Strain Fitness in Shewanella amazonensis SB2B around Sama_1174

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
1,432,685	+				+0.3
1,432,686	-				-0.1
1,432,686	-				-0.3
1,432,686	-				-0.1
1,432,747	+				+0.6
1,432,839	+				-0.6
1,432,839	+				-1.7
1,432,839	+				-0.6
1,432,839	+				-0.0
1,432,839	+				-2.1
1,432,839	+				+0.4
1,432,839	+				+0.2
1,432,840	-				-0.0
1,432,840	-				-0.1
1,432,840	-				-0.0
1,432,840	-				-0.4
1,432,840	-				+0.5
1,432,840	-				+0.1
1,432,840	-				-0.8
1,432,894	-				-0.8
1,432,912	+				-0.1
1,432,912	+				-0.6
1,432,916	+				+0.1
1,432,916	+				+0.3
1,432,916	+				-0.6
1,433,012	-				+0.3
1,433,012	-				-0.1
1,433,057	+		Sama_1173	0.10	+0.9
1,433,057	+		Sama_1173	0.10	-0.4
1,433,058	-		Sama_1173	0.10	+0.4
1,433,058	-		Sama_1173	0.10	-0.2
1,433,068	+		Sama_1173	0.12	+1.1
1,433,071	-		Sama_1173	0.12	-0.5
1,433,071	-		Sama_1173	0.12	+1.2
1,433,071	-		Sama_1173	0.12	+1.1
1,433,095	-		Sama_1173	0.17	+0.3
1,433,128	+		Sama_1173	0.22	+1.1
1,433,128	+		Sama_1173	0.22	+0.3
1,433,128	+		Sama_1173	0.22	+0.5
1,433,129	-		Sama_1173	0.22	+2.2
1,433,129	-		Sama_1173	0.22	-0.6
1,433,129	-		Sama_1173	0.22	+1.9
1,433,129	-		Sama_1173	0.22	+1.4
1,433,129	-		Sama_1173	0.22	+0.1
1,433,313	+		Sama_1173	0.54	+0.1
1,433,313	+		Sama_1173	0.54	+0.7
1,433,369	+		Sama_1173	0.64	+0.1
1,433,370	-		Sama_1173	0.64	+0.3
1,433,374	-		Sama_1173	0.65	+0.7
1,433,387	-		Sama_1173	0.67	+1.0
1,433,387	-		Sama_1173	0.67	-0.2
1,433,387	-		Sama_1173	0.67	-1.4
1,433,407	-		Sama_1173	0.70	+0.9
1,433,530	+				+0.1
1,433,531	-				-0.1
1,433,583	+				-0.8
1,433,630	-				+1.4
1,433,630	-				-0.1
1,433,633	+				+0.6
1,433,640	+				-0.9
1,433,641	-				+0.1
1,433,654	+				+0.4
1,433,654	+				-0.3
1,433,654	+				+0.2
1,433,654	+				+0.0
1,433,658	+				-0.2
1,433,658	+				-0.7
1,433,659	-				+0.4
1,433,692	+				-1.0
1,433,716	+				+0.4
1,433,717	-				+0.4
1,433,731	+				+0.0
1,433,732	-				+0.0
1,433,732	-				+0.3
1,433,753	+				-0.4
1,433,754	-				+0.6
1,433,922	+		Sama_1174	0.20	+0.1
1,433,923	-		Sama_1174	0.21	-1.5
1,433,923	-		Sama_1174	0.21	-0.6
1,433,923	-		Sama_1174	0.21	-0.5
1,433,923	-		Sama_1174	0.21	-1.3
1,434,042	+		Sama_1174	0.29	-0.7
1,434,042	+		Sama_1174	0.29	+0.4
1,434,043	-		Sama_1174	0.29	-0.4
1,434,043	-		Sama_1174	0.29	-1.3
1,434,151	+		Sama_1174	0.37	+0.5
1,434,152	-		Sama_1174	0.37	+0.7
1,434,152	-		Sama_1174	0.37	-0.9
1,434,214	+		Sama_1174	0.42	-1.2
1,434,214	+		Sama_1174	0.42	+0.1
