Strain Fitness in Shewanella amazonensis SB2B around Sama_0336

Experiment: L-Histidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (N)
403,951	+		Sama_0335	0.43	-2.3
403,951	+		Sama_0335	0.43	-3.5
403,952	-		Sama_0335	0.43	-2.9
403,952	-		Sama_0335	0.43	-1.9
403,952	-		Sama_0335	0.43	-3.0
403,981	+		Sama_0335	0.45	-2.4
404,006	-		Sama_0335	0.47	-1.8
404,042	+		Sama_0335	0.49	-0.9
404,042	+		Sama_0335	0.49	-3.2
404,042	+		Sama_0335	0.49	-1.2
404,042	+		Sama_0335	0.49	-3.4
404,043	-		Sama_0335	0.49	-2.3
404,043	-		Sama_0335	0.49	-3.0
404,043	-		Sama_0335	0.49	-1.5
404,043	-		Sama_0335	0.49	-1.1
404,044	+		Sama_0335	0.49	-2.9
404,044	+		Sama_0335	0.49	-1.8
404,044	+		Sama_0335	0.49	-1.4
404,044	+		Sama_0335	0.49	-4.0
404,044	+		Sama_0335	0.49	-1.4
404,044	+		Sama_0335	0.49	-1.3
404,045	-		Sama_0335	0.49	-2.2
404,045	-		Sama_0335	0.49	-2.5
404,045	-		Sama_0335	0.49	-2.6
404,045	-		Sama_0335	0.49	-1.5
404,045	-		Sama_0335	0.49	-1.3
404,045	-		Sama_0335	0.49	-1.9
404,045	-		Sama_0335	0.49	-2.2
404,050	+		Sama_0335	0.50	-0.7
404,150	-		Sama_0335	0.56	-0.9
404,164	+		Sama_0335	0.57	-1.1
404,165	-		Sama_0335	0.57	-2.6
404,165	-		Sama_0335	0.57	-2.5
404,165	-		Sama_0335	0.57	-3.3
404,165	-		Sama_0335	0.57	-3.2
404,184	+		Sama_0335	0.58	-3.2
404,185	-		Sama_0335	0.58	-3.5
404,185	-		Sama_0335	0.58	-2.7
404,185	-		Sama_0335	0.58	-1.8
404,201	+		Sama_0335	0.59	-0.1
404,202	-		Sama_0335	0.59	-3.4
404,225	-		Sama_0335	0.61	+0.9
404,239	+		Sama_0335	0.62	-2.0
404,251	+		Sama_0335	0.62	-2.9
404,251	+		Sama_0335	0.62	-1.0
404,252	-		Sama_0335	0.63	-3.4
404,252	-		Sama_0335	0.63	-2.6
404,252	-		Sama_0335	0.63	-1.4
404,321	+		Sama_0335	0.67	+0.1
404,321	+		Sama_0335	0.67	-1.4
404,322	-		Sama_0335	0.67	-0.4
404,322	-		Sama_0335	0.67	-1.9
404,326	+		Sama_0335	0.67	-0.7
404,326	+		Sama_0335	0.67	-2.3
404,327	-		Sama_0335	0.67	-0.8
404,332	+		Sama_0335	0.68	-4.4
404,339	+		Sama_0335	0.68	-3.2
404,340	-		Sama_0335	0.68	-3.0
404,379	+		Sama_0335	0.71	-1.9
404,379	+		Sama_0335	0.71	-2.2
404,380	-		Sama_0335	0.71	-2.1
404,380	-		Sama_0335	0.71	-1.2
404,380	-		Sama_0335	0.71	-2.9
404,410	+		Sama_0335	0.73	-1.2
404,411	-		Sama_0335	0.73	-2.1
404,411	-		Sama_0335	0.73	-2.4
404,441	+		Sama_0335	0.75	-1.0
404,441	+		Sama_0335	0.75	-1.0
404,441	+		Sama_0335	0.75	-0.5
404,441	+		Sama_0335	0.75	-1.2
404,442	-		Sama_0335	0.75	-1.6
404,442	-		Sama_0335	0.75	-2.4
404,442	-		Sama_0335	0.75	-2.7
404,442	-		Sama_0335	0.75	-1.1
404,442	-		Sama_0335	0.75	-1.3
404,442	-		Sama_0335	0.75	+0.6
404,442	-		Sama_0335	0.75	-3.2
404,442	-		Sama_0335	0.75	-2.4
404,442	-		Sama_0335	0.75	-2.1
404,442	-		Sama_0335	0.75	-1.4
