Strain Fitness in Shewanella oneidensis MR-1 around SO0319

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0317 and SO0318 are separated by 31 nucleotidesSO0318 and SO0319 are separated by 235 nucleotidesSO0319 and SO0320 are separated by 31 nucleotides SO0317: SO0317 - transcriptional regulator, AraC/XylS family (NCBI ptt file), at 323,850 to 324,608 SO0317 SO0318: SO0318 - conserved hypothetical protein (NCBI ptt file), at 324,640 to 324,990 SO0318 SO0319: SO0319 - conserved domain protein (NCBI ptt file), at 325,226 to 326,563 SO0319 SO0320: SO0320 - conserved domain protein (NCBI ptt file), at 326,595 to 327,602 SO0320 Position (kb) 325 326 327Strain fitness (log2 ratio) -2 -1 0 1at 324.266 kb on - strand, within SO0317at 324.286 kb on + strand, within SO0317at 324.286 kb on + strand, within SO0317at 324.391 kb on + strand, within SO0317at 324.399 kb on - strand, within SO0317at 324.403 kb on + strand, within SO0317at 324.404 kb on - strand, within SO0317at 324.430 kb on + strand, within SO0317at 324.438 kb on - strand, within SO0317at 324.438 kb on - strand, within SO0317at 324.455 kb on + strand, within SO0317at 324.469 kb on + strand, within SO0317at 324.470 kb on - strand, within SO0317at 324.476 kb on - strand, within SO0317at 324.518 kb on + strand, within SO0317at 324.518 kb on + strand, within SO0317at 324.518 kb on + strand, within SO0317at 324.526 kb on - strand, within SO0317at 324.526 kb on - strand, within SO0317at 324.526 kb on - strand, within SO0317at 324.603 kb on - strandat 324.706 kb on + strand, within SO0318at 324.773 kb on + strand, within SO0318at 324.809 kb on - strand, within SO0318at 324.865 kb on + strand, within SO0318at 324.894 kb on - strand, within SO0318at 324.894 kb on - strand, within SO0318at 324.894 kb on - strand, within SO0318at 324.899 kb on - strand, within SO0318at 324.903 kb on + strand, within SO0318at 324.944 kb on + strand, within SO0318at 324.949 kb on + strand, within SO0318at 325.059 kb on - strandat 325.105 kb on - strandat 325.110 kb on + strandat 325.141 kb on + strandat 325.198 kb on - strandat 325.200 kb on + strandat 325.208 kb on - strandat 325.221 kb on + strandat 325.263 kb on + strandat 325.308 kb on - strandat 325.332 kb on + strandat 325.410 kb on - strand, within SO0319at 325.420 kb on - strand, within SO0319at 325.420 kb on - strand, within SO0319at 325.420 kb on - strand, within SO0319at 325.422 kb on + strand, within SO0319at 325.434 kb on + strand, within SO0319at 325.442 kb on - strand, within SO0319at 325.646 kb on + strand, within SO0319at 325.646 kb on + strand, within SO0319at 325.659 kb on - strand, within SO0319at 325.754 kb on - strand, within SO0319at 325.829 kb on + strand, within SO0319at 325.847 kb on - strand, within SO0319at 325.904 kb on - strand, within SO0319at 325.916 kb on + strand, within SO0319at 325.981 kb on - strand, within SO0319at 326.004 kb on - strand, within SO0319at 326.027 kb on - strand, within SO0319at 326.061 kb on - strand, within SO0319at 326.131 kb on + strand, within SO0319at 326.194 kb on + strand, within SO0319at 326.202 kb on - strand, within SO0319at 326.243 kb on - strand, within SO0319at 326.298 kb on - strand, within SO0319at 326.314 kb on + strand, within SO0319at 326.331 kb on + strand, within SO0319at 326.331 kb on + strand, within SO0319at 326.334 kb on - strand, within SO0319at 326.446 kb on - strandat 326.465 kb on + strandat 326.465 kb on + strandat 326.465 kb on + strandat 326.473 kb on - strandat 326.473 kb on - strandat 326.533 kb on + strandat 326.540 kb on + strandat 326.541 kb on - strandat 326.645 kb on - strandat 326.647 kb on - strandat 326.823 kb on + strand, within SO0320at 326.823 kb on + strand, within SO0320at 326.846 kb on - strand, within SO0320at 326.846 kb on - strand, within SO0320at 326.848 kb on + strand, within SO0320at 326.870 kb on + strand, within SO0320at 326.883 kb on - strand, within SO0320at 326.918 kb on + strand, within SO0320at 326.935 kb on + strand, within SO0320at 326.935 kb on + strand, within SO0320at 327.042 kb on - strand, within SO0320at 327.053 kb on + strand, within SO0320at 327.079 kb on + strand, within SO0320at 327.082 kb on - strand, within SO0320at 327.087 kb on - strand, within SO0320at 327.088 kb on + strand, within SO0320at 327.106 kb on - strand, within SO0320at 327.109 kb on - strand, within SO0320at 327.109 kb on - strand, within SO0320at 327.221 kb on + strand, within SO0320at 327.221 kb on + strand, within SO0320at 327.226 kb on + strand, within SO0320at 327.226 kb on + strand, within SO0320at 327.226 kb on + strand, within SO0320at 327.229 kb on - strand, within SO0320at 327.229 kb on - strand, within SO0320at 327.229 kb on - strand, within SO0320at 327.229 kb on - strand, within SO0320at 327.231 kb on + strand, within SO0320at 327.361 kb on + strand, within SO0320at 327.431 kb on + strand, within SO0320at 327.431 kb on + strand, within SO0320at 327.431 kb on + strand, within SO0320at 327.431 kb on + strand, within SO0320at 327.439 kb on - strand, within SO0320at 327.439 kb on - strand, within SO0320at 327.439 kb on - strand, within SO0320at 327.483 kb on - strand, within SO0320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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324,266 - SO0317 0.55 +0.0
324,286 + SO0317 0.57 -0.3
324,286 + SO0317 0.57 +0.0
324,391 + SO0317 0.71 +0.4
324,399 - SO0317 0.72 +0.0
324,403 + SO0317 0.73 -0.9
324,404 - SO0317 0.73 +0.2
324,430 + SO0317 0.76 -0.4
324,438 - SO0317 0.77 +0.5
324,438 - SO0317 0.77 -0.0
324,455 + SO0317 0.80 +0.4
324,469 + SO0317 0.82 +0.8
324,470 - SO0317 0.82 -0.5
324,476 - SO0317 0.82 -0.0
324,518 + SO0317 0.88 -0.2
324,518 + SO0317 0.88 -0.2
324,518 + SO0317 0.88 +0.6
324,526 - SO0317 0.89 +0.5
324,526 - SO0317 0.89 +0.1
324,526 - SO0317 0.89 -0.0
324,603 - +0.1
324,706 + SO0318 0.19 -0.3
324,773 + SO0318 0.38 -0.5
324,809 - SO0318 0.48 -0.9
324,865 + SO0318 0.64 -0.0
324,894 - SO0318 0.72 +0.1
324,894 - SO0318 0.72 -0.6
324,894 - SO0318 0.72 +0.2
324,899 - SO0318 0.74 -0.7
324,903 + SO0318 0.75 +0.1
324,944 + SO0318 0.87 -0.2
324,949 + SO0318 0.88 -0.0
325,059 - +0.9
325,105 - -0.8
325,110 + -0.1
325,141 + +0.1
325,198 - -0.4
325,200 + +0.6
325,208 - -0.7
325,221 + -0.1
325,263 + +0.4
325,308 - -0.2
325,332 + +0.0
325,410 - SO0319 0.14 +0.3
325,420 - SO0319 0.14 -0.3
325,420 - SO0319 0.14 +0.4
325,420 - SO0319 0.14 -0.9
325,422 + SO0319 0.15 +0.2
325,434 + SO0319 0.16 +0.5
325,442 - SO0319 0.16 -0.5
325,646 + SO0319 0.31 +1.1
325,646 + SO0319 0.31 -0.9
325,659 - SO0319 0.32 -0.2
325,754 - SO0319 0.39 -0.5
325,829 + SO0319 0.45 +0.5
325,847 - SO0319 0.46 -0.0
325,904 - SO0319 0.51 -0.1
325,916 + SO0319 0.52 +0.1
325,981 - SO0319 0.56 -0.1
326,004 - SO0319 0.58 +0.1
326,027 - SO0319 0.60 -0.0
326,061 - SO0319 0.62 -0.4
326,131 + SO0319 0.68 -0.2
326,194 + SO0319 0.72 +0.7
326,202 - SO0319 0.73 -0.8
326,243 - SO0319 0.76 +0.6
326,298 - SO0319 0.80 -0.1
326,314 + SO0319 0.81 -0.5
326,331 + SO0319 0.83 -0.1
326,331 + SO0319 0.83 +0.0
326,334 - SO0319 0.83 -0.8
326,446 - +0.4
326,465 + +0.0
326,465 + -0.4
326,465 + +0.3
326,473 - -0.1
326,473 - +0.5
326,533 + +1.4
326,540 + +0.2
326,541 - +0.8
326,645 - -0.1
326,647 - -0.5
326,823 + SO0320 0.23 -2.4
326,823 + SO0320 0.23 +1.1
326,846 - SO0320 0.25 -0.1
326,846 - SO0320 0.25 +0.7
326,848 + SO0320 0.25 +0.6
326,870 + SO0320 0.27 +0.9
326,883 - SO0320 0.29 +1.5
326,918 + SO0320 0.32 +0.5
326,935 + SO0320 0.34 +0.1
326,935 + SO0320 0.34 -0.3
327,042 - SO0320 0.44 +0.7
327,053 + SO0320 0.45 +0.4
327,079 + SO0320 0.48 +0.5
327,082 - SO0320 0.48 -0.3
327,087 - SO0320 0.49 -0.2
327,088 + SO0320 0.49 +0.7
327,106 - SO0320 0.51 +0.9
327,109 - SO0320 0.51 +1.1
327,109 - SO0320 0.51 +0.4
327,221 + SO0320 0.62 +0.7
327,221 + SO0320 0.62 +0.1
327,226 + SO0320 0.63 +0.4
327,226 + SO0320 0.63 -0.1
327,226 + SO0320 0.63 +1.3
327,229 - SO0320 0.63 +0.2
327,229 - SO0320 0.63 +0.0
327,229 - SO0320 0.63 -0.1
327,229 - SO0320 0.63 +1.2
327,231 + SO0320 0.63 +0.5
327,361 + SO0320 0.76 +0.3
327,431 + SO0320 0.83 +0.8
327,431 + SO0320 0.83 +1.1
327,431 + SO0320 0.83 -0.9
327,431 + SO0320 0.83 +0.4
327,439 - SO0320 0.84 -1.0
327,439 - SO0320 0.84 +0.7
327,439 - SO0320 0.84 -0.1
327,483 - SO0320 0.88 -0.0

Or see this region's nucleotide sequence