1,434,214	+		Sama_1174	0.42	-0.2
1,434,214	+		Sama_1174	0.42	+0.2
1,434,214	+		Sama_1174	0.42	+0.1
1,434,214	+		Sama_1174	0.42	-0.2
1,434,214	+		Sama_1174	0.42	+1.0
1,434,214	+		Sama_1174	0.42	-0.4
1,434,214	+		Sama_1174	0.42	+0.4
1,434,215	-		Sama_1174	0.42	-1.2
1,434,215	-		Sama_1174	0.42	+0.5
1,434,215	-		Sama_1174	0.42	-0.6
1,434,215	-		Sama_1174	0.42	-1.2
1,434,215	-		Sama_1174	0.42	+0.2
1,434,215	-		Sama_1174	0.42	-0.0
1,434,215	-		Sama_1174	0.42	-0.1
1,434,215	-		Sama_1174	0.42	+0.7
1,434,251	-		Sama_1174	0.45	-0.5
1,434,271	+		Sama_1174	0.46	-0.4
1,434,271	+		Sama_1174	0.46	-1.0
1,434,271	+		Sama_1174	0.46	-0.1
1,434,271	+		Sama_1174	0.46	+0.3
1,434,272	-		Sama_1174	0.46	+0.4
1,434,272	-		Sama_1174	0.46	+0.2
1,434,272	-		Sama_1174	0.46	-0.3
1,434,272	-		Sama_1174	0.46	+0.3
1,434,310	-		Sama_1174	0.49	+0.7
1,434,369	-		Sama_1174	0.53	+0.6
1,434,435	+		Sama_1174	0.58	+0.5
1,434,483	+		Sama_1174	0.61	+0.6
1,434,483	+		Sama_1174	0.61	+0.2
1,434,484	-		Sama_1174	0.62	-1.3
1,434,601	-		Sama_1174	0.70	+0.2
1,434,626	+		Sama_1174	0.72	+0.1
1,434,626	+		Sama_1174	0.72	-0.7
1,434,626	+		Sama_1174	0.72	-0.0
1,434,803	-		Sama_1174	0.85	-2.1
1,434,803	-		Sama_1174	0.85	+0.6
1,434,809	+		Sama_1174	0.85	+0.4
1,434,810	-		Sama_1174	0.85	-1.2
1,434,810	-		Sama_1174	0.85	-2.2
1,434,841	+		Sama_1174	0.88	-2.0
1,434,841	+		Sama_1174	0.88	+0.2
1,434,842	-		Sama_1174	0.88	+0.9
1,434,870	+		Sama_1174	0.90	+0.1
1,434,870	+		Sama_1174	0.90	+0.8
1,434,870	+		Sama_1174	0.90	-0.5
1,434,870	+		Sama_1174	0.90	+0.6
1,434,870	+		Sama_1174	0.90	+1.0
1,434,870	+		Sama_1174	0.90	-0.1
1,434,871	-		Sama_1174	0.90	-1.1
1,434,874	+				+0.5
1,434,874	+				-0.1
1,434,874	+				-0.0
1,434,874	+				+0.4
1,434,874	+				+1.6
1,434,875	-				-0.3
1,434,875	-				-1.0
1,434,875	-				-0.8
1,434,875	-				+1.1
1,434,875	-				+0.0
1,434,875	-				+0.3
1,434,875	-				+1.3
1,434,967	+				-1.4
1,434,967	+				-1.6
1,434,968	-				-0.5
1,434,968	-				+0.3
1,434,980	+				-1.6
1,435,009	+				-2.2
1,435,010	-				-0.0
1,435,117	+				+1.2
1,435,175	+				+1.0
1,435,176	-				-1.7
1,435,207	+				-1.7
1,435,207	+				-2.3
1,435,207	+				+0.8
1,435,314	+				-0.8
1,435,314	+				-1.7
1,435,315	-				-2.3
1,435,316	+				-0.2
1,435,316	+				-0.2
1,435,316	+				-0.1
1,435,316	+				-0.0
1,435,316	+				-0.0
1,435,317	-				-0.0
1,435,317	-				-0.8
1,435,360	+				+0.3
1,435,361	-				-1.1
1,435,361	-				+0.3
1,435,361	-				-0.9
1,435,361	-				+1.4
1,435,361	-				-1.4
