Strain Fitness in Shewanella amazonensis SB2B around Sama_0897

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
1,084,682	+		Sama_0896	0.21	+0.4
1,084,682	+		Sama_0896	0.21	+1.3
1,084,683	-		Sama_0896	0.21	-1.5
1,084,684	+		Sama_0896	0.21	+0.5
1,084,684	+		Sama_0896	0.21	-0.2
1,084,684	+		Sama_0896	0.21	+0.3
1,084,684	+		Sama_0896	0.21	+0.6
1,084,684	+		Sama_0896	0.21	+0.2
1,084,684	+		Sama_0896	0.21	+0.9
1,084,684	+		Sama_0896	0.21	-1.6
1,084,684	+		Sama_0896	0.21	+0.7
1,084,684	+		Sama_0896	0.21	-0.4
1,084,684	+		Sama_0896	0.21	+0.4
1,084,685	-		Sama_0896	0.21	-0.8
1,084,685	-		Sama_0896	0.21	-0.1
1,084,764	-		Sama_0896	0.28	-0.4
1,084,764	-		Sama_0896	0.28	+0.6
1,084,774	+		Sama_0896	0.29	+0.7
1,084,825	+		Sama_0896	0.34	+1.6
1,084,825	+		Sama_0896	0.34	-0.6
1,084,837	+		Sama_0896	0.35	+0.9
1,084,838	-		Sama_0896	0.35	+0.2
1,084,853	+		Sama_0896	0.37	-1.0
1,084,863	+		Sama_0896	0.38	-0.0
1,084,864	-		Sama_0896	0.38	-1.9
1,084,897	+		Sama_0896	0.41	-0.9
1,084,898	-		Sama_0896	0.41	+0.4
1,084,977	+		Sama_0896	0.48	+0.8
1,085,033	+		Sama_0896	0.54	-0.1
1,085,037	+		Sama_0896	0.54	+0.8
1,085,037	+		Sama_0896	0.54	+0.5
1,085,037	+		Sama_0896	0.54	+0.5
1,085,037	+		Sama_0896	0.54	-0.8
1,085,050	+		Sama_0896	0.55	-0.3
1,085,050	+		Sama_0896	0.55	+0.4
1,085,050	+		Sama_0896	0.55	+0.1
1,085,050	+		Sama_0896	0.55	+0.1
1,085,050	+		Sama_0896	0.55	-0.2
1,085,051	-		Sama_0896	0.55	+1.1
1,085,051	-		Sama_0896	0.55	+1.6
1,085,069	+		Sama_0896	0.57	-1.5
1,085,069	+		Sama_0896	0.57	-1.8
1,085,147	+		Sama_0896	0.64	+2.1
1,085,147	+		Sama_0896	0.64	+1.3
1,085,147	+		Sama_0896	0.64	-0.5
1,085,147	+		Sama_0896	0.64	+0.1
1,085,147	+		Sama_0896	0.64	+0.5
1,085,147	+		Sama_0896	0.64	-0.6
1,085,147	+		Sama_0896	0.64	-0.7
1,085,147	+		Sama_0896	0.64	+0.4
1,085,147	+		Sama_0896	0.64	-0.5
1,085,147	+		Sama_0896	0.64	-0.9
1,085,147	+		Sama_0896	0.64	-0.1
1,085,147	+		Sama_0896	0.64	-1.5
1,085,147	+		Sama_0896	0.64	-0.1
1,085,147	+		Sama_0896	0.64	-0.6
1,085,147	+		Sama_0896	0.64	-0.1
1,085,147	+		Sama_0896	0.64	-0.6
1,085,147	+		Sama_0896	0.64	-0.1
1,085,147	+		Sama_0896	0.64	+0.6
1,085,147	+		Sama_0896	0.64	-1.9
1,085,147	+		Sama_0896	0.64	-0.3
1,085,147	+		Sama_0896	0.64	-0.1
1,085,147	+		Sama_0896	0.64	+0.2
1,085,147	+		Sama_0896	0.64	-0.4
1,085,148	-		Sama_0896	0.64	+1.2
1,085,148	-		Sama_0896	0.64	+0.5