404,461	-		Sama_0335	0.76	-2.2
404,476	+		Sama_0335	0.77	+1.3
404,477	-		Sama_0335	0.77	-0.3
404,497	+		Sama_0335	0.78	+0.2
404,498	-		Sama_0335	0.78	-2.2
404,571	-		Sama_0335	0.83	-3.5
404,571	-		Sama_0335	0.83	-1.6
404,571	-		Sama_0335	0.83	-2.0
404,571	-		Sama_0335	0.83	-2.7
404,571	-		Sama_0335	0.83	-2.0
404,572	+		Sama_0335	0.83	-1.1
404,605	+		Sama_0335	0.85	-2.2
404,605	+		Sama_0335	0.85	-1.6
404,605	+		Sama_0335	0.85	-2.7
404,605	+		Sama_0335	0.85	-2.2
404,605	+		Sama_0335	0.85	-2.0
404,605	+		Sama_0335	0.85	-0.1
404,606	-		Sama_0335	0.85	-2.7
404,608	+		Sama_0335	0.85	-0.7
404,609	-		Sama_0335	0.85	-1.5
404,618	+		Sama_0335	0.86	-2.8
404,618	+		Sama_0335	0.86	-0.3
404,619	-		Sama_0335	0.86	-2.9
404,619	-		Sama_0335	0.86	-0.7
404,664	+		Sama_0335	0.89	-2.2
404,664	+		Sama_0335	0.89	-2.4
404,664	+		Sama_0335	0.89	-2.8
404,665	-		Sama_0335	0.89	-1.6
404,665	-		Sama_0335	0.89	-0.3
404,665	-		Sama_0335	0.89	-3.6
404,671	+		Sama_0335	0.89	-2.7
404,671	+		Sama_0335	0.89	-1.0
404,671	+		Sama_0335	0.89	-1.8
404,671	+		Sama_0335	0.89	-4.5
404,671	+		Sama_0335	0.89	-1.8
404,672	-		Sama_0335	0.89	+1.3
404,672	-		Sama_0335	0.89	-2.2
404,672	-		Sama_0335	0.89	-1.4
404,672	-		Sama_0335	0.89	-0.8
404,691	+				+0.1
404,692	+				-2.4
404,693	-				-1.9
404,724	+				-0.6
404,724	+				-3.1
404,724	+				-2.4
404,724	+				-4.3
404,725	-				-0.9
404,725	-				-1.8
404,725	-				-2.1
404,725	-				-2.2
404,792	+				-0.2
404,837	+				+2.4
404,838	-				-2.1
404,838	-				+0.6
404,851	+				-1.2
404,851	+				-0.9
404,852	-				-1.3
404,852	-				+0.1
404,852	-				+0.1
404,853	+				-1.0
404,853	+				-1.2
404,853	+				-0.5
404,854	-				-3.6
404,854	-				-0.7
404,867	+				-1.5
404,867	+				-0.4
404,867	+				+1.3
404,868	-				-3.6
404,868	-				-1.1
404,884	+				+1.4
404,885	-				-0.6
404,903	+				-2.9
404,904	-				-2.4
404,920	+				-2.5
404,920	+				-2.9
404,920	+				-0.9
404,921	-				-2.3
404,927	+				-2.0
404,928	-				-0.1
404,933	+				-2.4
404,934	-				-3.2
404,951	+				-3.0
404,951	+				-1.7
404,952	-				-3.1
404,952	-				-1.7
404,979	+				-1.3
404,979	+				-2.3
404,979	+				-2.9
404,979	+				+0.9
404,979	+				-0.8
404,979	+				-3.9
404,979	+				-1.9
404,979	+				-2.6
404,979	+				-1.5
404,979	+				-1.9
404,979	+				-2.1
404,980	-				-2.8
404,980	-				-0.4
404,980	-				+0.6
404,980	-				-0.9
404,980	-				-2.7
404,996	+				-1.7
404,996	+				-2.6
404,997	-				-2.6
404,997	-				-1.1
405,026	-		Sama_0336	0.10	-0.8
405,035	-		Sama_0336	0.11	-1.3
405,035	-		Sama_0336	0.11	-2.3
405,226	-		Sama_0336	0.28	-2.0
405,286	-		Sama_0336	0.34	-2.1
405,340	+		Sama_0336	0.39	-1.3
405,340	+		Sama_0336	0.39	-2.2
