Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3011 and HP15_3012 are separated by 35 nucleotides HP15_3012 and HP15_3013 are separated by 138 nucleotides HP15_3013 and HP15_3014 are separated by 193 nucleotides
HP15_3011: HP15_3011 - imidazole glycerol phosphate synthase subunit HisH, at 3,155,813 to 3,156,490
_3011
HP15_3012: HP15_3012 - imidazoleglycerol-phosphate dehydratase, at 3,156,526 to 3,157,119
_3012
HP15_3013: HP15_3013 - conserved hypothetical protein, at 3,157,258 to 3,157,719
_3013
HP15_3014: HP15_3014 - AsmA family protein, at 3,157,913 to 3,160,078
_3014
Position (kb)
3157
3158 Strain fitness (log2 ratio)
-1
0
1 at 3156.504 kb on - strand at 3157.365 kb on - strand, within HP15_3013 at 3157.376 kb on - strand, within HP15_3013 at 3157.445 kb on + strand, within HP15_3013 at 3157.521 kb on - strand, within HP15_3013 at 3157.690 kb on + strand at 3157.722 kb on - strand at 3157.745 kb on - strand at 3157.834 kb on + strand at 3157.842 kb on - strand at 3157.850 kb on + strand at 3157.952 kb on - strand at 3158.046 kb on + strand at 3158.097 kb on + strand at 3158.111 kb on - strand at 3158.167 kb on + strand, within HP15_3014 at 3158.205 kb on + strand, within HP15_3014 at 3158.221 kb on - strand, within HP15_3014 at 3158.428 kb on - strand, within HP15_3014
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 3,156,504 - -0.1 3,157,365 - HP15_3013 0.23 -0.2 3,157,376 - HP15_3013 0.26 +0.8 3,157,445 + HP15_3013 0.40 +0.2 3,157,521 - HP15_3013 0.57 -0.2 3,157,690 + -0.2 3,157,722 - -1.3 3,157,745 - -0.0 3,157,834 + +0.9 3,157,842 - -0.1 3,157,850 + +0.5 3,157,952 - +0.3 3,158,046 + +0.0 3,158,097 + +0.6 3,158,111 - +0.0 3,158,167 + HP15_3014 0.12 -0.4 3,158,205 + HP15_3014 0.13 -0.5 3,158,221 - HP15_3014 0.14 +0.3 3,158,428 - HP15_3014 0.24 +0.3
Or see this region's nucleotide sequence