Strain Fitness in Shewanella amazonensis SB2B around Sama_0260

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0259 and Sama_0260 are separated by 80 nucleotidesSama_0260 and Sama_0261 are separated by 62 nucleotides Sama_0259: Sama_0259 - argininosuccinate synthase (RefSeq), at 296,823 to 298,046 _0259 Sama_0260: Sama_0260 - argininosuccinate lyase (RefSeq), at 298,127 to 299,497 _0260 Sama_0261: Sama_0261 - AMP-dependent synthetase and ligase (RefSeq), at 299,560 to 301,215 _0261 Position (kb) 298 299 300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 297.137 kb on + strand, within Sama_0259at 297.137 kb on + strand, within Sama_0259at 297.138 kb on - strand, within Sama_0259at 297.138 kb on - strand, within Sama_0259at 297.138 kb on - strand, within Sama_0259at 297.157 kb on + strand, within Sama_0259at 297.157 kb on + strand, within Sama_0259at 297.158 kb on - strand, within Sama_0259at 297.158 kb on - strand, within Sama_0259at 297.158 kb on - strand, within Sama_0259at 297.324 kb on + strand, within Sama_0259at 297.325 kb on - strand, within Sama_0259at 297.325 kb on - strand, within Sama_0259at 297.325 kb on - strand, within Sama_0259at 297.373 kb on - strand, within Sama_0259at 297.454 kb on + strand, within Sama_0259at 297.454 kb on + strand, within Sama_0259at 297.454 kb on + strand, within Sama_0259at 297.455 kb on - strand, within Sama_0259at 297.455 kb on - strand, within Sama_0259at 297.455 kb on - strand, within Sama_0259at 297.501 kb on + strand, within Sama_0259at 297.501 kb on + strand, within Sama_0259at 297.501 kb on + strand, within Sama_0259at 297.501 kb on + strand, within Sama_0259at 297.502 kb on - strand, within Sama_0259at 297.502 kb on - strand, within Sama_0259at 297.502 kb on - strand, within Sama_0259at 297.502 kb on - strand, within Sama_0259at 297.564 kb on + strand, within Sama_0259at 297.584 kb on + strand, within Sama_0259at 297.626 kb on + strand, within Sama_0259at 297.627 kb on - strand, within Sama_0259at 297.786 kb on + strand, within Sama_0259at 297.786 kb on + strand, within Sama_0259at 297.786 kb on + strand, within Sama_0259at 297.787 kb on - strand, within Sama_0259at 297.868 kb on + strand, within Sama_0259at 297.869 kb on - strand, within Sama_0259at 297.869 kb on - strand, within Sama_0259at 297.876 kb on - strand, within Sama_0259at 297.876 kb on - strand, within Sama_0259at 297.882 kb on + strand, within Sama_0259at 297.882 kb on + strand, within Sama_0259at 297.882 kb on + strand, within Sama_0259at 297.882 kb on + strand, within Sama_0259at 297.882 kb on + strand, within Sama_0259at 297.883 kb on - strand, within Sama_0259at 297.883 kb on - strand, within Sama_0259at 297.883 kb on - strand, within Sama_0259at 297.883 kb on - strand, within Sama_0259at 297.883 kb on - strand, within Sama_0259at 297.883 kb on - strand, within Sama_0259at 297.884 kb on + strand, within Sama_0259at 297.885 kb on - strand, within Sama_0259at 