Strain Fitness in Shewanella oneidensis MR-1 around SO2270

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthscA and SO2269 are separated by 8 nucleotidesSO2269 and rimK-2 are separated by 155 nucleotidesrimK-2 and SO2271 are separated by 70 nucleotidesSO2271 and SO2272 are separated by 76 nucleotides SO2268: hscA - chaperone protein HscA (NCBI ptt file), at 2,381,532 to 2,383,394 hscA SO2269: SO2269 - ferredoxin, 2Fe-2S (NCBI ptt file), at 2,383,403 to 2,383,738 SO2269 SO2270: rimK-2 - ribosomal protein S6 modification protein (NCBI ptt file), at 2,383,894 to 2,384,793 rimK-2 SO2271: SO2271 - conserved hypothetical protein (NCBI ptt file), at 2,384,864 to 2,385,061 SO2271 SO2272: SO2272 - ISSod4, transposase (NCBI ptt file), at 2,385,138 to 2,386,340 SO2272 Position (kb) 2383 2384 2385Strain fitness (log2 ratio) -1 0 1at 2383.844 kb on - strandat 2384.129 kb on + strand, within rimK-2at 2384.283 kb on - strand, within rimK-2at 2384.329 kb on + strand, within rimK-2at 2384.342 kb on - strand, within rimK-2at 2384.499 kb on + strand, within rimK-2at 2384.692 kb on - strand, within rimK-2at 2384.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,383,844 - -0.1
2,384,129 + rimK-2 SO2270 0.26 -0.7
2,384,283 - rimK-2 SO2270 0.43 -1.7
2,384,329 + rimK-2 SO2270 0.48 -0.4
2,384,342 - rimK-2 SO2270 0.50 -0.1
2,384,499 + rimK-2 SO2270 0.67 -0.8
2,384,692 - rimK-2 SO2270 0.89 -0.4
2,384,868 + -1.0

Or see this region's nucleotide sequence