1,085,148	-		Sama_0896	0.64	+0.4
1,085,148	-		Sama_0896	0.64	-1.8
1,085,148	-		Sama_0896	0.64	-1.4
1,085,148	-		Sama_0896	0.64	+0.1
1,085,148	-		Sama_0896	0.64	-0.8
1,085,148	-		Sama_0896	0.64	-2.3
1,085,148	-		Sama_0896	0.64	-1.2
1,085,148	-		Sama_0896	0.64	-0.1
1,085,148	-		Sama_0896	0.64	+0.7
1,085,148	-		Sama_0896	0.64	+0.3
1,085,148	-		Sama_0896	0.64	+0.0
1,085,148	-		Sama_0896	0.64	-0.5
1,085,148	-		Sama_0896	0.64	+0.2
1,085,148	-		Sama_0896	0.64	+0.6
1,085,168	+		Sama_0896	0.66	+1.3
1,085,168	+		Sama_0896	0.66	-0.0
1,085,168	+		Sama_0896	0.66	+0.2
1,085,168	+		Sama_0896	0.66	-0.6
1,085,168	+		Sama_0896	0.66	-0.6
1,085,168	+		Sama_0896	0.66	-0.2
1,085,169	-		Sama_0896	0.66	-0.9
1,085,169	-		Sama_0896	0.66	+1.0
1,085,170	+		Sama_0896	0.66	+0.1
1,085,170	+		Sama_0896	0.66	-0.3
1,085,170	+		Sama_0896	0.66	+0.0
1,085,171	-		Sama_0896	0.66	-0.1
1,085,182	-		Sama_0896	0.67	+0.2
1,085,281	+		Sama_0896	0.77	-0.6
1,085,281	+		Sama_0896	0.77	+0.4
1,085,299	+		Sama_0896	0.78	-0.1
1,085,299	+		Sama_0896	0.78	+0.1
1,085,299	+		Sama_0896	0.78	-0.7
1,085,299	+		Sama_0896	0.78	-1.3
1,085,299	+		Sama_0896	0.78	-0.4
1,085,300	-		Sama_0896	0.78	-0.2
1,085,353	+		Sama_0896	0.83	+0.7
1,085,354	-		Sama_0896	0.83	+0.7
1,085,358	+		Sama_0896	0.84	+0.4
1,085,358	+		Sama_0896	0.84	+0.7
1,085,358	+		Sama_0896	0.84	-0.4
1,085,359	-		Sama_0896	0.84	-2.4
1,085,359	-		Sama_0896	0.84	+0.3
1,085,359	-		Sama_0896	0.84	-0.7
1,085,359	-		Sama_0896	0.84	+0.2
1,085,401	+		Sama_0896	0.88	-0.5
1,085,476	+				-0.8
1,085,477	-				-0.4
1,085,477	-				-1.7
1,085,477	-				-2.4
1,085,528	+				-1.6
1,085,528	+				-1.0
1,085,537	+				+0.5
1,085,537	+				-1.4
1,085,548	+				-0.3
1,085,548	+				-0.9
1,085,549	-				+0.1
1,085,598	+				+0.0
1,085,598	+				+0.2
1,085,604	+				+0.5
1,085,725	+		Sama_0897	0.13	-1.2
1,085,725	+		Sama_0897	0.13	-0.2
1,085,738	+		Sama_0897	0.16	-0.5
1,085,819	-		Sama_0897	0.38	-0.1
1,085,845	+		Sama_0897	0.45	-0.2
1,085,845	+		Sama_0897	0.45	-1.4
1,085,845	+		Sama_0897	0.45	-0.8
1,085,846	-		Sama_0897	0.45	+0.5
1,085,874	+		Sama_0897	0.52	-1.9
1,085,898	-		Sama_0897	0.59	+0.0
1,085,898	-		Sama_0897	0.59	+0.3
1,086,005	-		Sama_0897	0.87	+0.8
1,086,005	-		Sama_0897	0.87	+0.1
1,086,040	+				-0.6
1,086,040	+				+0.5
1,086,040	+				+2.0
1,086,040	+				-0.2
1,086,050	+				+0.3
