Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16500

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c16490 and PGA1_c16500 are separated by 473 nucleotidesPGA1_c16500 and PGA1_c16510 are separated by 63 nucleotidesPGA1_c16510 and PGA1_c16520 are separated by 73 nucleotides PGA1_c16490: PGA1_c16490 - hypothetical protein, at 1,710,797 to 1,711,393 _c16490 PGA1_c16500: PGA1_c16500 - trimethylamine methyltransferase MttB, at 1,711,867 to 1,713,417 _c16500 PGA1_c16510: PGA1_c16510 - glycosyl transferase-like protein, at 1,713,481 to 1,714,224 _c16510 PGA1_c16520: PGA1_c16520 - putative branched-chain amino acid transporter, ATP-binding protein, at 1,714,298 to 1,714,987 _c16520 Position (kb) 1711 1712 1713 1714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1710.907 kb on + strand, within PGA1_c16490at 1710.933 kb on - strand, within PGA1_c16490at 1710.940 kb on - strand, within PGA1_c16490at 1711.058 kb on + strand, within PGA1_c16490at 1711.063 kb on + strand, within PGA1_c16490at 1711.068 kb on + strand, within PGA1_c16490at 1711.144 kb on + strand, within PGA1_c16490at 1711.144 kb on + strand, within PGA1_c16490at 1711.177 kb on - strand, within PGA1_c16490at 1711.201 kb on + strand, within PGA1_c16490at 1711.207 kb on - strand, within PGA1_c16490at 1711.255 kb on - strand, within PGA1_c16490at 1711.255 kb on - strand, within PGA1_c16490at 1711.269 kb on + strand, within PGA1_c16490at 1711.270 kb on + strand, within PGA1_c16490at 1711.307 kb on + strand, within PGA1_c16490at 1711.325 kb on - strand, within PGA1_c16490at 1711.339 kb on + strandat 1711.397 kb on - strandat 1711.404 kb on - strandat 1711.420 kb on + strandat 1711.422 kb on + strandat 1711.422 kb on + strandat 1711.430 kb on - strandat 1711.459 kb on - strandat 1711.479 kb on + strandat 1711.494 kb on - strandat 1711.521 kb on + strandat 1711.529 kb on - strandat 1711.804 kb on + strandat 1711.871 kb on - strandat 1711.871 kb on - strandat 1711.894 kb on - strandat 1711.894 kb on - strandat 1712.122 kb on - strand, within PGA1_c16500at 1712.155 kb on - strand, within PGA1_c16500at 1712.165 kb on - strand, within PGA1_c16500at 1712.199 kb on + strand, within PGA1_c16500at 1712.232 kb on - strand, within PGA1_c16500at 1712.256 kb on - strand, within PGA1_c16500at 1712.346 kb on - strand, within PGA1_c16500at 1712.372 kb on - strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.381 kb on + strand, within PGA1_c16500at 1712.382 kb on + strand, within PGA1_c16500at 1712.389 kb on - strand, within PGA1_c16500at 1712.389 kb on - strand, within PGA1_c16500at 1712.389 kb on - strand, within PGA1_c16500at 1712.401 kb on + strand, within PGA1_c16500at 1712.447 kb on + strand, within PGA1_c16500at 1712.455 kb on - strand, within PGA1_c16500at 1712.455 kb on - strand, within PGA1_c16500at 1712.455 kb on - strand, within PGA1_c16500at 1712.455 kb on - strand, within PGA1_c16500at 1712.506 kb on + strand, within PGA1_c16500at 1712.506 kb on + strand, within PGA1_c16500at 1712.542 kb on + strand, within PGA1_c16500at 1712.590 kb on - strand, within PGA1_c16500at 1712.590 kb on - strand, within PGA1_c16500at 1712.590 kb on - strand, within PGA1_c16500at 1712.678 kb on - strand, within PGA1_c16500at 1712.690 kb on - strand, within PGA1_c16500at 1712.725 kb on - strand, within PGA1_c16500at 1712.813 kb on + strand, within PGA1_c16500at 1713.041 kb on + strand, within PGA1_c16500at 1713.046 kb on + strand, within PGA1_c16500at 1713.067 kb on - strand, within PGA1_c16500at 1713.119 kb on + strand, within PGA1_c16500at 1713.119 kb on + strand, within PGA1_c16500at 1713.119 kb on + strand, within PGA1_c16500at 1713.119 kb on + strand, within PGA1_c16500at 1713.119 kb on + strand, within PGA1_c16500at 1713.119 kb on + strand, within PGA1_c16500at 1713.119 kb on + strand, within PGA1_c16500at 1713.121 kb on + strand, within PGA1_c16500at 1713.127 kb on - strand, within PGA1_c16500at 1713.127 kb on - strand, within PGA1_c16500at 1713.127 kb on - strand, within PGA1_c16500at 1713.138 kb on - strand, within PGA1_c16500at 1713.245 kb on + strand, within PGA1_c16500at 1713.271 kb on - strandat 1713.275 kb on + strandat 1713.280 kb on + strandat 1713.283 kb on - strandat 1713.290 kb on + strandat 1713.293 kb on - strandat 1713.318 kb on - strandat 1713.460 kb on - strandat 1713.604 kb on + strand, within PGA1_c16510at 1713.607 kb on - strand, within PGA1_c16510at 1713.717 kb on - strand, within PGA1_c16510at 1713.717 kb on - strand, within PGA1_c16510at 1713.815 kb on - strand, within PGA1_c16510at 1713.825 kb on - strand, within PGA1_c16510at 1713.950 kb on + strand, within PGA1_c16510at 1714.032 kb on - strand, within PGA1_c16510at 1714.051 kb on + strand, within PGA1_c16510at 1714.154 kb on - strandat 1714.166 kb on - strandat 1714.255 kb on - strandat 1714.279 kb on + strandat 1714.360 kb on - strandat 1714.361 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
1,710,907 + PGA1_c16490 0.18 +0.5
1,710,933 - PGA1_c16490 0.23 +0.2
1,710,940 - PGA1_c16490 0.24 +1.0
1,711,058 + PGA1_c16490 0.44 -0.2
1,711,063 + PGA1_c16490 0.45 -2.5
1,711,068 + PGA1_c16490 0.45 +0.5
1,711,144 + PGA1_c16490 0.58 -0.7
1,711,144 + PGA1_c16490 0.58 -1.4
1,711,177 - PGA1_c16490 0.64 +0.2
1,711,201 + PGA1_c16490 0.68 +1.0
1,711,207 - PGA1_c16490 0.69 -0.8
1,711,255 - PGA1_c16490 0.77 -0.5
1,711,255 - PGA1_c16490 0.77 -1.0
1,711,269 + PGA1_c16490 0.79 +0.1
1,711,270 + PGA1_c16490 0.79 +0.1
1,711,307 + PGA1_c16490 0.85 -2.0
1,711,325 - PGA1_c16490 0.88 -0.6
1,711,339 + -2.2
1,711,397 - -0.5
1,711,404 - -1.4
1,711,420 + -1.7
1,711,422 + +0.5
1,711,422 + -1.2
1,711,430 - +0.3
1,711,459 - -0.6
1,711,479 + -1.8