405,340	+		Sama_0336	0.39	-1.8
405,340	+		Sama_0336	0.39	-1.6
405,340	+		Sama_0336	0.39	-0.7
405,341	-		Sama_0336	0.39	-2.1
405,341	-		Sama_0336	0.39	-1.2
405,348	+		Sama_0336	0.40	-1.9
405,349	-		Sama_0336	0.40	-3.7
405,430	-		Sama_0336	0.47	-1.4
405,430	-		Sama_0336	0.47	-0.4
405,500	+		Sama_0336	0.54	-2.7
405,500	+		Sama_0336	0.54	-2.4
405,501	-		Sama_0336	0.54	-1.6
405,501	-		Sama_0336	0.54	+0.9
405,530	+		Sama_0336	0.56	-3.6
405,543	-		Sama_0336	0.57	-1.1
405,580	+		Sama_0336	0.61	-3.1
405,580	+		Sama_0336	0.61	-2.9
405,580	+		Sama_0336	0.61	-2.4
405,580	+		Sama_0336	0.61	-2.3
405,580	+		Sama_0336	0.61	+0.6
405,580	+		Sama_0336	0.61	-0.6
405,580	+		Sama_0336	0.61	-4.1
405,580	+		Sama_0336	0.61	-3.1
405,580	+		Sama_0336	0.61	-2.0
405,580	+		Sama_0336	0.61	-2.1
405,580	+		Sama_0336	0.61	-1.2
405,580	+		Sama_0336	0.61	-2.4
405,580	+		Sama_0336	0.61	-3.1
405,580	+		Sama_0336	0.61	-1.3
405,580	+		Sama_0336	0.61	-2.2
405,580	+		Sama_0336	0.61	-2.8
405,580	+		Sama_0336	0.61	-2.6
405,580	+		Sama_0336	0.61	-1.4
405,580	+		Sama_0336	0.61	-2.1
405,580	+		Sama_0336	0.61	-2.1
405,580	+		Sama_0336	0.61	-3.3
405,580	+		Sama_0336	0.61	+1.3
405,581	-		Sama_0336	0.61	-3.1
405,581	-		Sama_0336	0.61	-2.5
405,581	-		Sama_0336	0.61	-1.4
405,581	-		Sama_0336	0.61	-2.3
405,581	-		Sama_0336	0.61	-0.8
405,581	-		Sama_0336	0.61	-2.5
405,581	-		Sama_0336	0.61	-1.4
405,581	-		Sama_0336	0.61	-0.6
405,581	-		Sama_0336	0.61	-1.2
405,581	-		Sama_0336	0.61	-3.5
405,581	-		Sama_0336	0.61	-3.3
405,581	-		Sama_0336	0.61	-3.2
405,581	-		Sama_0336	0.61	-1.6
405,581	-		Sama_0336	0.61	-1.3
405,581	-		Sama_0336	0.61	-0.7
405,581	-		Sama_0336	0.61	-3.2
405,581	-		Sama_0336	0.61	-1.2
405,581	-		Sama_0336	0.61	-1.6
405,581	-		Sama_0336	0.61	-2.9
405,581	-		Sama_0336	0.61	-3.1
405,581	-		Sama_0336	0.61	-3.5
405,581	-		Sama_0336	0.61	-3.8
405,581	-		Sama_0336	0.61	-0.7
405,581	-		Sama_0336	0.61	-1.4
405,581	-		Sama_0336	0.61	-1.6
405,581	-		Sama_0336	0.61	-2.4
405,581	-		Sama_0336	0.61	-1.5
405,581	-		Sama_0336	0.61	-1.4
405,660	+		Sama_0336	0.68	-2.4
405,661	-		Sama_0336	0.68	-1.7
405,661	-		Sama_0336	0.68	-1.4
405,661	-		Sama_0336	0.68	+0.3
405,745	+		Sama_0336	0.76	-3.2
405,745	+		Sama_0336	0.76	-3.0
405,745	+		Sama_0336	0.76	-1.5
405,745	+		Sama_0336	0.76	-2.2
405,846	+		Sama_0336	0.85	-1.9
405,846	+		Sama_0336	0.85	-0.6
405,871	-		Sama_0336	0.87	-1.6
405,951	+				-2.4
405,951	+				-3.7
405,952	-				-2.5
405,952	-				-2.5
405,978	+				-1.7
406,006	+				-0.4
406,006	+				-1.4
406,006	+				-1.8
406,007	-				-1.6
406,007	-				-1.6
406,007	-				-5.1
406,023	+				+1.3
406,023	+				-2.2
406,023	+				-1.6
406,023	+				-2.1
