Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1383 and HP15_1384 are separated by 7 nucleotides HP15_1384 and HP15_1385 are separated by 95 nucleotides HP15_1385 and HP15_1386 overlap by 1 nucleotides
HP15_1383: HP15_1383 - AB-hydrolase YheT, putative, at 1,458,369 to 1,459,292
_1383
HP15_1384: HP15_1384 - lipolytic enzyme, G-D-S-L, at 1,459,300 to 1,459,887
_1384
HP15_1385: HP15_1385 - ABC transporter ATP-binding protein-like protein, at 1,459,983 to 1,460,711
_1385
HP15_1386: HP15_1386 - ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 1,460,711 to 1,463,197
_1386
Position (kb)
1459
1460
1461 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1459.066 kb on - strand, within HP15_1383 at 1459.068 kb on - strand, within HP15_1383 at 1459.389 kb on - strand, within HP15_1384 at 1459.505 kb on - strand, within HP15_1384 at 1459.542 kb on + strand, within HP15_1384 at 1459.550 kb on + strand, within HP15_1384 at 1459.741 kb on + strand, within HP15_1384 at 1459.806 kb on - strand, within HP15_1384 at 1459.810 kb on + strand, within HP15_1384 at 1459.906 kb on + strand at 1459.920 kb on - strand at 1460.092 kb on + strand, within HP15_1385 at 1460.151 kb on + strand, within HP15_1385 at 1460.187 kb on + strand, within HP15_1385 at 1460.229 kb on - strand, within HP15_1385 at 1460.248 kb on - strand, within HP15_1385 at 1460.409 kb on - strand, within HP15_1385 at 1460.426 kb on - strand, within HP15_1385 at 1460.431 kb on + strand, within HP15_1385 at 1460.591 kb on + strand, within HP15_1385 at 1460.601 kb on - strand, within HP15_1385 at 1460.627 kb on + strand, within HP15_1385 at 1460.691 kb on + strand at 1460.691 kb on + strand at 1460.814 kb on + strand at 1460.990 kb on + strand, within HP15_1386 at 1461.084 kb on - strand, within HP15_1386 at 1461.402 kb on - strand, within HP15_1386 at 1461.527 kb on + strand, within HP15_1386 at 1461.549 kb on + strand, within HP15_1386 at 1461.557 kb on - strand, within HP15_1386 at 1461.637 kb on + strand, within HP15_1386
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,459,066 - HP15_1383 0.75 +0.4 1,459,068 - HP15_1383 0.76 -0.2 1,459,389 - HP15_1384 0.15 +2.1 1,459,505 - HP15_1384 0.35 -0.3 1,459,542 + HP15_1384 0.41 -1.0 1,459,550 + HP15_1384 0.43 -0.7 1,459,741 + HP15_1384 0.75 -0.6 1,459,806 - HP15_1384 0.86 -0.3 1,459,810 + HP15_1384 0.87 +3.1 1,459,906 + +0.8 1,459,920 - +0.4 1,460,092 + HP15_1385 0.15 -1.7 1,460,151 + HP15_1385 0.23 -0.1 1,460,187 + HP15_1385 0.28 -0.8 1,460,229 - HP15_1385 0.34 -1.2 1,460,248 - HP15_1385 0.36 +0.3 1,460,409 - HP15_1385 0.58 -3.0 1,460,426 - HP15_1385 0.61 +0.4 1,460,431 + HP15_1385 0.61 -0.8 1,460,591 + HP15_1385 0.83 -0.1 1,460,601 - HP15_1385 0.85 -1.2 1,460,627 + HP15_1385 0.88 +0.7 1,460,691 + -0.4 1,460,691 + -0.4 1,460,814 + +1.8 1,460,990 + HP15_1386 0.11 -1.1 1,461,084 - HP15_1386 0.15 +1.0 1,461,402 - HP15_1386 0.28 -0.5 1,461,527 + HP15_1386 0.33 +0.2 1,461,549 + HP15_1386 0.34 +0.2 1,461,557 - HP15_1386 0.34 +0.5 1,461,637 + HP15_1386 0.37 -0.2
Or see this region's nucleotide sequence