Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22980

Experiment: L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate (C)
2,382,039	+		PGA1_c22970	0.49	+0.1
2,382,040	+		PGA1_c22970	0.49	+0.9
2,382,048	-		PGA1_c22970	0.49	-0.4
2,382,058	+		PGA1_c22970	0.50	+1.1
2,382,060	-		PGA1_c22970	0.50	+0.0
2,382,077	-		PGA1_c22970	0.51	-1.9
2,382,095	-		PGA1_c22970	0.52	-2.3
2,382,107	+		PGA1_c22970	0.52	+1.0
2,382,115	-		PGA1_c22970	0.53	+0.2
2,382,144	+		PGA1_c22970	0.54	+1.6
2,382,154	+		PGA1_c22970	0.55	-1.0
2,382,154	+		PGA1_c22970	0.55	+1.3
2,382,154	+		PGA1_c22970	0.55	+0.6
2,382,162	-		PGA1_c22970	0.55	+0.6
2,382,258	-		PGA1_c22970	0.60	+0.5
2,382,258	-		PGA1_c22970	0.60	+0.8
2,382,304	-		PGA1_c22970	0.63	+1.8
2,382,308	+		PGA1_c22970	0.63	-0.8
2,382,316	-		PGA1_c22970	0.63	+0.2
2,382,316	-		PGA1_c22970	0.63	-1.6
2,382,316	-		PGA1_c22970	0.63	-0.0
2,382,356	-		PGA1_c22970	0.65	+0.9
2,382,400	-		PGA1_c22970	0.68	+0.1
2,382,407	-		PGA1_c22970	0.68	+0.1
2,382,471	+		PGA1_c22970	0.72	+0.5
2,382,479	-		PGA1_c22970	0.72	+1.4
2,382,479	-		PGA1_c22970	0.72	-0.4
2,382,479	-		PGA1_c22970	0.72	+0.1
2,382,479	-		PGA1_c22970	0.72	-1.0
2,382,528	-		PGA1_c22970	0.75	+0.2
2,382,530	+		PGA1_c22970	0.75	+0.6
2,382,530	+		PGA1_c22970	0.75	+1.7
2,382,530	+		PGA1_c22970	0.75	+0.8
2,382,533	-		PGA1_c22970	0.75	+0.3
2,382,538	-		PGA1_c22970	0.75	-0.3
2,382,538	-		PGA1_c22970	0.75	-0.4
2,382,548	-		PGA1_c22970	0.76	-0.9
2,382,592	-		PGA1_c22970	0.78	+0.9
2,382,615	+		PGA1_c22970	0.79	-1.8
2,382,633	+		PGA1_c22970	0.80	-0.7
2,382,642	+		PGA1_c22970	0.81	-0.6
2,382,650	-		PGA1_c22970	0.81	+0.8
2,382,675	-		PGA1_c22970	0.82	-0.1
2,382,720	-		PGA1_c22970	0.85	-1.9
2,382,744	+		PGA1_c22970	0.86	-1.7
2,382,764	+		PGA1_c22970	0.87	+0.9
2,382,764	+		PGA1_c22970	0.87	-0.9
2,382,769	+		PGA1_c22970	0.87	-2.0
2,382,772	-		PGA1_c22970	0.87	+0.3
2,382,777	-		PGA1_c22970	0.88	+0.6
2,382,782	-		PGA1_c22970	0.88	+0.0
2,382,811	-		PGA1_c22970	0.89	+1.3
2,382,842	-				+0.1
2,382,858	+				-1.2
2,382,859	+				-0.6
2,382,859	+				-0.1
2,382,859	+				+0.8
2,382,867	-				-0.2
2,382,867	-				+2.7
2,382,867	-				-0.5
2,382,911	-				-1.1
2,382,943	-				+0.9
2,382,943	-				-0.8
2,382,947	+				-1.7
2,382,948	-				+0.3
2,382,959	+				+0.8
2,382,987	+				+1.1
2,383,082	+				+0.7
2,383,116	-				+0.9
2,383,128	+				+0.7
2,383,148	-				+1.1
2,383,155	+				+1.0
2,383,164	-				+0.5
2,383,222	-		PGA1_c22980	0.12	+0.8
2,383,271	-		PGA1_c22980	0.15	-0.2
2,383,292	+		PGA1_c22980	0.16	+0.0
2,383,436	-		PGA1_c22980	0.24	-0.1
2,383,451	-		PGA1_c22980	0.25	-1.4
2,383,473	-		PGA1_c22980	0.26	+0.4
2,383,473	-		PGA1_c22980	0.26	-0.9
2,383,493	+		PGA1_c22980	0.27	-0.7
2,383,493	+		PGA1_c22980	0.27	-0.4
2,383,501	-		PGA1_c22980	0.28	-0.3
2,383,501	-		PGA1_c22980	0.28	+0.6
2,383,600	-		PGA1_c22980	0.33	+0.0
