Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08200 and PGA1_c08210 are separated by 154 nucleotides PGA1_c08210 and PGA1_c08220 are separated by 2 nucleotides PGA1_c08220 and PGA1_c08230 are separated by 39 nucleotides PGA1_c08230 and PGA1_c08240 are separated by 296 nucleotides
PGA1_c08200: PGA1_c08200 - cob(I)yrinic acid a,c-diamide adenosyltransferase CobO, at 850,002 to 850,637
_c08200
PGA1_c08210: PGA1_c08210 - Predicted enzyme related to lactoylglutathione lyase, at 850,792 to 851,199
_c08210
PGA1_c08220: PGA1_c08220 - Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily., at 851,202 to 851,579
_c08220
PGA1_c08230: PGA1_c08230 - Predicted transcriptional regulators, at 851,619 to 852,164
_c08230
PGA1_c08240: PGA1_c08240 - aerobic glycerol-3-phosphate dehydrogenase GlpD, at 852,461 to 854,050
_c08240
Position (kb) 851
852 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 850.631 kb on + strand at 850.631 kb on + strand at 850.631 kb on + strand at 850.639 kb on - strand at 850.639 kb on - strand at 850.639 kb on - strand at 850.639 kb on - strand at 850.718 kb on + strand at 850.718 kb on + strand at 850.718 kb on + strand at 850.718 kb on + strand at 850.731 kb on + strand at 850.815 kb on + strand at 850.818 kb on - strand at 850.827 kb on - strand at 850.847 kb on - strand, within PGA1_c08210 at 850.857 kb on - strand, within PGA1_c08210 at 850.857 kb on - strand, within PGA1_c08210 at 850.904 kb on + strand, within PGA1_c08210 at 850.930 kb on - strand, within PGA1_c08210 at 850.960 kb on + strand, within PGA1_c08210 at 850.969 kb on - strand, within PGA1_c08210 at 851.018 kb on - strand, within PGA1_c08210 at 851.031 kb on + strand, within PGA1_c08210 at 851.034 kb on - strand, within PGA1_c08210 at 851.036 kb on + strand, within PGA1_c08210 at 851.036 kb on + strand, within PGA1_c08210 at 851.036 kb on + strand, within PGA1_c08210 at 851.036 kb on + strand, within PGA1_c08210 at 851.036 kb on + strand, within PGA1_c08210 at 851.039 kb on - strand, within PGA1_c08210 at 851.039 kb on - strand, within PGA1_c08210 at 851.039 kb on - strand, within PGA1_c08210 at 851.039 kb on - strand, within PGA1_c08210 at 851.057 kb on + strand, within PGA1_c08210 at 851.065 kb on - strand, within PGA1_c08210 at 851.085 kb on - strand, within PGA1_c08210 at 851.183 kb on + strand at 851.183 kb on + strand at 851.183 kb on + strand at 851.191 kb on - strand at 851.191 kb on - strand at 851.191 kb on - strand at 851.194 kb on + strand at 851.214 kb on + strand at 851.269 kb on + strand, within PGA1_c08220 at 851.274 kb on + strand, within PGA1_c08220 at 851.274 kb on + strand, within PGA1_c08220 at 851.282 kb on - strand, within PGA1_c08220 at 851.289 kb on - strand, within PGA1_c08220 at 851.324 kb on + strand, within PGA1_c08220 at 851.332 kb on - strand, within PGA1_c08220 at 851.371 kb on + strand, within PGA1_c08220 at 851.400 kb on - strand, within PGA1_c08220 at 851.444 kb on + strand, within PGA1_c08220 at 851.505 kb on - strand, within PGA1_c08220 at 851.505 kb on - strand, within PGA1_c08220 at 851.508 kb on + strand, within PGA1_c08220 at 851.515 kb on - strand, within