Strain Fitness in Marinobacter adhaerens HP15 around HP15_1385

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1383 and HP15_1384 are separated by 7 nucleotidesHP15_1384 and HP15_1385 are separated by 95 nucleotidesHP15_1385 and HP15_1386 overlap by 1 nucleotides HP15_1383: HP15_1383 - AB-hydrolase YheT, putative, at 1,458,369 to 1,459,292 _1383 HP15_1384: HP15_1384 - lipolytic enzyme, G-D-S-L, at 1,459,300 to 1,459,887 _1384 HP15_1385: HP15_1385 - ABC transporter ATP-binding protein-like protein, at 1,459,983 to 1,460,711 _1385 HP15_1386: HP15_1386 - ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 1,460,711 to 1,463,197 _1386 Position (kb) 1459 1460 1461Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1459.066 kb on - strand, within HP15_1383at 1459.068 kb on - strand, within HP15_1383at 1459.389 kb on - strand, within HP15_1384at 1459.505 kb on - strand, within HP15_1384at 1459.542 kb on + strand, within HP15_1384at 1459.550 kb on + strand, within HP15_1384at 1459.741 kb on + strand, within HP15_1384at 1459.806 kb on - strand, within HP15_1384at 1459.810 kb on + strand, within HP15_1384at 1459.906 kb on + strandat 1459.920 kb on - strandat 1460.092 kb on + strand, within HP15_1385at 1460.151 kb on + strand, within HP15_1385at 1460.187 kb on + strand, within HP15_1385at 1460.229 kb on - strand, within HP15_1385at 1460.248 kb on - strand, within HP15_1385at 1460.409 kb on - strand, within HP15_1385at 1460.426 kb on - strand, within HP15_1385at 1460.431 kb on + strand, within HP15_1385at 1460.591 kb on + strand, within HP15_1385at 1460.601 kb on - strand, within HP15_1385at 1460.627 kb on + strand, within HP15_1385at 1460.691 kb on + strandat 1460.691 kb on + strandat 1460.814 kb on + strandat 1460.990 kb on + strand, within HP15_1386at 1461.084 kb on - strand, within HP15_1386at 1461.402 kb on - strand, within HP15_1386at 1461.527 kb on + strand, within HP15_1386at 1461.549 kb on + strand, within HP15_1386at 1461.557 kb on - strand, within HP15_1386at 1461.637 kb on + strand, within HP15_1386

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,459,066 - HP15_1383 0.75 +0.4
1,459,068 - HP15_1383 0.76 -0.2
1,459,389 - HP15_1384 0.15 +2.1
1,459,505 - HP15_1384 0.35 -0.3
1,459,542 + HP15_1384 0.41 -1.0
1,459,550 + HP15_1384 0.43 -0.7
1,459,741 + HP15_1384 0.75 -0.6
1,459,806 - HP15_1384 0.86 -0.3
1,459,810 + HP15_1384 0.87 +3.1
1,459,906 + +0.8
1,459,920 - +0.4
1,460,092 + HP15_1385 0.15 -1.7
1,460,151 + HP15_1385 0.23 -0.1
1,460,187 + HP15_1385 0.28 -0.8
1,460,229 - HP15_1385 0.34 -1.2
1,460,248 - HP15_1385 0.36 +0.3
1,460,409 - HP15_1385 0.58 -3.0
1,460,426 - HP15_1385 0.61 +0.4
1,460,431 + HP15_1385 0.61 -0.8
1,460,591 + HP15_1385 0.83 -0.1
1,460,601 - HP15_1385 0.85 -1.2
1,460,627 + HP15_1385 0.88 +0.7
1,460,691 + -0.4
1,460,691 + -0.4
1,460,814 + +1.8
1,460,990 + HP15_1386 0.11 -1.1
1,461,084 - HP15_1386 0.15 +1.0
1,461,402 - HP15_1386 0.28 -0.5
1,461,527 + HP15_1386 0.33 +0.2
1,461,549 + HP15_1386 0.34 +0.2
1,461,557 - HP15_1386 0.34 +0.5
1,461,637 + HP15_1386 0.37 -0.2

Or see this region's nucleotide sequence