297.930 kb on + strandat 297.930 kb on + strandat 297.930 kb on + strandat 297.969 kb on + strandat 297.969 kb on + strandat 297.969 kb on + strandat 297.970 kb on - strandat 298.032 kb on + strandat 298.032 kb on + strandat 298.032 kb on + strandat 298.044 kb on + strandat 298.091 kb on + strandat 298.092 kb on - strandat 298.126 kb on + strandat 298.126 kb on + strandat 298.127 kb on - strandat 298.205 kb on + strandat 298.427 kb on - strand, within Sama_0260at 298.482 kb on + strand, within Sama_0260at 298.482 kb on + strand, within Sama_0260at 298.482 kb on + strand, within Sama_0260at 298.483 kb on - strand, within Sama_0260at 298.483 kb on - strand, within Sama_0260at 298.483 kb on - strand, within Sama_0260at 298.483 kb on - strand, within Sama_0260at 298.483 kb on - strand, within Sama_0260at 298.522 kb on + strand, within Sama_0260at 298.522 kb on + strand, within Sama_0260at 298.523 kb on - strand, within Sama_0260at 298.523 kb on - strand, within Sama_0260at 298.587 kb on - strand, within Sama_0260at 298.640 kb on + strand, within Sama_0260at 298.640 kb on + strand, within Sama_0260at 298.640 kb on + strand, within Sama_0260at 298.640 kb on + strand, within Sama_0260at 298.640 kb on + strand, within Sama_0260at 298.641 kb on - strand, within Sama_0260at 298.641 kb on - strand, within Sama_0260at 298.641 kb on - strand, within Sama_0260at 298.641 kb on - strand, within Sama_0260at 298.641 kb on - strand, within Sama_0260at 298.641 kb on - strand, within Sama_0260at 298.739 kb on + strand, within Sama_0260at 298.739 kb on + strand, within Sama_0260at 298.739 kb on + strand, within Sama_0260at 298.739 kb on + strand, within Sama_0260at 298.739 kb on + strand, within Sama_0260at 298.739 kb on + strand, within Sama_0260at 298.739 kb on + strand, within Sama_0260at 298.739 kb on + strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.740 kb on - strand, within Sama_0260at 298.861 kb on + strand, within Sama_0260at 298.862 kb on - strand, within Sama_0260at 298.862 kb on - strand, within Sama_0260at 298.862 kb on - strand, within Sama_0260at 298.862 kb on - strand, within Sama_0260at 299.025 kb on - strand, within Sama_0260at 299.075 kb on + strand, within Sama_0260at 299.147 kb on - strand, within Sama_0260at 299.147 kb on - strand, within Sama_0260at 299.178 kb on + strand, within Sama_0260at 299.178 kb on + strand, within Sama_0260at 299.243 kb on + strand, within Sama_0260at 299.243 kb on + strand, within Sama_0260at 299.244 kb on - strand, within Sama_0260at 299.561 kb on + strandat 299.561 kb on + strandat 299.562 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.605 kb on + strandat 299.606 kb on - strandat 299.606 kb on - strandat 299.618 kb on + strandat 299.618 kb on + strandat 299.618 kb on + strandat 299.618 kb on + strandat 299.619 kb on - strandat 299.619 kb on - strandat 299.619 kb on - strandat 299.698 kb on + strandat 299.699 kb on - strandat 299.902 