Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hscA and SO2269 are separated by 8 nucleotides SO2269 and rimK-2 are separated by 155 nucleotides rimK-2 and SO2271 are separated by 70 nucleotides SO2271 and SO2272 are separated by 76 nucleotides
SO2268: hscA - chaperone protein HscA (NCBI ptt file), at 2,381,532 to 2,383,394
hscA
SO2269: SO2269 - ferredoxin, 2Fe-2S (NCBI ptt file), at 2,383,403 to 2,383,738
SO2269
SO2270: rimK-2 - ribosomal protein S6 modification protein (NCBI ptt file), at 2,383,894 to 2,384,793
rimK-2
SO2271: SO2271 - conserved hypothetical protein (NCBI ptt file), at 2,384,864 to 2,385,061
SO2271
SO2272: SO2272 - ISSod4, transposase (NCBI ptt file), at 2,385,138 to 2,386,340
SO2272
Position (kb)
2383
2384
2385 Strain fitness (log2 ratio)
-1
0
1 at 2383.844 kb on - strand at 2384.129 kb on + strand, within rimK-2 at 2384.283 kb on - strand, within rimK-2 at 2384.329 kb on + strand, within rimK-2 at 2384.342 kb on - strand, within rimK-2 at 2384.499 kb on + strand, within rimK-2 at 2384.692 kb on - strand, within rimK-2 at 2384.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 2,383,844 - -0.1 2,384,129 + rimK-2 SO2270 0.26 -0.7 2,384,283 - rimK-2 SO2270 0.43 -1.7 2,384,329 + rimK-2 SO2270 0.48 -0.4 2,384,342 - rimK-2 SO2270 0.50 -0.1 2,384,499 + rimK-2 SO2270 0.67 -0.8 2,384,692 - rimK-2 SO2270 0.89 -0.4 2,384,868 + -1.0
Or see this region's nucleotide sequence