Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02070 and PGA1_c02080 overlap by 1 nucleotides PGA1_c02080 and PGA1_c02090 overlap by 4 nucleotides PGA1_c02090 and PGA1_c02100 are separated by 439 nucleotides
PGA1_c02070: PGA1_c02070 - putative GTP binding protein EngB, at 189,252 to 189,902
_c02070
PGA1_c02080: PGA1_c02080 - Uncharacterized Fe-S protein, at 189,902 to 190,654
_c02080
PGA1_c02090: PGA1_c02090 - inner membrane protein OxaA, at 190,651 to 192,468
_c02090
PGA1_c02100: PGA1_c02100 - diguanylate cyclase (GGDEF) domain-containing protein, at 192,908 to 194,452
_c02100
Position (kb) 190
191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 192.549 kb on + strand at 192.580 kb on + strand at 192.667 kb on + strand at 192.715 kb on + strand at 192.723 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.785 kb on + strand at 192.785 kb on + strand at 192.799 kb on + strand at 192.804 kb on + strand at 192.807 kb on - strand at 192.812 kb on - strand at 192.834 kb on - strand at 192.863 kb on + strand at 192.868 kb on + strand at 192.897 kb on - strand at 192.982 kb on + strand at 193.014 kb on - strand at 193.018 kb on + strand at 193.093 kb on + strand, within PGA1_c02100 at 193.093 kb on + strand, within PGA1_c02100 at 193.096 kb on - strand, within PGA1_c02100 at 193.149 kb on - strand, within PGA1_c02100 at 193.149 kb on - strand, within PGA1_c02100 at 193.190 kb on - strand, within PGA1_c02100 at 193.205 kb on + strand, within PGA1_c02100 at 193.205 kb on - strand, within PGA1_c02100 at 193.213 kb on - strand, within PGA1_c02100 at 193.225 kb on + strand, within PGA1_c02100 at 193.226 kb on + strand, within PGA1_c02100 at 193.329 kb on + strand, within PGA1_c02100 at 193.339 kb on + strand, within PGA1_c02100 at 193.347 kb on - strand, within PGA1_c02100 at 193.373 kb on - strand, within PGA1_c02100 at 193.381 kb on + strand, within PGA1_c02100 at 193.386 kb on + strand, within PGA1_c02100 at 193.410 kb on + strand, within PGA1_c02100 at 193.420 kb on + strand, within PGA1_c02100 at 193.428 kb on - strand, within PGA1_c02100 at 193.449 kb on - strand, within PGA1_c02100 at 193.456 kb on + strand, within PGA1_c02100
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 192,549 + -2.5 192,580 + -0.6 192,667 + -0.8 192,715 + -0.1 192,723 - +0.7 192,743 - +0.1 192,743 - -0.6 192,743 - -0.0 192,743 - -0.5 192,743 - -1.2 192,743 - -0.0 192,743 - +1.0 192,743 - -1.2 192,743 - -2.3 192,785 + -0.6 192,785 + -0.2 192,799 + +2.2 192,804 + +0.7 192,807 - +0.6 192,812 - -2.2 192,834 - +0.4 192,863 + -1.3 192,868 + -1.1 192,897 - -1.0 192,982 + +0.4 193,014 - -0.3 193,018 + +0.4 193,093 + PGA1_c02100 0.12 -1.9 193,093 + PGA1_c02100 0.12 -1.2 193,096 - PGA1_c02100 0.12 +0.6 193,149 - PGA1_c02100 0.16 -0.6 193,149 - PGA1_c02100 0.16 +0.6 193,190 - PGA1_c02100 0.18 +3.9 193,205 + PGA1_c02100 0.19 +0.0 193,205 - PGA1_c02100 0.19 -2.1 193,213 - PGA1_c02100 0.20 +0.2 193,225 + PGA1_c02100 0.21 -1.3 193,226 + PGA1_c02100 0.21 -1.0 193,329 + PGA1_c02100 0.27 -0.6 193,339 + PGA1_c02100 0.28 -0.4 193,347 - PGA1_c02100 0.28 -2.9 193,373 - PGA1_c02100 0.30 +0.2 193,381 + PGA1_c02100 0.31 -0.6 193,386 + PGA1_c02100 0.31 -1.6 193,410 + PGA1_c02100 0.32 -0.3 193,420 + PGA1_c02100 0.33 +0.2 193,428 - PGA1_c02100 0.34 -0.6 193,449 - PGA1_c02100 0.35 -0.2 193,456 + PGA1_c02100 0.35 -1.8
Or see this region's nucleotide sequence