Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08690

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08680 and PGA1_c08690 are separated by 234 nucleotidesPGA1_c08690 and PGA1_c08700 are separated by 74 nucleotidesPGA1_c08700 and PGA1_c08710 are separated by 3 nucleotides PGA1_c08680: PGA1_c08680 - pirin-like protein, at 895,115 to 896,026 _c08680 PGA1_c08690: PGA1_c08690 - hypothetical protein, at 896,261 to 896,776 _c08690 PGA1_c08700: PGA1_c08700 - hypothetical protein, at 896,851 to 897,450 _c08700 PGA1_c08710: PGA1_c08710 - TadE-like protein., at 897,454 to 898,014 _c08710 Position (kb) 896 897Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 895.266 kb on - strand, within PGA1_c08680at 895.358 kb on + strand, within PGA1_c08680at 895.359 kb on + strand, within PGA1_c08680at 895.370 kb on - strand, within PGA1_c08680at 895.567 kb on + strand, within PGA1_c08680at 895.571 kb on + strand, within PGA1_c08680at 895.619 kb on - strand, within PGA1_c08680at 895.662 kb on + strand, within PGA1_c08680at 895.669 kb on + strand, within PGA1_c08680at 895.670 kb on - strand, within PGA1_c08680at 895.670 kb on - strand, within PGA1_c08680at 895.682 kb on + strand, within PGA1_c08680at 895.748 kb on - strand, within PGA1_c08680at 895.798 kb on + strand, within PGA1_c08680at 895.801 kb on + strand, within PGA1_c08680at 895.809 kb on - strand, within PGA1_c08680at 895.814 kb on - strand, within PGA1_c08680at 896.034 kb on - strandat 896.053 kb on - strandat 896.144 kb on + strandat 896.152 kb on - strandat 896.171 kb on + strandat 896.179 kb on - strandat 896.201 kb on - strandat 896.211 kb on - strandat 896.213 kb on + strandat 896.213 kb on + strandat 896.213 kb on + strandat 896.226 kb on + strandat 896.258 kb on - strandat 896.279 kb on - strandat 896.279 kb on - strandat 896.319 kb on - strand, within PGA1_c08690at 896.382 kb on + strand, within PGA1_c08690at 896.395 kb on - strand, within PGA1_c08690at 896.518 kb on - strand, within PGA1_c08690at 896.620 kb on + strand, within PGA1_c08690at 896.622 kb on + strand, within PGA1_c08690at 896.626 kb on - strand, within PGA1_c08690at 896.628 kb on - strand, within PGA1_c08690at 896.715 kb on - strand, within PGA1_c08690at 896.749 kb on + strandat 896.749 kb on + strandat 896.749 kb on + strandat 896.757 kb on - strandat 896.757 kb on - strandat 896.770 kb on + strandat 896.814 kb on - strandat 896.848 kb on + strandat 896.848 kb on + strandat 896.856 kb on - strandat 896.856 kb on - strandat 896.856 kb on - strandat 896.856 kb on - strandat 896.882 kb on - strandat 896.891 kb on + strandat 896.891 kb on + strandat 896.959 kb on + strand, within PGA1_c08700at 896.981 kb on - strand, within PGA1_c08700at 896.986 kb on - strand, within PGA1_c08700at 897.064 kb on - strand, within PGA1_c08700at 897.066 kb on + strand, within PGA1_c08700at 897.094 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.128 kb on - strand, within PGA1_c08700at 897.152 kb on - strand, within PGA1_c08700at 897.246 kb on + strand, within PGA1_c08700at 897.246 kb on + strand, within PGA1_c08700at 897.270 kb on + strand, within PGA1_c08700at 897.278 kb on - strand, within PGA1_c08700at 897.280 kb on + strand, within PGA1_c08700at 897.280 kb on + strand, within PGA1_c08700at 897.394 kb on - strandat 897.419 kb on + strandat 897.427 kb on - strandat 897.475 kb on + strandat 897.631 kb on - strand, within PGA1_c08710at 897.640 kb on - strand, within PGA1_c08710at 897.641 kb on - strand, within PGA1_c08710at 897.660 kb on - strand, within PGA1_c08710at 897.694 kb on - strand, within PGA1_c08710at 897.694 kb on - strand, within PGA1_c08710at 897.733 kb on + strand, within PGA1_c08710at 897.741 kb on - strand, within PGA1_c08710at 897.741 kb on - strand, within PGA1_c08710

