Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05660 and PGA1_c05670 overlap by 4 nucleotides PGA1_c05670 and PGA1_c05680 overlap by 4 nucleotides PGA1_c05680 and PGA1_c05690 are separated by 106 nucleotides PGA1_c05690 and PGA1_c05700 are separated by 135 nucleotides
PGA1_c05660: PGA1_c05660 - Predicted ATPase, at 578,317 to 579,732
_c05660
PGA1_c05670: PGA1_c05670 - acetyltransferase domain-containing protein, at 579,729 to 580,283
_c05670
PGA1_c05680: PGA1_c05680 - Predicted membrane protein, at 580,280 to 581,335
_c05680
PGA1_c05690: PGA1_c05690 - Truncated hemoglobins, at 581,442 to 581,852
_c05690
PGA1_c05700: PGA1_c05700 - KAP family P-loop domain., at 581,988 to 583,832
_c05700
Position (kb) 580
581
582 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 579.323 kb on - strand, within PGA1_c05660 at 579.419 kb on + strand, within PGA1_c05660 at 579.490 kb on - strand, within PGA1_c05660 at 579.495 kb on - strand, within PGA1_c05660 at 579.511 kb on + strand, within PGA1_c05660 at 579.511 kb on + strand, within PGA1_c05660 at 579.511 kb on + strand, within PGA1_c05660 at 579.519 kb on - strand, within PGA1_c05660 at 579.553 kb on + strand, within PGA1_c05660 at 579.629 kb on - strand at 579.649 kb on + strand at 579.649 kb on + strand at 579.657 kb on - strand at 579.657 kb on - strand at 579.679 kb on + strand at 579.679 kb on + strand at 579.687 kb on - strand at 579.688 kb on + strand at 579.733 kb on - strand at 579.735 kb on + strand at 579.744 kb on - strand at 579.777 kb on - strand at 579.842 kb on + strand, within PGA1_c05670 at 579.852 kb on + strand, within PGA1_c05670 at 579.898 kb on + strand, within PGA1_c05670 at 579.901 kb on - strand, within PGA1_c05670 at 580.046 kb on + strand, within PGA1_c05670 at 580.054 kb on - strand, within PGA1_c05670 at 580.054 kb on - strand, within PGA1_c05670 at 580.100 kb on - strand, within PGA1_c05670 at 580.112 kb on + strand, within PGA1_c05670 at 580.112 kb on + strand, within PGA1_c05670 at 580.137 kb on + strand, within PGA1_c05670 at 580.145 kb on - strand, within PGA1_c05670 at 580.239 kb on - strand at 580.239 kb on - strand at 580.284 kb on + strand at 580.370 kb on + strand at 580.429 kb on + strand, within PGA1_c05680 at 580.494 kb on - strand, within PGA1_c05680 at 580.574 kb on + strand, within PGA1_c05680 at 580.800 kb on + strand, within PGA1_c05680 at 580.815 kb on + strand, within PGA1_c05680 at 580.823 kb on - strand, within PGA1_c05680 at 580.976 kb on + strand, within PGA1_c05680 at 581.053 kb on + strand, within PGA1_c05680 at 581.066 kb on - strand, within PGA1_c05680 at 581.089 kb on - strand, within PGA1_c05680 at 581.131 kb on + strand, within PGA1_c05680 at 581.149 kb on - strand, within PGA1_c05680 at 581.151 kb on + strand, within PGA1_c05680 at 581.156 kb on + strand, within PGA1_c05680 at 581.169 kb on - strand, within PGA1_c05680 at 581.189 kb on + strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.197 kb on - strand, within PGA1_c05680 at 581.267 kb on - strand at 581.267 kb on - strand at 