763 - Sama_0646 0.74 -1.5 801,763 - Sama_0646 0.74 -1.8 801,763 - Sama_0646 0.74 -0.2 801,763 - Sama_0646 0.74 -1.2 801,763 - Sama_0646 0.74 -1.2 801,764 + Sama_0646 0.75 +0.2 801,764 + Sama_0646 0.75 -1.0 801,764 + Sama_0646 0.75 +2.4 801,764 + Sama_0646 0.75 -1.1 801,764 + Sama_0646 0.75 -0.7 801,764 + Sama_0646 0.75 +0.5 801,764 + Sama_0646 0.75 +0.6 801,765 - Sama_0646 0.75 -1.9 801,765 - Sama_0646 0.75 +0.3 801,765 - Sama_0646 0.75 +0.9 801,765 - Sama_0646 0.75 +4.3 801,895 - +3.4 801,910 + -0.3 801,911 - +0.0 801,917 + +0.6 801,917 + +1.1 801,918 - -1.5 801,969 + +0.7 801,970 - -0.2 801,970 - +0.7 802,075 + -1.3 802,075 + -1.9 802,075 + -0.8 802,075 + -1.3 802,076 - -0.8 802,076 - -0.5 802,076 - -0.2 802,076 - -1.6 802,076 - +0.7 802,076 - -0.9 802,077 + +3.5 802,078 - -0.5 802,104 + Sama_0647 0.11 -2.9 802,104 + Sama_0647 0.11 +0.5 802,105 - Sama_0647 0.11 +2.2 802,113 + Sama_0647 0.12 -1.2 802,113 + Sama_0647 0.12 -0.2 802,113 + Sama_0647 0.12 +1.5 802,113 + Sama_0647 0.12 +0.4 802,114 - Sama_0647 0.12 -1.1 802,114 - Sama_0647 0.12 +0.5 802,114 - Sama_0647 0.12 +1.7 802,114 - Sama_0647 0.12 +0.7 802,114 - Sama_0647 0.12 -2.6 802,114 - Sama_0647 0.12 -1.1 802,123 - Sama_0647 0.12 +2.7 802,128 + Sama_0647 0.12 -0.5 802,128 + Sama_0647 0.12 -3.3 802,169 - Sama_0647 0.15 +1.1 802,177 + Sama_0647 0.15 +5.7 802,177 + Sama_0647 0.15 -0.9 802,177 + Sama_0647 0.15 -2.9 802,177 + Sama_0647 0.15 +2.4 802,177 + Sama_0647 0.15 +2.2 802,177 + Sama_0647 0.15 -0.5 802,177 + Sama_0647 0.15 +3.1 802,178 - Sama_0647 0.15 -0.3 802,178 - Sama_0647 0.15 +1.3 802,178 - Sama_0647 0.15 -0.4 802,178 - Sama_0647 0.15 +0.4 802,178 - Sama_0647 0.15 -1.1 802,178 - Sama_0647 0.15 -1.2 802,178 - Sama_0647 0.15 +2.7 802,178 - Sama_0647 0.15 -1.5 802,196 - Sama_0647 0.16 -0.5 802,204 + Sama_0647 0.17 +0.2
Or see this region's nucleotide sequence