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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895,266 - PGA1_c08680 0.17 -1.2
895,358 + PGA1_c08680 0.27 -0.5
895,359 + PGA1_c08680 0.27 +0.5
895,370 - PGA1_c08680 0.28 -0.5
895,567 + PGA1_c08680 0.50 +0.7
895,571 + PGA1_c08680 0.50 -0.1
895,619 - PGA1_c08680 0.55 -0.2
895,662 + PGA1_c08680 0.60 +1.2
895,669 + PGA1_c08680 0.61 +1.1
895,670 - PGA1_c08680 0.61 +0.5
895,670 - PGA1_c08680 0.61 +0.3
895,682 + PGA1_c08680 0.62 -0.4
895,748 - PGA1_c08680 0.69 -0.4
895,798 + PGA1_c08680 0.75 -0.4
895,801 + PGA1_c08680 0.75 -1.6
895,809 - PGA1_c08680 0.76 -1.1
895,814 - PGA1_c08680 0.77 +0.0
896,034 - +0.5
896,053 - -0.1
896,144 + -0.5
896,152 - +0.5
896,171 + +0.9
896,179 - -2.4
896,201 - -1.9
896,211 - -1.9
896,213 + -1.1
896,213 + +0.0
896,213 + +0.7
896,226 + +1.2
896,258 - +0.1
896,279 - -2.1
896,279 - +0.1
896,319 - PGA1_c08690 0.11 -3.1
896,382 + PGA1_c08690 0.23 -1.0
896,395 - PGA1_c08690 0.26 -1.1
896,518 - PGA1_c08690 0.50 -3.1
896,620 + PGA1_c08690 0.70 +0.5
896,622 + PGA1_c08690 0.70 +0.1
896,626 - PGA1_c08690 0.71 -0.9
896,628 - PGA1_c08690 0.71 -1.0
896,715 - PGA1_c08690 0.88 +1.2
896,749 + -0.1
896,749 + +0.7
896,749 + -0.4
896,757 - +0.2
896,757 - -0.1
896,770 + -0.5
896,814 - -2.0
896,848 + +0.6
896,848 + +0.0
896,856 - +1.0
896,856 - +0.9
896,856 - -0.2
896,856 - +0.9
896,882 - +1.4
896,891 + +0.5
896,891 + +1.2
896,959 + PGA1_c08700 0.18 +0.1
896,981 - PGA1_c08700 0.22 -0.9
896,986 - PGA1_c08700 0.23 -0.4
897,064 - PGA1_c08700 0.35 +0.1
897,066 + PGA1_c08700 0.36 +1.0
897,094 + PGA1_c08700 0.41 +2.2
897,111 + PGA1_c08700 0.43 +1.4
897,111 + PGA1_c08700 0.43 -1.3
897,111 + PGA1_c08700 0.43 +0.4
897,111 + PGA1_c08700 0.43 +0.2
897,111 + PGA1_c08700 0.43 +1.8
897,119 - PGA1_c08700 0.45 -2.6
897,119 - PGA1_c08700 0.45 -0.4
897,119 - PGA1_c08700 0.45 +0.5
897,119 - PGA1_c08700 0.45 -0.2
897,119 - PGA1_c08700 0.45 -0.5
897,119 - PGA1_c08700 0.45 -2.0
897,119 - PGA1_c08700 0.45 +1.6
897,128 - PGA1_c08700 0.46 -0.3
897,152 - PGA1_c08700 0.50 -0.1
897,246 + PGA1_c08700 0.66 -1.8
897,246 + PGA1_c08700 0.66 -0.9
897,270 + PGA1_c08700 0.70 +0.7
897,278 - PGA1_c08700 0.71 +0.2
897,280 + PGA1_c08700 0.71 +0.2
897,280 + PGA1_c08700 0.71 -0.2
897,394 - +0.5
897,419 + -2.3
897,427 - -1.8
897,475 + +0.5
897,631 - PGA1_c08710 0.32 -1.7
897,640 - PGA1_c08710 0.33 +0.1
897,641 - PGA1_c08710 0.33 +0.3
897,660 - PGA1_c08710 0.37 -1.2
897,694 - PGA1_c08710 0.43 -0.4
897,694 - PGA1_c08710 0.43 +0.8
897,733 + PGA1_c08710 0.50 +0.9
897,741 - PGA1_c08710 0.51 -1.0
897,741 - PGA1_c08710 0.51 -0.4

Or see this region's nucleotide sequence