Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09290

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09270 and PGA1_c09280 are separated by 132 nucleotidesPGA1_c09280 and PGA1_c09290 are separated by 104 nucleotidesPGA1_c09290 and PGA1_c09300 are separated by 176 nucleotidesPGA1_c09300 and PGA1_c09310 are separated by 101 nucleotides PGA1_c09270: PGA1_c09270 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA, at 949,314 to 950,036 _c09270 PGA1_c09280: PGA1_c09280 - Uncharacterized protein conserved in bacteria, at 950,169 to 950,555 _c09280 PGA1_c09290: PGA1_c09290 - WGR domain., at 950,660 to 950,911 _c09290 PGA1_c09300: PGA1_c09300 - Peroxiredoxin, at 951,088 to 951,624 _c09300 PGA1_c09310: PGA1_c09310 - transcription regulator, AraC family, at 951,726 to 952,457 _c09310 Position (kb) 950 951Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 950.117 kb on + strandat 950.195 kb on - strandat 950.213 kb on - strand, within PGA1_c09280at 950.214 kb on + strand, within PGA1_c09280at 950.222 kb on - strand, within PGA1_c09280at 950.227 kb on - strand, within PGA1_c09280at 950.277 kb on - strand, within PGA1_c09280at 950.294 kb on + strand, within PGA1_c09280at 950.297 kb on + strand, within PGA1_c09280at 950.310 kb on - strand, within PGA1_c09280at 950.343 kb on + strand, within PGA1_c09280at 950.421 kb on + strand, within PGA1_c09280at 950.426 kb on + strand, within PGA1_c09280at 950.435 kb on - strand, within PGA1_c09280at 950.444 kb on - strand, within PGA1_c09280at 950.464 kb on + strand, within PGA1_c09280at 950.465 kb on + strand, within PGA1_c09280at 950.514 kb on + strand, within PGA1_c09280at 950.522 kb on - strandat 950.532 kb on - strandat 950.532 kb on - strandat 950.601 kb on + strandat 950.606 kb on + strandat 950.658 kb on + strandat 950.666 kb on - strandat 950.666 kb on - strandat 950.666 kb on - strandat 950.781 kb on + strand, within PGA1_c09290at 950.802 kb on + strand, within PGA1_c09290at 950.802 kb on + strand, within PGA1_c09290at 950.810 kb on - strand, within PGA1_c09290at 950.812 kb on + strand, within PGA1_c09290at 950.859 kb on + strand, within PGA1_c09290at 950.859 kb on + strand, within PGA1_c09290at 950.903 kb on + strandat 950.903 kb on + strandat 950.903 kb on + strandat 950.903 kb on + strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.954 kb on + strandat 950.954 kb on + strandat 950.954 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.969 kb on + strandat 951.032 kb on - strandat 951.094 kb on - strandat 951.190 kb on + strand, within PGA1_c09300at 951.190 kb on + strand, within PGA1_c09300at 951.193 kb on - strand, within PGA1_c09300at 951.195 kb on + strand, within PGA1_c09300at 951.198 kb on - strand, within PGA1_c09300at 951.198 kb on - strand, within PGA1_c09300at 951.198 kb on - strand, within PGA1_c09300at 951.203 kb on + strand, within PGA1_c09300at 951.203 kb on - strand, within PGA1_c09300at 951.203 kb on - strand, within PGA1_c09300at 951.219 kb on + strand, within PGA1_c09300at 951.230 kb on + strand, within PGA1_c09300at 951.230 kb on + strand, within PGA1_c09300at 951.238 kb on - strand, within PGA1_c09300at 951.267 kb on + strand, within PGA1_c09300at 951.275 kb on - strand, within PGA1_c09300at 951.320 kb on - strand, within PGA1_c09300at 951.350 kb on - strand, within PGA1_c09300at 951.350 kb on - strand, within PGA1_c09300at 951.350 kb on - strand, within PGA1_c09300at 951.368 kb on + strand, within PGA1_c09300at 951.371 kb on - strand, within PGA1_c09300at 951.394 kb on + strand, within PGA1_c09300at 951.402 kb on - strand, within PGA1_c09300at 951.527 kb on + strand, within PGA1_c09300at 951.540 kb on - strand, within PGA1_c09300at 951.556 kb on - strand, within PGA1_c09300at 951.589 kb on + strandat 951.589 kb on + strandat 951.589 kb on + strandat 951.594 kb on + strandat 951.597 kb on - strandat 951.597 kb on - strandat 951.628 kb on - strandat 951.632 kb on + strandat 951.679 kb on + strandat 951.739 kb on - strandat 951.742 kb on + strandat 951.747 kb on - strandat 951.783 kb on - strandat 951.797 kb on + strandat 951.797 kb on + strandat 951.839 kb on - strand, within PGA1_c09310at 951.842 kb on + strand, within PGA1_c09310at 951.882 kb on + strand, within PGA1_c09310at 951.895 kb on - strand, within PGA1_c09310at 951.895 kb on - strand, within PGA1_c09310at 951.910 kb on + strand, within PGA1_c09310