581.276 kb on + strand at 581.276 kb on + strand at 581.276 kb on + strand at 581.283 kb on + strand at 581.284 kb on - strand at 581.284 kb on - strand at 581.366 kb on + strand at 581.440 kb on + strand at 581.448 kb on - strand at 581.502 kb on + strand, within PGA1_c05690 at 581.502 kb on - strand, within PGA1_c05690 at 581.530 kb on + strand, within PGA1_c05690 at 581.538 kb on - strand, within PGA1_c05690 at 581.538 kb on - strand, within PGA1_c05690 at 581.538 kb on - strand, within PGA1_c05690 at 581.641 kb on - strand, within PGA1_c05690 at 581.719 kb on + strand, within PGA1_c05690 at 581.719 kb on + strand, within PGA1_c05690 at 581.749 kb on + strand, within PGA1_c05690 at 581.749 kb on + strand, within PGA1_c05690 at 581.770 kb on - strand, within PGA1_c05690 at 581.782 kb on - strand, within PGA1_c05690 at 581.810 kb on + strand, within PGA1_c05690 at 581.818 kb on - strand at 581.823 kb on - strand at 581.823 kb on - strand at 581.841 kb on + strand at 581.841 kb on + strand at 581.841 kb on + strand at 581.841 kb on + strand at 581.848 kb on - strand at 581.849 kb on - strand at 581.849 kb on - strand at 581.864 kb on - strand at 581.883 kb on - strand at 581.888 kb on - strand at 581.923 kb on - strand at 581.923 kb on - strand at 581.923 kb on - strand at 581.923 kb on - strand at 581.931 kb on - strand at 581.954 kb on + strand at 581.954 kb on + strand at 581.954 kb on + strand at 581.954 kb on + strand at 581.959 kb on + strand at 581.962 kb on - strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.966 kb on + strand at 581.968 kb on + strand at 581.972 kb on + strand at 581.974 kb on - strand at 581.974 kb on - strand at 581.981 kb on - strand at 582.006 kb on - strand at 582.006 kb on - strand at 582.008 kb on + strand at 582.016 kb on - strand at 582.077 kb on + strand at 582.082 kb on + strand at 582.082 kb on + strand at 582.085 kb on - strand at 582.085 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.090 kb on - strand at 582.095 kb on + strand at 582.100 kb on - strand at 582.159 kb on + strand at 582.167 kb on - strand at 582.171 kb on - strand at 582.171 kb on - strand at 582.173 kb on + strand, within PGA1_c05700 at 582.192 kb on + strand, within PGA1_c05700 at 582.217 kb on + strand, within PGA1_c05700 at 582.247 kb on - strand, within PGA1_c05700 at 582.273 kb on + strand, within PGA1_c05700 at 582.288 kb on + strand, within PGA1_c05700 at 582.332 kb on - strand, within PGA1_c05700 at 582.332 kb on - strand, within PGA1_c05700 at 582.335 kb on + strand, within PGA1_c05700 at 582.335 kb on + strand, within PGA1_c05700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 579,323 - PGA1_c05660 0.71 -1.0 579,419 + PGA1_c05660 0.78 -0.4 579,490 - PGA1_c05660 0.83 +0.2 579,495 - PGA1_c05660 0.83 -0.3 579,511 + PGA1_c05660 0.84 -0.2 579,511 + PGA1_c05660 0.84 +0.2 579,511 + PGA1_c05660 0.84 -2.2 579,519 - PGA1_c05660 0.85 +1.3 579,553 + PGA1_c05660 0.87 +0.7 579,629 - -0.4 579,649 + -1.0 579,649 + +0.7 579,657 - -1.0 579,657 - +1.3 579,679 + -1.0 579,679 + -1.5 