406,023	+				-4.3
406,083	+				-2.8
406,083	+				-1.9
406,083	+				-2.8
406,083	+				-1.7
406,083	+				-1.8
406,083	+				-1.9
406,083	+				-2.8
406,083	+				-2.4
406,083	+				-2.5
406,084	-				-1.5
406,084	-				+0.1
406,084	-				-3.0
406,084	-				-2.2
406,084	-				-2.4
406,084	-				-2.7
406,084	-				-0.7
406,084	-				-0.7
406,084	-				-0.8
406,084	-				+0.7
406,084	-				-2.5
406,084	-				-3.8
406,084	-				+0.1
406,084	-				-2.4
406,084	-				-0.4
406,084	-				-2.5
406,084	-				-1.0
406,084	-				-1.0
406,084	-				-2.6
406,084	-				-0.9
406,087	+				-1.3
406,087	+				-2.6
406,087	+				-2.1
406,088	-				-2.5
406,088	-				+0.3
406,088	-				-1.5
406,088	-				-2.6
406,088	-				-1.7
406,088	-				-1.3
406,199	+		Sama_0337	0.14	-3.6
406,199	+		Sama_0337	0.14	-2.5
406,200	-		Sama_0337	0.14	-1.9
406,200	-		Sama_0337	0.14	-2.4
406,200	-		Sama_0337	0.14	-1.1
406,206	-		Sama_0337	0.14	-1.0
406,206	-		Sama_0337	0.14	-1.7
406,206	-		Sama_0337	0.14	-0.4
406,223	-		Sama_0337	0.15	-3.3
406,223	-		Sama_0337	0.15	-1.1
406,223	-		Sama_0337	0.15	+0.3
406,223	-		Sama_0337	0.15	+1.3
406,231	+		Sama_0337	0.16	-1.0
406,231	+		Sama_0337	0.16	-0.7
406,231	+		Sama_0337	0.16	-2.1
406,231	+		Sama_0337	0.16	-3.1
406,231	+		Sama_0337	0.16	-2.5
406,232	-		Sama_0337	0.16	-1.6
406,232	-		Sama_0337	0.16	-2.2
406,232	-		Sama_0337	0.16	-0.6
406,232	-		Sama_0337	0.16	-0.4
406,232	-		Sama_0337	0.16	-2.1
406,256	-		Sama_0337	0.18	-2.5
406,256	-		Sama_0337	0.18	-2.0
406,286	+		Sama_0337	0.20	-2.9
406,299	+		Sama_0337	0.21	-3.5
406,358	+		Sama_0337	0.25	-2.4
406,358	+		Sama_0337	0.25	-0.7
406,462	+		Sama_0337	0.32	-1.0
406,462	+		Sama_0337	0.32	-1.6
406,462	+		Sama_0337	0.32	-0.3
406,462	+		Sama_0337	0.32	-3.2
406,462	+		Sama_0337	0.32	-1.9
406,463	-		Sama_0337	0.32	-1.7
406,463	-		Sama_0337	0.32	-2.6
406,463	-		Sama_0337	0.32	-1.8
406,463	-		Sama_0337	0.32	-2.2
406,463	-		Sama_0337	0.32	-1.0
406,463	-		Sama_0337	0.32	-2.0
406,463	-		Sama_0337	0.32	-0.4
406,463	-		Sama_0337	0.32	-1.9
406,555	+		Sama_0337	0.39	-4.0
406,555	+		Sama_0337	0.39	-1.5
406,555	+		Sama_0337	0.39	+0.1
406,555	+		Sama_0337	0.39	-1.9
406,555	+		Sama_0337	0.39	-2.6
406,555	+		Sama_0337	0.39	-2.5
406,555	+		Sama_0337	0.39	-2.0
406,555	+		Sama_0337	0.39	-1.4
406,555	+		Sama_0337	0.39	-3.0
406,555	+		Sama_0337	0.39	-1.5
406,555	+		Sama_0337	0.39	-0.3
406,555	+		Sama_0337	0.39	-1.8
406,555	+		Sama_0337	0.39	-4.2
406,555	+		Sama_0337	0.39	-1.7
406,556	-		Sama_0337	0.39	-3.8
406,556	-		Sama_0337	0.39	-1.3
406,556	-		Sama_0337	0.39	-0.7
406,556	-		Sama_0337	0.39	-1.4
406,556	-		Sama_0337	0.39	-0.7
406,556	-		Sama_0337	0.39	-1.1
406,556	-		Sama_0337	0.39	-2.4