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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950,117 + +0.0
950,195 - -0.7
950,213 - PGA1_c09280 0.11 -0.1
950,214 + PGA1_c09280 0.12 -1.1
950,222 - PGA1_c09280 0.14 +0.1
950,227 - PGA1_c09280 0.15 +0.9
950,277 - PGA1_c09280 0.28 +0.9
950,294 + PGA1_c09280 0.32 -0.2
950,297 + PGA1_c09280 0.33 -0.5
950,310 - PGA1_c09280 0.36 +1.8
950,343 + PGA1_c09280 0.45 -1.2
950,421 + PGA1_c09280 0.65 -0.3
950,426 + PGA1_c09280 0.66 -0.3
950,435 - PGA1_c09280 0.69 -0.5
950,444 - PGA1_c09280 0.71 +1.5
950,464 + PGA1_c09280 0.76 -0.1
950,465 + PGA1_c09280 0.76 +1.4
950,514 + PGA1_c09280 0.89 -2.4
950,522 - +0.2
950,532 - +0.3
950,532 - -0.5
950,601 + -2.2
950,606 + +0.0
950,658 + +1.0
950,666 - +0.1
950,666 - -1.9
950,666 - -0.2
950,781 + PGA1_c09290 0.48 +1.0
950,802 + PGA1_c09290 0.56 +0.5
950,802 + PGA1_c09290 0.56 +2.9
950,810 - PGA1_c09290 0.60 +0.3
950,812 + PGA1_c09290 0.60 +1.6
950,859 + PGA1_c09290 0.79 +0.3
950,859 + PGA1_c09290 0.79 +0.7
950,903 + -0.1
950,903 + +1.3
950,903 + +0.0
950,903 + +1.1
950,911 - +0.0
950,911 - +0.3
950,911 - -1.7
950,911 - +1.9
950,954 + +0.5
950,954 + +0.7
950,954 - +0.2
950,962 - +0.1
950,962 - -2.3
950,962 - -0.1
950,962 - +0.5
950,962 - +1.8
950,969 + -0.5
951,032 - +0.0
951,094 - -0.5
951,190 + PGA1_c09300 0.19 +1.0
951,190 + PGA1_c09300 0.19 -2.2
951,193 - PGA1_c09300 0.20 -0.1
951,195 + PGA1_c09300 0.20 -0.1
951,198 - PGA1_c09300 0.20 +0.8
951,198 - PGA1_c09300 0.20 -2.1
951,198 - PGA1_c09300 0.20 -0.4
951,203 + PGA1_c09300 0.21 +0.4
951,203 - PGA1_c09300 0.21 -0.8
951,203 - PGA1_c09300 0.21 +1.5
951,219 + PGA1_c09300 0.24 +0.5
951,230 + PGA1_c09300 0.26 +1.5
951,230 + PGA1_c09300 0.26 +0.1
951,238 - PGA1_c09300 0.28 -0.6
951,267 + PGA1_c09300 0.33 +0.3
951,275 - PGA1_c09300 0.35 -0.3
951,320 - PGA1_c09300 0.43 -0.1
951,350 - PGA1_c09300 0.49 +0.6
951,350 - PGA1_c09300 0.49 -1.1
951,350 - PGA1_c09300 0.49 -1.2
951,368 + PGA1_c09300 0.52 -1.2
951,371 - PGA1_c09300 0.53 -0.2
951,394 + PGA1_c09300 0.57 +1.7
951,402 - PGA1_c09300 0.58 +1.0
951,527 + PGA1_c09300 0.82 +0.2
951,540 - PGA1_c09300 0.84 -2.5
951,556 - PGA1_c09300 0.87 -0.9
951,589 + -0.3
951,589 + +0.3
951,589 + -0.7
951,594 + +0.6
951,597 - -0.3
951,597 - +0.8
951,628 - +0.0
951,632 + -1.6
951,679 + +0.4
951,739 - -0.6
951,742 + +0.7
951,747 - -0.6
951,783 - +0.4
951,797 + -1.2
951,797 + +0.6
951,839 - PGA1_c09310 0.15 +0.1
951,842 + PGA1_c09310 0.16 +0.5
951,882 + PGA1_c09310 0.21 -0.1
951,895 - PGA1_c09310 0.23 +0.1
951,895 - PGA1_c09310 0.23 -3.1
951,910 + PGA1_c09310 0.25 +0.1

Or see this region's nucleotide sequence