Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0326 and radC are separated by 83 nucleotides radC and rpmB are separated by 119 nucleotides rpmB and rpmG are separated by 6 nucleotides rpmG and Sama_0330 are separated by 280 nucleotides
Sama_0326: Sama_0326 - phosphopantothenoylcysteine decarboxylase., phosphopantothenate--cysteine ligase (RefSeq), at 393,131 to 394,384
_0326
Sama_0327: radC - DNA repair protein RadC (RefSeq), at 394,468 to 395,145
radC
Sama_0328: rpmB - 50S ribosomal protein L28 (RefSeq), at 395,265 to 395,501
rpmB
Sama_0329: rpmG - 50S ribosomal protein L33 (RefSeq), at 395,508 to 395,681
rpmG
Sama_0330: Sama_0330 - N-acetylglutamate synthase (RefSeq), at 395,962 to 397,284
_0330
Position (kb) 394
395
396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 394.364 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.384 kb on + strand at 394.384 kb on + strand at 394.384 kb on + strand at 394.384 kb on + strand at 394.385 kb on - strand at 394.442 kb on + strand at 394.442 kb on + strand at 394.443 kb on - strand at 394.514 kb on + strand at 394.514 kb on + strand at 394.538 kb on + strand, within radC at 394.538 kb on + strand, within radC at 394.538 kb on + strand, within radC at 394.539 kb on - strand, within radC at 394.553 kb on + strand, within radC at 394.554 kb on - strand, within radC at 394.618 kb on - strand, within radC at 394.637 kb on + strand, within radC at 394.637 kb on + strand, within radC at 394.638 kb on - strand, within radC at 394.646 kb on + strand, within radC at 394.646 kb on + strand, within radC at 394.647 kb on - strand, within radC at 394.647 kb on - strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.660 kb on - strand, within radC at 394.660 kb on - strand, within radC at 394.660 kb on - strand, within radC at 394.697 kb on + strand, within radC at 394.703 kb on - strand, within radC at 394.703 kb on - strand, within radC at 394.801 kb on + strand, within radC at 394.801 kb on + strand, within radC at 394.802 kb on - strand, within radC at 394.831 kb on + strand, within radC at 394.831 kb on + strand, within radC at 394.831 kb on + strand, within radC at 394.831 kb on + strand, within radC at 394.831 kb on + strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.838 kb on + strand, within radC at 394.838 kb on + strand, within radC at 394.838 kb on + strand, within radC at 394.838 kb on + strand, within radC at 394.839 kb on - strand, within radC at 394.839 kb on - strand, within radC at 394.839 kb on - strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.922 kb on + strand, within radC at 394.922 kb on + strand, within radC at 394.922 kb on + strand, within radC at 394.922 kb on + strand, within radC at 394.922 kb on + strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.925 kb on - strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.096 kb on + strand at 395.097 kb on - strand at 395.097 kb on - strand at 395.097 kb on - strand at 395.111 kb on + strand at 395.112 kb on - strand at 395.150 kb on + strand at 395.151 kb on - strand at 395.731 kb on + strand at 395.764 kb on + strand at 395.764 kb on + strand at 395.764 kb on + strand at 395.764 kb on + strand at 395.765 kb on - strand at 395.765 kb on - strand at 395.765 kb on - strand at 395.765 kb on - strand at 395.765 kb on - strand at 395.771 kb on + strand at 395.771 kb on + strand at 395.772 kb on - strand at 395.772 kb on - strand at 395.772 kb on - strand at 395.779 kb on + strand at 395.779 kb on + strand at 395.779 kb on + strand at 395.780 kb on - strand at 395.780 kb on - strand at 395.780 kb on - strand at 395.780 kb on - strand at 395.791 kb on - strand at 395.863 kb on + strand at 395.970 kb on + strand at 396.007 kb on + strand at 396.007 kb on + strand at 396.007 kb on + strand at 396.007 kb on + strand at 396.008 kb on - strand at 396.008 kb on - strand at 396.008 kb on - strand at 396.008 kb on - strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.127 kb on - strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.140 kb on - strand, within Sama_0330 at 396.140 kb on - strand, within Sama_0330
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 394,364 - -3.0 394,380 - +3.9 394,380 - +1.4 394,380 - -1.7 394,380 - +2.0 394,380 - -1.2 394,380 - -2.8 394,384 + +1.3 394,384 + +0.5 394,384 + +1.9 394,384 + +2.3 394,385 - -0.8 394,442 + +1.7 394,442 + +0.3 394,443 - -1.0 394,514 + +0.3 394,514 + -0.5 394,538 + radC Sama_0327 0.10 -1.6 394,538 + radC Sama_0327 0.10 -0.6 394,538 + radC Sama_0327 0.10 +1.1 394,539 - radC Sama_0327 0.10 -0.7 394,553 + radC Sama_0327 0.13 +1.1 394,554 - radC Sama_0327 0.13 -1.8 394,618 - radC Sama_0327 0.22 +3.4 394,637 + radC Sama_0327 0.25 -1.1 394,637 + radC Sama_0327 0.25 +2.2 394,638 - radC Sama_0327 0.25 +0.4 394,646 + radC Sama_0327 0.26 +1.0 394,646 + radC Sama_0327 0.26 +1.3 394,647 - radC Sama_0327 0.26 -1.7 394,647 - radC Sama_0327 0.26 -2.2 394,659 + radC Sama_0327 0.28 +0.3 394,659 + radC Sama_0327 0.28 +1.2 394,659 + radC Sama_0327 0.28 -1.0 394,659 + radC Sama_0327 0.28 -2.4 394,659 + radC Sama_0327 0.28 -1.0 394,659 + radC Sama_0327 0.28 +0.1 394,659 + radC Sama_0327 0.28 -0.3 394,659 + radC Sama_0327 0.28 +0.0 394,660 - radC Sama_0327 0.28 +3.1 394,660 - radC Sama_0327 0.28 -1.1 394,660 - radC Sama_0327 0.28 +2.7 394,697 + radC Sama_0327 0.34 +1.3 394,703 - radC Sama_0327 0.35 -0.9 394,703 - radC Sama_0327 0.35 +0.0 394,801 + radC Sama_0327 0.49 -1.4 394,801 + radC Sama_0327 0.49 +0.2 394,802 - radC Sama_0327 0.49 -0.5 394,831 + radC Sama_0327 0.54 +2.8 394,831 + radC Sama_0327 0.54 +3.4 394,831 + radC Sama_0327 0.54 +1.9 394,831 + radC Sama_0327 0.54 +1.1 394,831 + radC Sama_0327 0.54 -0.0 394,832 - radC Sama_0327 0.54 -0.8 394,832 - radC Sama_0327 0.54 +3.3 394,832 - radC Sama_0327 0.54 -1.8 394,832 - radC Sama_0327 0.54 +0.6 394,832 - radC Sama_0327 0.54 +0.9 394,832 - radC Sama_0327 0.54 +3.3 394,832 - radC Sama_0327 0.54 +3.6 394,832 - radC Sama_0327 0.54 -0.2 394,832 - radC Sama_0327 0.54 -0.5 394,838 + radC Sama_0327 0.55 +2.6 394,838 + radC Sama_0327 0.55 -1.8 394,838 + radC Sama_0327 0.55 -1.0 394,838 + radC Sama_0327 0.55 +1.3 394,839 - radC Sama_0327 0.55 +0.3 394,839 - radC Sama_0327 0.55 -0.2 394,839 - radC Sama_0327 0.55 -1.8 394,907 + radC Sama_0327 0.65 -1.9 394,907 + radC Sama_0327 0.65 +1.0 394,907 + radC Sama_0327 0.65 +0.5 394,907 + radC Sama_0327 0.65 -0.9 394,907 + radC Sama_0327 0.65 -2.1 394,907 + radC Sama_0327 0.65 +0.6 394,907 + radC Sama_0327 0.65 +2.2 394,907 + radC Sama_0327 0.65 -1.3 394,907 + radC Sama_0327 0.65 -0.0 394,907 + radC Sama_0327 0.65 -0.6 394,908 - radC Sama_0327 0.65 -1.1 394,908 - radC Sama_0327 0.65 +0.1 394,908 - radC Sama_0327 0.65 +1.8 394,908 - radC Sama_0327 0.65 -1.0 394,908 - radC Sama_0327 0.65 -0.6 394,908 - radC Sama_0327 0.65 -0.8 394,908 - radC Sama_0327 0.65 -2.4 394,908 - radC Sama_0327 0.65 -0.9 394,922 + radC Sama_0327 0.67 -0.7 394,922 + radC Sama_0327 0.67 -0.8 394,922 + radC Sama_0327 0.67 +1.3 394,922 + radC Sama_0327 0.67 -1.5 394,922 + radC Sama_0327 0.67 -1.9 394,923 - radC Sama_0327 0.67 -1.0 394,923 - radC Sama_0327 0.67 +1.5 394,923 - radC Sama_0327 0.67 +1.5 394,923 - radC Sama_0327 0.67 +2.4 394,923 - radC Sama_0327 0.67 -1.6 394,923 - radC Sama_0327 0.67 -0.8 394,923 - radC Sama_0327 0.67 -0.3 394,925 - radC Sama_0327 0.67 -0.3 395,066 + radC Sama_0327 0.88 +4.8 395,066 + radC Sama_0327 0.88 +3.6 395,066 + radC Sama_0327 0.88 +3.9 395,066 + radC Sama_0327 0.88 +0.1 395,066 + radC Sama_0327 0.88 +4.6 395,066 + radC Sama_0327 0.88 +4.1 395,066 + radC Sama_0327 0.88 +1.3 395,066 + radC Sama_0327 0.88 +0.5 395,066 + radC Sama_0327 0.88 +3.1 395,066 + radC Sama_0327 0.88 +1.2 395,066 + radC Sama_0327 0.88 +4.0 395,066 + radC Sama_0327 0.88 +1.3 395,066 + radC Sama_0327 0.88 +2.2 395,066 + radC Sama_0327 0.88 +4.0 395,066 + radC Sama_0327 0.88 +3.6 395,066 + radC Sama_0327 0.88 +4.1 395,066 + radC Sama_0327 0.88 -0.7 395,066 + radC Sama_0327 0.88 -0.4 395,067 - radC Sama_0327 0.88 +0.9 395,067 - radC Sama_0327 0.88 -1.5 395,067 - radC Sama_0327 0.88 +2.9 395,067 - radC Sama_0327 0.88 +3.2 395,067 - radC Sama_0327 0.88 +0.4 395,067 - radC Sama_0327 0.88 +1.6 395,067 - radC Sama_0327 0.88 -2.2 395,067 - radC Sama_0327 0.88 -1.4 395,067 - radC Sama_0327 0.88 +2.0 395,067 - radC Sama_0327 0.88 +2.0 395,072 + radC Sama_0327 0.89 +4.0 395,072 + radC Sama_0327 0.89 +4.9 395,072 + radC Sama_0327 0.89 +2.5 395,072 + radC Sama_0327 0.89 +4.5 395,072 + radC Sama_0327 0.89 +4.0 395,072 + radC Sama_0327 0.89 +1.7 395,072 + radC Sama_0327 0.89 +3.8 395,072 + radC Sama_0327 0.89 +3.2 395,072 + radC Sama_0327 0.89 +2.9 395,072 + radC Sama_0327 0.89 +4.2 395,072 + radC Sama_0327 0.89 -0.4 395,073 - radC Sama_0327 0.89 +0.2 395,073 - radC Sama_0327 0.89 -0.1 395,073 - radC Sama_0327 0.89 +3.0 395,073 - radC Sama_0327 0.89 +1.1 395,073 - radC Sama_0327 0.89 -0.5 395,073 - radC Sama_0327 0.89 +0.4 395,073 - radC Sama_0327 0.89 -0.5 395,073 - radC Sama_0327 0.89 +3.1 395,073 - radC Sama_0327 0.89 +2.3 395,073 - radC Sama_0327 0.89 -0.1 395,073 - radC Sama_0327 0.89 +0.4 395,073 - radC Sama_0327 0.89 +0.4 395,096 + +3.2 395,097 - -1.6 395,097 - -2.4 395,097 - +0.6 395,111 + +4.4 395,112 - -0.7 395,150 + +3.9 395,151 - +5.5 395,731 + +1.2 395,764 + -1.2 395,764 + +2.6 395,764 + -2.0 395,764 + -2.9 395,765 - +0.8 395,765 - -1.6 395,765 - +1.2 395,765 - -0.1 395,765 - +0.1 395,771 + -1.1 395,771 + -1.0 395,772 - -0.8 395,772 - +0.0 395,772 - +0.1 395,779 + -1.5 395,779 + +0.6 395,779 + +2.0 395,780 - -3.1 395,780 - -2.0 395,780 - +0.9 395,780 - -1.5 395,791 - -0.0 395,863 + +0.1 395,970 + -0.6 396,007 + -0.3 396,007 + -1.8 396,007 + -1.6 396,007 + -0.6 396,008 - -0.6 396,008 - -2.3 396,008 - -1.4 396,008 - -1.8 396,011 + -2.4 396,011 + -0.8 396,011 + +0.1 396,011 + -1.2 396,011 + -1.7 396,011 + -2.5 396,011 + -1.2 396,011 + -1.7 396,011 + -3.2 396,012 - -1.2 396,012 - -3.2 396,012 - -3.0 396,012 - -1.1 396,012 - -0.8 396,012 - +0.3 396,012 - -2.4 396,012 - -0.8 396,065 + -1.8 396,065 + -2.4 396,065 + -2.7 396,065 + -3.0 396,065 + -4.0 396,065 + -1.2 396,065 + -2.2 396,065 + -1.3 396,065 + -0.7 396,065 + -3.3 396,065 + -1.8 396,065 + -2.3 396,065 + -1.8 396,065 + -4.4 396,065 + -1.8 396,066 - -1.3 396,066 - -0.5 396,066 - -2.1 396,066 - -1.6 396,066 - -1.9 396,066 - -2.0 396,066 - -2.0 396,066 - -1.8 396,066 - -1.3 396,066 - -3.1 396,127 - Sama_0330 0.12 -2.3 396,139 + Sama_0330 0.13 -1.9 396,139 + Sama_0330 0.13 -1.5 396,139 + Sama_0330 0.13 -0.9 396,139 + Sama_0330 0.13 -3.0 396,139 + Sama_0330 0.13 -2.8 396,140 - Sama_0330 0.13 -1.9 396,140 - Sama_0330 0.13 -2.4
Or see this region's nucleotide sequence