kb on - strand, within Sama_0261at 299.918 kb on + strand, within Sama_0261at 299.918 kb on + strand, within Sama_0261at 299.918 kb on + strand, within Sama_0261at 299.918 kb on + strand, within Sama_0261at 299.918 kb on + strand, within Sama_0261at 299.918 kb on + strand, within Sama_0261at 299.919 kb on - strand, within Sama_0261at 299.919 kb on - strand, within Sama_0261at 299.919 kb on - strand, within Sama_0261at 299.919 kb on - strand, within Sama_0261at 299.919 kb on - strand, within Sama_0261at 299.919 kb on - strand, within Sama_0261at 299.919 kb on - strand, within Sama_0261at 299.919 kb on - strand, within Sama_0261at 299.919 kb on - strand, within Sama_0261at 299.937 kb on + strand, within Sama_0261at 299.937 kb on + strand, within Sama_0261at 299.938 kb on - strand, within Sama_0261at 300.059 kb on + strand, within Sama_0261at 300.059 kb on + strand, within Sama_0261at 300.060 kb on - strand, within Sama_0261at 300.060 kb on - strand, within Sama_0261at 300.062 kb on + strand, within Sama_0261at 300.176 kb on + strand, within Sama_0261at 300.176 kb on + strand, within Sama_0261at 300.191 kb on + strand, within Sama_0261at 300.192 kb on - strand, within Sama_0261at 300.228 kb on + strand, within Sama_0261at 300.228 kb on + strand, within Sama_0261at 300.229 kb on - strand, within Sama_0261at 300.238 kb on + strand, within Sama_0261at 300.238 kb on + strand, within Sama_0261at 300.239 kb on - strand, within Sama_0261at 300.306 kb on + strand, within Sama_0261at 300.306 kb on + strand, within Sama_0261at 300.307 kb on - strand, within Sama_0261at 300.307 kb on - strand, within Sama_0261at 300.340 kb on + strand, within Sama_0261at 300.341 kb on - strand, within Sama_0261at 300.347 kb on + strand, within Sama_0261at 300.347 kb on + strand, within Sama_0261at 300.347 kb on + strand, within Sama_0261at 300.347 kb on + strand, within Sama_0261at 300.347 kb on + strand, within Sama_0261at 300.347 kb on + strand, within Sama_0261at 300.348 kb on - strand, within Sama_0261at 300.348 kb on - strand, within Sama_0261at 300.348 kb on - strand, within Sama_0261at 300.348 kb on - strand, within Sama_0261at 300.348 kb on - strand, within Sama_0261at 300.405 kb on + strand, within Sama_0261at 300.451 kb on + strand, within Sama_0261at 300.451 kb on + strand, within Sama_0261at 300.451 kb on + strand, within Sama_0261at 300.451 kb on + strand, within Sama_0261at 300.451 kb on + strand, within Sama_0261at 300.451 kb on + strand, within Sama_0261at 300.452 kb on - strand, within Sama_0261at 300.452 kb on - strand, within Sama_0261at 300.452 kb on - strand, within Sama_0261at 300.452 kb on - strand, within Sama_0261at 300.489 kb on + strand, within Sama_0261at 300.490 kb on - strand, within Sama_0261

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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297,137 + Sama_0259 0.26 -3.1
297,137 + Sama_0259 0.26 -2.6
297,138 - Sama_0259 0.26 -0.3