579,687 - -1.1 579,688 + -1.0 579,733 - +2.9 579,735 + -1.5 579,744 - -0.7 579,777 - -2.4 579,842 + PGA1_c05670 0.20 -0.3 579,852 + PGA1_c05670 0.22 -0.3 579,898 + PGA1_c05670 0.30 -1.9 579,901 - PGA1_c05670 0.31 -1.0 580,046 + PGA1_c05670 0.57 -0.9 580,054 - PGA1_c05670 0.59 -0.7 580,054 - PGA1_c05670 0.59 +2.7 580,100 - PGA1_c05670 0.67 -1.0 580,112 + PGA1_c05670 0.69 -1.3 580,112 + PGA1_c05670 0.69 -1.0 580,137 + PGA1_c05670 0.74 -2.5 580,145 - PGA1_c05670 0.75 -1.5 580,239 - +1.0 580,239 - +1.3 580,284 + -2.0 580,370 + +0.2 580,429 + PGA1_c05680 0.14 +0.1 580,494 - PGA1_c05680 0.20 -1.7 580,574 + PGA1_c05680 0.28 -1.9 580,800 + PGA1_c05680 0.49 +0.1 580,815 + PGA1_c05680 0.51 -0.2 580,823 - PGA1_c05680 0.51 -1.5 580,976 + PGA1_c05680 0.66 -0.3 581,053 + PGA1_c05680 0.73 +0.8 581,066 - PGA1_c05680 0.74 -0.0 581,089 - PGA1_c05680 0.77 -1.3 581,131 + PGA1_c05680 0.81 -1.7 581,149 - PGA1_c05680 0.82 -0.6 581,151 + PGA1_c05680 0.82 -1.5 581,156 + PGA1_c05680 0.83 +1.3 581,169 - PGA1_c05680 0.84 -0.5 581,189 + PGA1_c05680 0.86 -1.0 581,197 - PGA1_c05680 0.87 +0.9 581,197 - PGA1_c05680 0.87 -1.9 581,197 - PGA1_c05680 0.87 -1.8 581,197 - PGA1_c05680 0.87 +0.5 581,197 - PGA1_c05680 0.87 -1.8 581,267 - -1.9 581,267 - +0.9 581,276 + -0.9 581,276 + -1.2 581,276 + +0.8 581,283 + +0.5 581,284 - -2.2 581,284 - -0.3 581,366 + -0.4 581,440 + -0.5 581,448 - -3.0 581,502 + PGA1_c05690 0.15 -0.6 581,502 - PGA1_c05690 0.15 -0.3 581,530 + PGA1_c05690 0.21 -0.9 581,538 - PGA1_c05690 0.23 -1.3 581,538 - PGA1_c05690 0.23 +0.3 581,538 - PGA1_c05690 0.23 -1.5 581,641 - PGA1_c05690 0.48 +0.5 581,719 + PGA1_c05690 0.67 +0.9 581,719 + PGA1_c05690 0.67 -1.5 581,749 + PGA1_c05690 0.75 -2.4 581,749 + PGA1_c05690 0.75 +1.3 581,770 - PGA1_c05690 0.80 -1.1 581,782 - PGA1_c05690 0.83 -1.8 581,810 + PGA1_c05690 0.90 -0.4 581,818 - -0.6 581,823 - +0.6 581,823 - -2.3 581,841 + +0.2 581,841 + -0.5 581,841 + +1.3 581,841 + -0.7 581,848 - -0.3 581,849 - -2.6 581,849 - +1.3 581,864 - +0.2 581,883 - +0.5 581,888 - -2.2 581,923 - +0.7 581,923 - -1.4 581,923 - -1.0 581,923 - -0.5 581,931 - -2.6 581,954 + -1.0 581,954 + -2.0 581,954 + +1.3 581,954 + +0.5 581,959 + -1.5 581,962 - -0.6 581,966 + +1.3 581,966 + -1.9 581,966 + +0.1 581,966 + -2.3 581,966 + -0.4 581,968 + -0.2 581,972 + -2.7 581,974 - -0.0 581,974 - +0.5 581,981 - -1.3 582,006 - -0.3 582,006 - -1.0 582,008 + -1.8 582,016 - -1.0 582,077 + -0.3 582,082 + +0.3 582,082 + -2.0 582,085 - -1.4 582,085 - -2.2 582,090 - -1.0 582,090 - -1.7 582,090 - -0.2 582,090 - +0.7 582,090 - -2.4 582,090 - -2.5 582,090 - -0.3 582,090 - +0.7 582,090 - +1.6 582,095 + -0.9 582,100 - +1.3 582,159 + +0.5 582,167 - -1.0 582,171 - -1.0 582,171 - +1.0 582,173 + PGA1_c05700 0.10 +1.9 582,192 + PGA1_c05700 0.11 -1.0 582,217 + PGA1_c05700 0.12 -1.4 582,247 - PGA1_c05700 0.14 -1.0 582,273 + PGA1_c05700 0.15 -0.7 582,288 + PGA1_c05700 0.16 -0.6 582,332 - PGA1_c05700 0.19 +0.2 582,332 - PGA1_c05700 0.19 -0.8 582,335 + PGA1_c05700 0.19 +1.0 582,335 + PGA1_c05700 0.19 -1.5
Or see this region's nucleotide sequence