1,435,361	-				-1.2
1,435,362	+				-0.4
1,435,362	+				+2.5
1,435,363	-				-0.5
1,435,363	-				-0.2
1,435,376	+				-0.6
1,435,376	+				-2.1
1,435,376	+				-0.6
1,435,376	+				-0.3
1,435,376	+				+0.8
1,435,376	+				-0.0
1,435,376	+				+1.4
1,435,377	-				-1.1
1,435,377	-				-0.7
1,435,377	-				+0.2
1,435,384	+				-1.4
1,435,384	+				+0.3
1,435,384	+				+1.0
1,435,385	-				-0.3
1,435,417	+				+1.9
1,435,418	-				+1.4
1,435,517	+				+0.3
1,435,517	+				+0.6
1,435,517	+				+0.1
1,435,518	-				-0.3
1,435,518	-				-0.4
1,435,518	-				+0.7
1,435,549	+				-2.5
1,435,582	+		Sama_1175	0.11	-0.2
1,435,583	-		Sama_1175	0.11	-1.0
1,435,617	-		Sama_1175	0.13	+0.1
1,435,617	-		Sama_1175	0.13	-0.5
1,435,622	+		Sama_1175	0.13	-0.6
1,435,622	+		Sama_1175	0.13	-1.7
1,435,622	+		Sama_1175	0.13	-0.6
1,435,622	+		Sama_1175	0.13	-0.2
1,435,622	+		Sama_1175	0.13	-0.7
1,435,622	+		Sama_1175	0.13	+0.4
1,435,622	+		Sama_1175	0.13	+0.4
1,435,623	-		Sama_1175	0.13	-0.8
1,435,623	-		Sama_1175	0.13	+0.1
1,435,623	-		Sama_1175	0.13	-0.2
1,435,624	+		Sama_1175	0.13	+1.2
1,435,624	+		Sama_1175	0.13	-0.7
1,435,624	+		Sama_1175	0.13	-1.0
1,435,624	+		Sama_1175	0.13	+0.4
1,435,625	-		Sama_1175	0.13	-1.0
1,435,635	+		Sama_1175	0.14	+1.6
1,435,666	-		Sama_1175	0.15	+0.0
1,435,699	+		Sama_1175	0.17	+0.8
1,435,699	+		Sama_1175	0.17	+0.4
1,435,699	+		Sama_1175	0.17	+2.1
1,435,700	-		Sama_1175	0.17	+0.7
1,435,700	-		Sama_1175	0.17	-0.5
1,435,700	-		Sama_1175	0.17	+0.3
1,435,710	+		Sama_1175	0.18	+1.1
1,435,710	+		Sama_1175	0.18	-0.1
1,435,727	-		Sama_1175	0.18	+0.1
1,435,740	+		Sama_1175	0.19	-0.4
1,435,768	+		Sama_1175	0.20	+0.3
1,435,768	+		Sama_1175	0.20	-1.3
1,435,805	+		Sama_1175	0.22	-0.5
1,435,805	+		Sama_1175	0.22	+1.9
1,435,805	+		Sama_1175	0.22	-1.3
1,435,805	+		Sama_1175	0.22	-0.2
1,435,806	-		Sama_1175	0.22	+1.0
1,435,806	-		Sama_1175	0.22	-0.7
1,435,806	-		Sama_1175	0.22	-0.4
1,435,806	-		Sama_1175	0.22	-1.9
1,435,806	-		Sama_1175	0.22	+0.7
1,435,806	-		Sama_1175	0.22	-1.3
1,435,806	-		Sama_1175	0.22	+0.1
1,435,806	-		Sama_1175	0.22	+0.6
1,435,833	-		Sama_1175	0.24	+0.5
1,435,833	-		Sama_1175	0.24	-1.1
1,435,849	+		Sama_1175	0.25	+1.4
1,435,849	+		Sama_1175	0.25	-0.2
1,435,850	-		Sama_1175	0.25	+0.5
1,435,850	-		Sama_1175	0.25	-0.1
1,435,850	-		Sama_1175	0.25	-0.3
1,435,850	-		Sama_1175	0.25	-0.6
1,435,900	+		Sama_1175	0.27	+0.2
1,435,900	+		Sama_1175	0.27	+0.6
1,435,901	-		Sama_1175	0.27	+0.6
1,436,008	+		Sama_1175	0.33	+0.2