297,138 - Sama_0259 0.26 -2.7
297,138 - Sama_0259 0.26 +0.9
297,157 + Sama_0259 0.27 -0.7
297,157 + Sama_0259 0.27 -0.6
297,158 - Sama_0259 0.27 +1.9
297,158 - Sama_0259 0.27 -1.5
297,158 - Sama_0259 0.27 -2.4
297,324 + Sama_0259 0.41 -1.7
297,325 - Sama_0259 0.41 -3.8
297,325 - Sama_0259 0.41 -3.9
297,325 - Sama_0259 0.41 -2.4
297,373 - Sama_0259 0.45 -1.3
297,454 + Sama_0259 0.52 -2.0
297,454 + Sama_0259 0.52 -2.3
297,454 + Sama_0259 0.52 -0.6
297,455 - Sama_0259 0.52 -3.3
297,455 - Sama_0259 0.52 -2.0
297,455 - Sama_0259 0.52 -3.2
297,501 + Sama_0259 0.55 -2.9
297,501 + Sama_0259 0.55 -1.2
297,501 + Sama_0259 0.55 -1.7
297,501 + Sama_0259 0.55 -0.7
297,502 - Sama_0259 0.55 -3.1
297,502 - Sama_0259 0.55 -3.4
297,502 - Sama_0259 0.55 -2.6
297,502 - Sama_0259 0.55 -2.6
297,564 + Sama_0259 0.61 -1.4
297,584 + Sama_0259 0.62 -0.3
297,626 + Sama_0259 0.66 -0.9
297,627 - Sama_0259 0.66 -2.4
297,786 + Sama_0259 0.79 -1.3
297,786 + Sama_0259 0.79 -1.4
297,786 + Sama_0259 0.79 -0.5
297,787 - Sama_0259 0.79 -3.4
297,868 + Sama_0259 0.85 -1.0
297,869 - Sama_0259 0.85 -1.4
297,869 - Sama_0259 0.85 -2.9
297,876 - Sama_0259 0.86 -1.2
297,876 - Sama_0259 0.86 -1.5
297,882 + Sama_0259 0.87 -3.3
297,882 + Sama_0259 0.87 -1.6
297,882 + Sama_0259 0.87 -3.0
297,882 + Sama_0259 0.87 -2.9
297,882 + Sama_0259 0.87 -0.9
297,883 - Sama_0259 0.87 -3.7
297,883 - Sama_0259 0.87 -2.3
297,883 - Sama_0259 0.87 -1.5
297,883 - Sama_0259 0.87 -0.9
297,883 - Sama_0259 0.87 -2.1
297,883 - Sama_0259 0.87 -2.5
297,884 + Sama_0259 0.87 -2.2
297,885 - Sama_0259 0.87 -1.3
297,930 + +0.5
297,930 + -1.5
297,930 + +0.9
297,969 + -2.0
297,969 + -3.6
297,969 + -1.5
297,970 - -2.8
298,032 + -1.9
298,032 + -0.8
298,032 + -2.0
298,044 + -1.1
298,091 + +0.3
298,092 - -1.9
298,126 + -1.5
298,126 + -3.4
298,127 - -3.8
298,205 + -2.7
298,427 - Sama_0260 0.22 -2.4
298,482 + Sama_0260 0.26 -2.7
298,482 + Sama_0260 0.26 -2.4
298,482 + Sama_0260 0.26 -0.1
298,483 - Sama_0260 0.26 -1.0
298,483 - Sama_0260 0.26 -0.1
298,483 - Sama_0260 0.26 -2.6
298,483 - Sama_0260 0.26 -1.2
298,483 - Sama_0260 0.26 -1.5
298,522 + Sama_0260 0.29 -3.0
298,522 + Sama_0260 0.29 -1.9
298,523 - Sama_0260 0.29 -0.1
298,523 - Sama_0260 0.29 -3.2
298,587 - Sama_0260 0.34 -3.2
298,640 + Sama_0260 0.37 -3.9
298,640 + Sama_0260 0.37 -2.5
298,640 + Sama_0260 0.37 -2.4
298,640 + Sama_0260 0.37 -3.1
298,640 + Sama_0260 0.37 -2.5
298,641 - Sama_0260 0.37 -1.3
298,641 - Sama_0260 0.37 -2.5
298,641 - Sama_0260 0.37 -2.1
298,641 - Sama_0260 0.37 -1.0
298,641 - Sama_0260 0.37 -1.7
298,641 - Sama_0260 0.37 +0.5
298,739 + Sama_0260 0.45 -1.5
298,739 + Sama_0260 0.45 -1.8
298,739 + Sama_0260 0.45 -2.6
298,739 + Sama_0260 0.45 -1.3
298,739 + Sama_0260 0.45 -2.5
298,739 + Sama_0260 0.45 -3.4
298,739 + Sama_0260 0.45 -1.8
298,739 + Sama_0260 0.45 -2.4
298,740 - Sama_0260 0.45 -3.1
298,740 - Sama_0260 0.45 -2.3
298,740 - Sama_0260 0.45 -0.6
298,740 - Sama_0260 0.45 -0.9