2,383,614	+		PGA1_c22980	0.34	+0.3
2,383,648	+		PGA1_c22980	0.36	+0.9
2,383,672	+		PGA1_c22980	0.37	-0.9
2,383,674	-		PGA1_c22980	0.37	-0.0
2,383,730	+		PGA1_c22980	0.40	+0.3
2,383,732	+		PGA1_c22980	0.40	+0.7
2,383,738	-		PGA1_c22980	0.41	-0.0
2,383,738	-		PGA1_c22980	0.41	-0.6
2,383,738	-		PGA1_c22980	0.41	-1.9
2,383,753	+		PGA1_c22980	0.42	-1.7
2,383,873	+		PGA1_c22980	0.48	+0.5
2,383,873	+		PGA1_c22980	0.48	-0.4
2,383,911	+		PGA1_c22980	0.50	+0.6
2,383,912	+		PGA1_c22980	0.50	+0.7
2,383,919	-		PGA1_c22980	0.51	+0.4
2,383,919	-		PGA1_c22980	0.51	-2.0
2,383,938	-		PGA1_c22980	0.52	-0.7
2,383,939	+		PGA1_c22980	0.52	-1.2
2,383,947	-		PGA1_c22980	0.52	+2.6
2,383,947	-		PGA1_c22980	0.52	-0.1
2,383,947	-		PGA1_c22980	0.52	+0.7
2,383,971	+		PGA1_c22980	0.54	-0.0
2,383,971	+		PGA1_c22980	0.54	-1.0
2,383,971	+		PGA1_c22980	0.54	-0.9
2,383,979	-		PGA1_c22980	0.54	-2.0
2,383,979	-		PGA1_c22980	0.54	-0.1
2,383,979	-		PGA1_c22980	0.54	-0.1
2,383,979	-		PGA1_c22980	0.54	+0.3
2,383,979	-		PGA1_c22980	0.54	-0.1
2,383,979	-		PGA1_c22980	0.54	+0.9
2,383,979	-		PGA1_c22980	0.54	-0.7
2,383,979	-		PGA1_c22980	0.54	+0.4
2,384,029	+		PGA1_c22980	0.57	-1.7
2,384,063	+		PGA1_c22980	0.59	-1.2
2,384,135	+		PGA1_c22980	0.63	-1.9
2,384,138	-		PGA1_c22980	0.63	-0.5
2,384,145	+		PGA1_c22980	0.63	-0.5
2,384,197	-		PGA1_c22980	0.66	-0.7
2,384,197	-		PGA1_c22980	0.66	+0.7
2,384,201	+		PGA1_c22980	0.66	+0.3
2,384,201	+		PGA1_c22980	0.66	-1.2
2,384,225	+		PGA1_c22980	0.68	-0.7
2,384,312	-		PGA1_c22980	0.72	-0.4
2,384,350	+		PGA1_c22980	0.75	+0.2
2,384,373	+		PGA1_c22980	0.76	-0.1
2,384,441	-		PGA1_c22980	0.80	-2.6
2,384,460	-		PGA1_c22980	0.81	-0.4
2,384,460	-		PGA1_c22980	0.81	+0.9
2,384,462	+		PGA1_c22980	0.81	-0.5
2,384,462	+		PGA1_c22980	0.81	-0.3
2,384,462	+		PGA1_c22980	0.81	+1.4
2,384,470	-		PGA1_c22980	0.81	+1.1
2,384,470	-		PGA1_c22980	0.81	-0.4
2,384,485	+		PGA1_c22980	0.82	-0.3
2,384,555	+		PGA1_c22980	0.86	-2.0
2,384,555	+		PGA1_c22980	0.86	-0.3
2,384,656	-				-2.7
2,384,676	-				+1.7
2,384,676	-				-1.4
2,384,875	+		PGA1_c22990	0.13	-0.3
2,384,875	+		PGA1_c22990	0.13	-2.3
2,384,952	-		PGA1_c22990	0.26	-0.9
2,384,965	-		PGA1_c22990	0.28	+0.5
2,385,040	-		PGA1_c22990	0.41	+0.1
2,385,060	+		PGA1_c22990	0.45	+2.3
2,385,142	+		PGA1_c22990	0.58	+0.8
2,385,179	-		PGA1_c22990	0.65	-0.8
2,385,198	+		PGA1_c22990	0.68	-0.2
2,385,216	+		PGA1_c22990	0.71	+0.3
2,385,216	+		PGA1_c22990	0.71	+1.0
2,385,229	+		PGA1_c22990	0.73	-1.4
2,385,229	+		PGA1_c22990	0.73	+0.2
2,385,239	+		PGA1_c22990	0.75	-1.2
2,385,240	+		PGA1_c22990	0.75	+0.1
2,385,286	+		PGA1_c22990	0.83	-0.4
2,385,376	+				+0.7
2,385,514	-				-1.7
2,385,549	+				-0.6
2,385,552	-				+1.1
2,385,552	-				+0.5
2,385,559	-				-0.6
2,385,571	+				-0.9
2,385,686	-		PGA1_c23000	0.44	-3.0
2,385,740	-		PGA1_c23000	0.63	-0.8
2,385,740	-		PGA1_c23000	0.63	-1.5