PGA1_c08220 at 851.645 kb on + strand at 851.647 kb on + strand at 851.647 kb on + strand at 851.678 kb on - strand, within PGA1_c08230 at 851.699 kb on - strand, within PGA1_c08230 at 851.743 kb on - strand, within PGA1_c08230 at 851.766 kb on - strand, within PGA1_c08230 at 851.906 kb on + strand, within PGA1_c08230 at 851.935 kb on - strand, within PGA1_c08230 at 852.003 kb on - strand, within PGA1_c08230 at 852.043 kb on + strand, within PGA1_c08230 at 852.061 kb on + strand, within PGA1_c08230 at 852.110 kb on - strand at 852.112 kb on + strand at 852.112 kb on + strand at 852.112 kb on + strand at 852.113 kb on - strand at 852.113 kb on - strand at 852.120 kb on - strand at 852.120 kb on - strand at 852.120 kb on - strand at 852.120 kb on - strand at 852.135 kb on - strand at 852.160 kb on + strand at 852.190 kb on + strand at 852.251 kb on - strand at 852.368 kb on + strand at 852.385 kb on + strand at 852.443 kb on - strand at 852.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 850,631 + -1.1 850,631 + +0.6 850,631 + -1.4 850,639 - +0.9 850,639 - -0.4 850,639 - +0.4 850,639 - -0.1 850,718 + -1.4 850,718 + -0.8 850,718 + +1.2 850,718 + +0.8 850,731 + -1.2 850,815 + -2.9 850,818 - +1.2 850,827 - -1.6 850,847 - PGA1_c08210 0.13 +0.8 850,857 - PGA1_c08210 0.16 +0.2 850,857 - PGA1_c08210 0.16 +0.2 850,904 + PGA1_c08210 0.27 +2.2 850,930 - PGA1_c08210 0.34 -2.4 850,960 + PGA1_c08210 0.41 -2.5 850,969 - PGA1_c08210 0.43 +0.0 851,018 - PGA1_c08210 0.55 -0.8 851,031 + PGA1_c08210 0.59 -0.4 851,034 - PGA1_c08210 0.59 +0.2 851,036 + PGA1_c08210 0.60 +0.2 851,036 + PGA1_c08210 0.60 +0.4 851,036 + PGA1_c08210 0.60 +0.2 851,036 + PGA1_c08210 0.60 -0.6 851,036 + PGA1_c08210 0.60 +0.4 851,039 - PGA1_c08210 0.61 -0.8 851,039 - PGA1_c08210 0.61 -0.8 851,039 - PGA1_c08210 0.61 +1.8 851,039 - PGA1_c08210 0.61 +0.3 851,057 + PGA1_c08210 0.65 +1.2 851,065 - PGA1_c08210 0.67 +0.2 851,085 - PGA1_c08210 0.72 +1.5 851,183 + +0.5 851,183 + -1.8 851,183 + +0.9 851,191 - +0.2 851,191 - -1.1 851,191 - +1.2 851,194 + -1.0 851,214 + -0.8 851,269 + PGA1_c08220 0.18 +1.2 851,274 + PGA1_c08220 0.19 -1.1 851,274 + PGA1_c08220 0.19 +0.2 851,282 - PGA1_c08220 0.21 -2.1 851,289 - PGA1_c08220 0.23 -0.1 851,324 + PGA1_c08220 0.32 -1.1 851,332 - PGA1_c08220 0.34 -1.6 851,371 + PGA1_c08220 0.45 -0.0 851,400 - PGA1_c08220 0.52 -1.9 851,444 + PGA1_c08220 0.64 -1.2 851,505 - PGA1_c08220 0.80 -1.4 851,505 - PGA1_c08220 0.80 +0.4 851,508 + PGA1_c08220 0.81 -1.4 851,515 - PGA1_c08220 0.83 -0.8 851,645 + +0.5 851,647 + +1.2 851,647 + -0.6 851,678 - PGA1_c08230 0.11 -1.4 851,699 - PGA1_c08230 0.15 +0.5 851,743 - PGA1_c08230 0.23 -1.5 851,766 - PGA1_c08230 0.27 -0.2 851,906 + PGA1_c08230 0.53 -1.4 851,935 - PGA1_c08230 0.58 +1.2 852,003 - PGA1_c08230 0.70 -0.1 852,043 + PGA1_c08230 0.78 +0.2 852,061 + PGA1_c08230 0.81 -1.4 852,110 - -0.4 852,112 + -1.9 852,112 + -1.8 852,112 + +0.9 852,113 - -0.1 852,113 - -1.8 852,120 - +0.2 852,120 - -0.4 852,120 - -0.6 852,120 - +1.8 852,135 - -2.9 852,160 + -0.5 852,190 + +0.6 852,251 - -3.0 852,368 + -2.2 852,385 + -1.3 852,443 - -0.7 852,475 - +0.6
Or see this region's nucleotide sequence