1,711,494 - +0.3
1,711,521 + -0.0
1,711,529 - +0.2
1,711,804 + -0.0
1,711,871 - -0.3
1,711,871 - -0.4
1,711,894 - +0.8
1,711,894 - +0.6
1,712,122 - PGA1_c16500 0.16 -1.3
1,712,155 - PGA1_c16500 0.19 -0.0
1,712,165 - PGA1_c16500 0.19 -1.3
1,712,199 + PGA1_c16500 0.21 -0.9
1,712,232 - PGA1_c16500 0.24 +1.0
1,712,256 - PGA1_c16500 0.25 +0.1
1,712,346 - PGA1_c16500 0.31 +0.6
1,712,372 - PGA1_c16500 0.33 -0.2
1,712,381 + PGA1_c16500 0.33 -1.1
1,712,381 + PGA1_c16500 0.33 +0.4
1,712,381 + PGA1_c16500 0.33 -1.2
1,712,381 + PGA1_c16500 0.33 -1.1
1,712,381 + PGA1_c16500 0.33 +0.1
1,712,381 + PGA1_c16500 0.33 +1.0
1,712,381 + PGA1_c16500 0.33 -0.6
1,712,381 + PGA1_c16500 0.33 +0.6
1,712,381 + PGA1_c16500 0.33 -1.2
1,712,381 + PGA1_c16500 0.33 -0.6
1,712,381 + PGA1_c16500 0.33 -2.4
1,712,381 + PGA1_c16500 0.33 -2.8
1,712,381 + PGA1_c16500 0.33 -1.0
1,712,381 + PGA1_c16500 0.33 +0.7
1,712,381 + PGA1_c16500 0.33 -1.2
1,712,381 + PGA1_c16500 0.33 -0.5
1,712,381 + PGA1_c16500 0.33 +1.4
1,712,381 + PGA1_c16500 0.33 -0.8
1,712,382 + PGA1_c16500 0.33 +0.8
1,712,389 - PGA1_c16500 0.34 +0.5
1,712,389 - PGA1_c16500 0.34 -1.8
1,712,389 - PGA1_c16500 0.34 -0.6
1,712,401 + PGA1_c16500 0.34 +0.7
1,712,447 + PGA1_c16500 0.37 +0.2
1,712,455 - PGA1_c16500 0.38 -1.4
1,712,455 - PGA1_c16500 0.38 -0.0
1,712,455 - PGA1_c16500 0.38 -0.0
1,712,455 - PGA1_c16500 0.38 -0.6
1,712,506 + PGA1_c16500 0.41 -1.5
1,712,506 + PGA1_c16500 0.41 +0.3
1,712,542 + PGA1_c16500 0.44 -1.4
1,712,590 - PGA1_c16500 0.47 -1.8
1,712,590 - PGA1_c16500 0.47 +0.5
1,712,590 - PGA1_c16500 0.47 -2.7
1,712,678 - PGA1_c16500 0.52 -0.9
1,712,690 - PGA1_c16500 0.53 -1.9
1,712,725 - PGA1_c16500 0.55 +0.5
1,712,813 + PGA1_c16500 0.61 +0.5
1,713,041 + PGA1_c16500 0.76 +1.3
1,713,046 + PGA1_c16500 0.76 +0.8
1,713,067 - PGA1_c16500 0.77 +0.6
1,713,119 + PGA1_c16500 0.81 +0.4
1,713,119 + PGA1_c16500 0.81 +0.5
1,713,119 + PGA1_c16500 0.81 -0.3
1,713,119 + PGA1_c16500 0.81 -1.4
1,713,119 + PGA1_c16500 0.81 -0.4
1,713,119 + PGA1_c16500 0.81 -1.4
1,713,119 + PGA1_c16500 0.81 +0.2
1,713,121 + PGA1_c16500 0.81 +0.4
1,713,127 - PGA1_c16500 0.81 +0.4
1,713,127 - PGA1_c16500 0.81 -2.8
1,713,127 - PGA1_c16500 0.81 -2.6
1,713,138 - PGA1_c16500 0.82 +1.4
1,713,245 + PGA1_c16500 0.89 -1.4
1,713,271 - +0.4
1,713,275 + -0.6
1,713,280 + +1.7
1,713,283 - -1.0
1,713,290 + +0.2
1,713,293 - -1.6
1,713,318 - -1.4
1,713,460 - +0.7
1,713,604 + PGA1_c16510 0.17 -0.1
1,713,607 - PGA1_c16510 0.17 -0.6
1,713,717 - PGA1_c16510 0.32 +0.6
1,713,717 - PGA1_c16510 0.32 -0.2
1,713,815 - PGA1_c16510 0.45 +1.3
1,713,825 - PGA1_c16510 0.46 -0.4
1,713,950 + PGA1_c16510 0.63 +2.0
1,714,032 - PGA1_c16510 0.74 -1.5
1,714,051 + PGA1_c16510 0.77 +0.7
1,714,154 - -2.4
1,714,166 - +0.1
1,714,255 - -2.0
1,714,279 + -0.0
1,714,360 - -0.2
1,714,361 - +1.0

Or see this region's nucleotide sequence