406,556	-		Sama_0337	0.39	-3.5
406,556	-		Sama_0337	0.39	-0.4
406,556	-		Sama_0337	0.39	-3.5
406,556	-		Sama_0337	0.39	-1.4
406,556	-		Sama_0337	0.39	+1.9
406,556	-		Sama_0337	0.39	-3.4
406,556	-		Sama_0337	0.39	-1.8
406,556	-		Sama_0337	0.39	+0.3
406,556	-		Sama_0337	0.39	-3.1
406,568	+		Sama_0337	0.40	-3.8
406,569	-		Sama_0337	0.40	-0.1
406,569	-		Sama_0337	0.40	-0.3
406,574	+		Sama_0337	0.40	-3.8
406,575	-		Sama_0337	0.40	-3.1
406,602	+		Sama_0337	0.42	-2.7
406,602	+		Sama_0337	0.42	-3.1
406,602	+		Sama_0337	0.42	-3.6
406,602	+		Sama_0337	0.42	-1.0
406,602	+		Sama_0337	0.42	-2.4
406,602	+		Sama_0337	0.42	-1.4
406,602	+		Sama_0337	0.42	-2.5
406,603	-		Sama_0337	0.42	-2.1
406,603	-		Sama_0337	0.42	-3.0
406,603	-		Sama_0337	0.42	-1.4
406,603	-		Sama_0337	0.42	-2.4
406,603	-		Sama_0337	0.42	-2.6
406,603	-		Sama_0337	0.42	-3.3
406,603	-		Sama_0337	0.42	-3.6
406,603	-		Sama_0337	0.42	-1.3
406,655	+		Sama_0337	0.46	-3.3
406,655	+		Sama_0337	0.46	-1.7
406,656	-		Sama_0337	0.46	-2.9
406,656	-		Sama_0337	0.46	-1.6
406,656	-		Sama_0337	0.46	-1.9
406,667	+		Sama_0337	0.47	-3.0
406,667	+		Sama_0337	0.47	-3.3
406,667	+		Sama_0337	0.47	-2.0
406,667	+		Sama_0337	0.47	-1.4
406,667	+		Sama_0337	0.47	-0.7
406,667	+		Sama_0337	0.47	-2.6
406,667	+		Sama_0337	0.47	-2.8
406,667	+		Sama_0337	0.47	-2.3
406,667	+		Sama_0337	0.47	-1.9
406,667	+		Sama_0337	0.47	-1.1
406,667	+		Sama_0337	0.47	-1.9
406,668	-		Sama_0337	0.47	-1.4
406,668	-		Sama_0337	0.47	-2.8
406,668	-		Sama_0337	0.47	-2.4
406,668	-		Sama_0337	0.47	-2.1
406,668	-		Sama_0337	0.47	-1.9
406,668	-		Sama_0337	0.47	-3.1
406,668	-		Sama_0337	0.47	-2.6
406,670	+		Sama_0337	0.47	-2.7
406,670	+		Sama_0337	0.47	-0.4
406,670	+		Sama_0337	0.47	-1.4
406,670	+		Sama_0337	0.47	-2.2
406,670	+		Sama_0337	0.47	-2.6
406,670	+		Sama_0337	0.47	-0.9
406,670	+		Sama_0337	0.47	-3.9
406,670	+		Sama_0337	0.47	-2.3
406,670	+		Sama_0337	0.47	-1.9
406,671	-		Sama_0337	0.47	-3.3
406,671	-		Sama_0337	0.47	-2.5
406,671	-		Sama_0337	0.47	-1.4
406,671	-		Sama_0337	0.47	-3.2
406,671	-		Sama_0337	0.47	-0.1
406,671	-		Sama_0337	0.47	-2.0
406,671	-		Sama_0337	0.47	-3.7
406,671	-		Sama_0337	0.47	-2.7
406,731	+		Sama_0337	0.51	-2.2
406,822	+		Sama_0337	0.58	-2.4
406,823	-		Sama_0337	0.58	-2.1
406,823	-		Sama_0337	0.58	-2.6
406,840	+		Sama_0337	0.59	-2.3
406,980	+		Sama_0337	0.69	-2.1
406,980	+		Sama_0337	0.69	-1.4
406,980	+		Sama_0337	0.69	-1.8
406,980	+		Sama_0337	0.69	-2.3
406,980	+		Sama_0337	0.69	-3.6
406,981	-		Sama_0337	0.69	-2.8
406,981	-		Sama_0337	0.69	-1.1
406,981	-		Sama_0337	0.69	-1.6
406,981	-		Sama_0337	0.69	-2.4
406,981	-		Sama_0337	0.69	-3.4