1,086,114	+				+1.0
1,086,114	+				+0.7
1,086,115	-				+1.2
1,086,115	-				+0.1
1,086,115	-				+0.5
1,086,115	-				+0.1
1,086,118	-				+0.6
1,086,124	+				+1.5
1,086,157	+				-3.5
1,086,158	-				-2.4
1,086,262	-				-0.6
1,086,265	+				-3.7
1,086,265	+				-2.4
1,086,265	+				-1.8
1,086,265	+				-1.3
1,086,265	+				-3.2
1,086,265	+				-3.6
1,086,265	+				-3.0
1,086,266	-				-2.4
1,086,266	-				-1.9
1,086,266	-				-2.3
1,086,266	-				-1.5
1,086,266	-				-1.4
1,086,266	-				-4.1
1,086,266	-				-0.4
1,086,266	-				-2.2
1,086,266	-				-2.6
1,086,325	-		Sama_0898	0.10	-1.1
1,086,325	-		Sama_0898	0.10	-0.9
1,086,354	-		Sama_0898	0.12	-0.5
1,086,441	-		Sama_0898	0.16	-1.1
1,086,452	+		Sama_0898	0.17	-4.0
1,086,452	+		Sama_0898	0.17	-1.6
1,086,452	+		Sama_0898	0.17	+0.2
1,086,453	-		Sama_0898	0.17	-2.1
1,086,453	-		Sama_0898	0.17	-2.5
1,086,453	-		Sama_0898	0.17	-3.5
1,086,453	-		Sama_0898	0.17	-2.4
1,086,474	+		Sama_0898	0.18	-3.4
1,086,474	+		Sama_0898	0.18	-3.0
1,086,475	-		Sama_0898	0.18	-1.8
1,086,475	-		Sama_0898	0.18	-2.8
1,086,475	-		Sama_0898	0.18	+0.2
1,086,475	-		Sama_0898	0.18	-0.9
1,086,485	+		Sama_0898	0.18	-2.3
1,086,485	+		Sama_0898	0.18	-0.9
1,086,485	+		Sama_0898	0.18	-1.2
1,086,486	-		Sama_0898	0.18	+0.1
1,086,540	-		Sama_0898	0.21	-4.0
1,086,709	-		Sama_0898	0.30	-1.7
1,086,716	+		Sama_0898	0.30	-1.2
1,086,743	+		Sama_0898	0.31	-2.4
1,086,743	+		Sama_0898	0.31	-0.9
1,086,743	+		Sama_0898	0.31	-3.0
1,086,743	+		Sama_0898	0.31	-3.5
1,086,750	+		Sama_0898	0.32	-1.6
1,086,751	-		Sama_0898	0.32	-1.2
1,086,751	-		Sama_0898	0.32	-2.5
1,086,810	+		Sama_0898	0.35	-5.0
1,086,810	+		Sama_0898	0.35	-3.8
1,086,810	+		Sama_0898	0.35	-2.5
1,086,811	-		Sama_0898	0.35	-0.8
1,086,832	+		Sama_0898	0.36	-0.7
1,086,945	+		Sama_0898	0.42	-2.7
1,086,946	-		Sama_0898	0.42	-0.4
1,086,960	+		Sama_0898	0.42	-2.3
1,086,960	+		Sama_0898	0.42	-2.0
1,086,961	-		Sama_0898	0.42	-1.3
1,086,961	-		Sama_0898	0.42	-2.5
1,086,976	+		Sama_0898	0.43	-3.5
1,086,976	+		Sama_0898	0.43	-3.2
1,086,976	+		Sama_0898	0.43	-2.4
1,086,977	-		Sama_0898	0.43	-3.7
1,086,992	+		Sama_0898	0.44	-2.5
1,086,992	+		Sama_0898	0.44	-3.3
1,086,992	+		Sama_0898	0.44	-3.4
1,086,992	+		Sama_0898	0.44	-2.1
1,086,992	+		Sama_0898	0.44	-3.8
1,086,995	+		Sama_0898	0.44	-3.7
1,086,995	+		Sama_0898	0.44	-3.2
1,086,996	-		Sama_0898	0.44	-3.0