298,740 - Sama_0260 0.45 -0.9
298,740 - Sama_0260 0.45 -3.5
298,740 - Sama_0260 0.45 -2.3
298,740 - Sama_0260 0.45 -1.5
298,740 - Sama_0260 0.45 -2.2
298,740 - Sama_0260 0.45 -3.6
298,861 + Sama_0260 0.54 -2.2
298,862 - Sama_0260 0.54 -0.6
298,862 - Sama_0260 0.54 -3.1
298,862 - Sama_0260 0.54 +0.5
298,862 - Sama_0260 0.54 -1.2
299,025 - Sama_0260 0.65 -2.9
299,075 + Sama_0260 0.69 -3.0
299,147 - Sama_0260 0.74 -0.7
299,147 - Sama_0260 0.74 -0.6
299,178 + Sama_0260 0.77 -1.3
299,178 + Sama_0260 0.77 -0.1
299,243 + Sama_0260 0.81 -1.9
299,243 + Sama_0260 0.81 -0.8
299,244 - Sama_0260 0.81 -0.6
299,561 + -1.5
299,561 + -0.0
299,562 + +1.9
299,605 + -2.0
299,605 + -2.3
299,605 + -2.4
299,605 + +0.2
299,605 + -1.2
299,605 + -0.8
299,605 + -1.3
299,605 + -2.0
299,605 + -0.9
299,605 + +1.0
299,605 + -2.5
299,606 - +0.6
299,606 - -0.4
299,618 + +2.7
299,618 + -2.2
299,618 + -2.1
299,618 + -0.8
299,619 - +0.9
299,619 - -2.7
299,619 - +1.3
299,698 + +2.0
299,699 - +1.0
299,902 - Sama_0261 0.21 -0.6
299,918 + Sama_0261 0.22 +3.2
299,918 + Sama_0261 0.22 -1.3
299,918 + Sama_0261 0.22 -1.0
299,918 + Sama_0261 0.22 +0.8
299,918 + Sama_0261 0.22 +2.7
299,918 + Sama_0261 0.22 +0.7
299,919 - Sama_0261 0.22 -0.9
299,919 - Sama_0261 0.22 -1.8
299,919 - Sama_0261 0.22 -0.6
299,919 - Sama_0261 0.22 +0.2
299,919 - Sama_0261 0.22 -0.7
299,919 - Sama_0261 0.22 -0.7
299,919 - Sama_0261 0.22 -2.0
299,919 - Sama_0261 0.22 +0.5
299,919 - Sama_0261 0.22 -0.8
299,937 + Sama_0261 0.23 +1.2
299,937 + Sama_0261 0.23 -0.8
299,938 - Sama_0261 0.23 -0.8
300,059 + Sama_0261 0.30 -1.1
300,059 + Sama_0261 0.30 +0.8
300,060 - Sama_0261 0.30 -3.3
300,060 - Sama_0261 0.30 +0.9
300,062 + Sama_0261 0.30 +1.1
300,176 + Sama_0261 0.37 -0.3
300,176 + Sama_0261 0.37 -0.5
300,191 + Sama_0261 0.38 -2.2
300,192 - Sama_0261 0.38 -2.8
300,228 + Sama_0261 0.40 +0.1
300,228 + Sama_0261 0.40 -0.7
300,229 - Sama_0261 0.40 +1.2
300,238 + Sama_0261 0.41 +1.1
300,238 + Sama_0261 0.41 +0.3
300,239 - Sama_0261 0.41 +0.6
300,306 + Sama_0261 0.45 +0.9
300,306 + Sama_0261 0.45 +1.7
300,307 - Sama_0261 0.45 -1.1
300,307 - Sama_0261 0.45 +0.9
300,340 + Sama_0261 0.47 +0.4
300,341 - Sama_0261 0.47 -0.2
300,347 + Sama_0261 0.48 -1.6
300,347 + Sama_0261 0.48 -1.5
300,347 + Sama_0261 0.48 +0.2
300,347 + Sama_0261 0.48 +1.6
300,347 + Sama_0261 0.48 +0.9
300,347 + Sama_0261 0.48 +0.3
300,348 - Sama_0261 0.48 +2.8
300,348 - Sama_0261 0.48 +1.0
300,348 - Sama_0261 0.48 -0.4
300,348 - Sama_0261 0.48 +0.7
300,348 - Sama_0261 0.48 -0.1
300,405 + Sama_0261 0.51 +2.4
300,451 + Sama_0261 0.54 -1.5
300,451 + Sama_0261 0.54 -2.0
300,451 + Sama_0261 0.54 +1.5
300,451 + Sama_0261 0.54 +1.9
300,451 + Sama_0261 0.54 -0.7
300,451 + Sama_0261 0.54 +0.3
300,452 - Sama_0261 0.54 +0.4
300,452 - Sama_0261 0.54 -0.9
300,452 - Sama_0261 0.54 -1.1
300,452 - Sama_0261 0.54 +0.5
300,489 + Sama_0261 0.56 -0.0
300,490 - Sama_0261 0.56 -1.9

Or see this region's nucleotide sequence