Strain Fitness in Shewanella amazonensis SB2B around Sama_2113

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
2,554,741	+				-0.3
2,554,741	+				-0.4
2,554,742	-				-1.4
2,554,742	-				-1.2
2,554,742	-				+0.9
2,554,742	-				-1.6
2,554,787	-				+0.8
2,554,787	-				-3.0
2,554,787	-				-0.1
2,554,787	-				-0.2
2,554,844	+		Sama_2112	0.15	-2.6
2,554,845	-		Sama_2112	0.15	-2.8
2,554,845	-		Sama_2112	0.15	-1.4
2,554,873	-		Sama_2112	0.18	-0.5
2,554,877	+		Sama_2112	0.19	+0.5
2,554,877	+		Sama_2112	0.19	+0.2
2,554,878	-		Sama_2112	0.19	-0.2
2,554,899	-		Sama_2112	0.21	-0.4
2,554,927	+		Sama_2112	0.25	+0.1
2,554,927	+		Sama_2112	0.25	-0.9
2,554,927	+		Sama_2112	0.25	+0.8
2,554,928	-		Sama_2112	0.25	-1.5
2,554,930	+		Sama_2112	0.25	+1.3
2,554,931	-		Sama_2112	0.25	+0.0
2,554,938	+		Sama_2112	0.26	-0.1
2,554,951	+		Sama_2112	0.27	+0.9
2,554,952	-		Sama_2112	0.27	+0.8
2,554,952	-		Sama_2112	0.27	+0.8
2,554,961	+		Sama_2112	0.28	-0.2
2,554,961	+		Sama_2112	0.28	-1.1
2,554,962	-		Sama_2112	0.28	-0.0
2,554,971	+		Sama_2112	0.30	+2.8
2,554,971	+		Sama_2112	0.30	+0.8
2,554,971	+		Sama_2112	0.30	+1.5
2,554,972	-		Sama_2112	0.30	-0.4
2,554,972	-		Sama_2112	0.30	+0.0
2,554,972	-		Sama_2112	0.30	-0.1
2,555,020	+		Sama_2112	0.35	+1.3
2,555,021	-		Sama_2112	0.35	-0.3
2,555,021	-		Sama_2112	0.35	-0.2
2,555,022	+		Sama_2112	0.35	+2.6
2,555,022	+		Sama_2112	0.35	+0.0
2,555,022	+		Sama_2112	0.35	+2.1
2,555,022	+		Sama_2112	0.35	+0.7
2,555,022	+		Sama_2112	0.35	-1.0
2,555,022	+		Sama_2112	0.35	+0.0
2,555,022	+		Sama_2112	0.35	+0.7
2,555,022	+		Sama_2112	0.35	+0.9
2,555,022	+		Sama_2112	0.35	-0.1
2,555,023	-		Sama_2112	0.35	-0.2
2,555,023	-		Sama_2112	0.35	-1.0
2,555,023	-		Sama_2112	0.35	-2.2
2,555,023	-		Sama_2112	0.35	-1.1
2,555,084	-		Sama_2112	0.42	+1.4
2,555,134	-		Sama_2112	0.48	-0.6
2,555,160	-		Sama_2112	0.51	-0.0
2,555,226	+		Sama_2112	0.58	+2.4
2,555,256	-		Sama_2112	0.62	-0.1
2,555,277	+		Sama_2112	0.64	+0.2
2,555,278	-		Sama_2112	0.64	+0.8
2,555,278	-		Sama_2112	0.64	-0.4
2,555,301	+		Sama_2112	0.67	+1.5
2,555,302	-		Sama_2112	0.67	+0.3
2,555,302	-		Sama_2112	0.67	+0.8
2,555,302	-		Sama_2112	0.67	+0.4
2,555,362	+		Sama_2112	0.74	+0.9
2,555,362	+		Sama_2112	0.74	+1.1
2,555,362	+		Sama_2112	0.74	-0.2
2,555,362	+		Sama_2112	0.74	+1.1
2,555,362	+		Sama_2112	0.74	-1.0
2,555,363	-		Sama_2112	0.74	-2.1
2,555,363	-		Sama_2112	0.74	+0.4
2,555,363	-		Sama_2112	0.74	+1.0
2,555,363	-		Sama_2112	0.74	-1.8
2,555,363	-		Sama_2112	0.74	-0.8
2,555,363	-		Sama_2112	0.74	+0.4
2,555,473	+		Sama_2112	0.86	+0.1
2,555,474	-		Sama_2112	0.86	+1.3
2,555,474	-		Sama_2112	0.86	+0.7
2,555,657	+				+0.6
2,555,658	-				+0.1
2,555,685	+				+0.1
2,555,686	-				-0.1
2,555,686	-				-0.7
2,555,690	+				+0.0
2,555,690	+				+0.4
2,555,690	+				+0.1
2,555,733	+				-1.4
2,555,734	-				-0.4
2,555,773	+		Sama_2113	0.12	-0.5
2,555,807	-		Sama_2113	0.19	-0.0
2,555,854	+		Sama_2113	0.29	+1.5
2,555,855	-		Sama_2113	0.29	-2.0
2,555,896	+		Sama_2113	0.37	-0.4
2,555,896	+		Sama_2113	0.37	+0.1
2,555,896	+		Sama_2113	0.37	+0.7
2,555,897	-		Sama_2113	0.37	+0.6
2,555,969	+		Sama_2113	0.52	+0.1
2,555,969	+		Sama_2113	0.52	+0.7
2,555,973	-		Sama_2113	0.53	+2.1
2,555,980	+		Sama_2113	0.54	-2.0
2,555,981	-		Sama_2113	0.54	+1.6
2,556,034	+		Sama_2113	0.65	-0.1
2,556,035	-		Sama_2113	0.65	-1.3
2,556,036	+		Sama_2113	0.65	-0.5
2,556,036	+		Sama_2113	0.65	+1.2
2,556,055	+		Sama_2113	0.69	+0.1
2,556,055	+		Sama_2113	0.69	+0.7
2,556,056	-		Sama_2113	0.69	-0.6
2,556,056	-		Sama_2113	0.69	-0.4
2,556,110	+		Sama_2113	0.80	+0.1
2,556,112	+		Sama_2113	0.81	-1.8
2,556,112	+		Sama_2113	0.81	+0.1
2,556,130	+		Sama_2113	0.84	-1.1
2,556,130	+		Sama_2113	0.84	+0.6
2,556,174	+				-0.1
2,556,174	+				+0.4
2,556,174	+				-1.2
2,556,211	+				+0.1
2,556,212	-				-0.3
2,556,236	-				-0.7
2,556,263	+				+1.7
2,556,263	+				+0.8
2,556,264	-				+0.3
2,556,389	+		Sama_2114	0.31	+0.3
2,556,401	+		Sama_2114	0.33	-0.8
2,556,402	-		Sama_2114	0.33	+0.3
2,556,402	-		Sama_2114	0.33	+0.5
2,556,404	+		Sama_2114	0.34	-0.3
2,556,405	-		Sama_2114	0.34	+0.3
2,556,405	-		Sama_2114	0.34	-0.3
2,556,410	+		Sama_2114	0.35	-0.1
2,556,431	+		Sama_2114	0.38	-0.4
2,556,434	+		Sama_2114	0.39	+0.4
2,556,435	-		Sama_2114	0.39	-1.1
2,556,472	+		Sama_2114	0.46	+0.6
2,556,473	-		Sama_2114	0.46	+0.0
2,556,479	+		Sama_2114	0.47	-0.3
2,556,535	+		Sama_2114	0.57	-0.1
2,556,535	+		Sama_2114	0.57	+0.3
2,556,535	+		Sama_2114	0.57	-1.0
2,556,535	+		Sama_2114	0.57	-0.4
2,556,536	-		Sama_2114	0.57	+1.1
2,556,536	-		Sama_2114	0.57	-1.3
2,556,536	-		Sama_2114	0.57	-0.4
2,556,545	-		Sama_2114	0.59	+0.2
2,556,554	+		Sama_2114	0.60	-0.6
2,556,602	-		Sama_2114	0.69	-1.8
2,556,632	+		Sama_2114	0.74	+0.7
2,556,641	+		Sama_2114	0.76	-0.2
2,556,682	+		Sama_2114	0.83	+0.2
2,556,775	-				-0.1
2,556,820	+				-0.8
2,556,820	+				+0.8
2,556,908	+				-0.2
2,556,908	+				+1.1
2,556,908	+				+0.6
2,556,950	+				-0.6
2,556,951	-				-0.7
2,556,951	-				+1.8
2,556,956	+				-0.3
2,556,956	+				-0.8
2,557,017	+				+0.9
2,557,017	+				+1.0
2,557,017	+				+0.8
2,557,018	-				-0.7
2,557,134	+		Sama_2115	0.19	-0.6
2,557,134	+		Sama_2115	0.19	-0.3
2,557,166	-		Sama_2115	0.23	+0.4