Strain Fitness in Shewanella amazonensis SB2B around Sama_0781

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0779 and Sama_0780 are separated by 71 nucleotidesSama_0780 and Sama_0781 are separated by 158 nucleotidesSama_0781 and Sama_0782 are separated by 302 nucleotides Sama_0779: Sama_0779 - glutamyl-tRNA synthetase domain-containing protein (RefSeq), at 961,689 to 962,561 _0779 Sama_0780: Sama_0780 - TraR/DksA family transcriptional regulator (RefSeq), at 962,633 to 963,076 _0780 Sama_0781: Sama_0781 - sugar fermentation stimulation protein A (RefSeq), at 963,235 to 963,948 _0781 Sama_0782: Sama_0782 - aminopeptidase B (RefSeq), at 964,251 to 965,534 _0782 Position (kb) 963 964Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.308 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.332 kb on + strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.333 kb on - strand, within Sama_0779at 962.421 kb on + strand, within Sama_0779at 962.422 kb on - strand, within Sama_0779at 962.554 kb on + strandat 962.554 kb on + strandat 962.554 kb on + strandat 962.554 kb on + strandat 962.555 kb on - strandat 962.555 kb on - strandat 962.555 kb on - strandat 962.555 kb on - strandat 962.555 kb on - strandat 962.809 kb on + strand, within Sama_0780at 962.996 kb on - strand, within Sama_0780at 962.997 kb on + strand, within Sama_0780at 962.997 kb on + strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 962.998 kb on - strand, within Sama_0780at 963.030 kb on - strand, within Sama_0780at 963.076 kb on + strandat 963.077 kb on - strandat 963.077 kb on - strandat 963.117 kb on + strandat 963.117 kb on + strandat 963.118 kb on - strandat 963.129 kb on + strandat 963.133 kb on + strandat 963.134 kb on - strandat 963.134 kb on - strandat 963.134 kb on - strandat 963.134 kb on - strandat 963.134 kb on - strandat 963.166 kb on + strandat 963.166 kb on + strandat 963.167 kb on - strandat 963.182 kb on - strandat 963.271 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.297 kb on + strandat 963.298 kb on - strandat 963.298 kb on - strandat 963.298 kb on - strandat 963.298 kb on - strandat 963.298 kb on - strandat 963.306 kb on - strandat 963.306 kb on - strandat 963.357 kb on - strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.367 kb on + strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.368 kb on - strand, within Sama_0781at 963.370 kb on - strand, within Sama_0781at 963.385 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.547 kb on + strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.548 kb on - strand, within Sama_0781at 963.549 kb on + strand, within Sama_0781at 963.549 kb on + strand, within Sama_0781at 963.549 kb on + strand, within Sama_0781at 963.549 kb on + strand, within Sama_0781at 963.550 kb on - strand, within Sama_0781at 963.551 kb on + strand, within Sama_0781at 963.551 kb on + strand, within Sama_0781at 963.551 kb on + strand, within Sama_0781at 963.552 kb on - strand, within Sama_0781at 963.583 kb on + strand, within Sama_0781at 963.584 kb on - strand, within Sama_0781at 963.611 kb on + strand, within Sama_0781at 963.611 kb on + strand, within Sama_0781at 963.611 kb on + strand, within Sama_0781at 963.611 kb on + strand, within Sama_0781at 963.612 kb on - strand, within Sama_0781at 963.612 kb on - strand, within Sama_0781at 963.612 kb on - strand, within Sama_0781at 963.612 kb on - strand, within Sama_0781at 963.638 kb on + strand, within Sama_0781at 963.655 kb on + strand, within Sama_0781at 963.655 kb on + strand, within Sama_0781at 963.708 kb on + strand, within Sama_0781at 963.761 kb on + strand, within Sama_0781at 963.761 kb on + strand, within Sama_0781at 963.762 kb on - strand, within Sama_0781at 963.762 kb on - strand, within Sama_0781at 963.812 kb on + strand, within Sama_0781at 963.813 kb on - strand, within Sama_0781at 963.900 kb on + strandat 963.901 kb on - strandat 963.901 kb on - strandat 963.902 kb on + strandat 963.902 kb on + strandat 963.903 kb on - strandat 963.903 kb on - strandat 963.942 kb on - strandat 963.942 kb on - strandat 963.942 kb on - strandat 964.052 kb on - strandat 964.056 kb on + strandat 964.056 kb on + strandat 964.057 kb on - strandat 964.078 kb on + strandat 964.079 kb on - strandat 964.079 kb on - strandat 964.142 kb on + strandat 964.165 kb on - strandat 964.178 kb on - strandat 964.270 kb on + strandat 964.270 kb on + strandat 964.270 kb on + strandat 964.451 kb on + strand, within Sama_0782at 964.452 kb on - strand, within Sama_0782at 964.553 kb on + strand, within Sama_0782at 964.554 kb on - strand, within Sama_0782at 964.586 kb on + strand, within Sama_0782at 964.586 kb on + strand, within Sama_0782at 964.646 kb on + strand, within Sama_0782at 964.647 kb on - strand, within Sama_0782at 964.680 kb on - strand, within Sama_0782at 964.680 kb on - strand, within Sama_0782at 964.699 kb on + strand, within Sama_0782at 964.699 kb on + strand, within Sama_0782at 964.700 kb on - strand, within Sama_0782at 964.700 kb on - strand, within Sama_0782at 964.700 kb on - strand, within Sama_0782at 964.700 kb on - strand, within Sama_0782at 964.722 kb on - strand, within Sama_0782at 964.722 kb on - strand, within Sama_0782at 964.776 kb on + strand, within Sama_0782at 964.776 kb on + strand, within Sama_0782at 964.819 kb on + strand, within Sama_0782at 964.819 kb on + strand, within Sama_0782at 964.820 kb on - strand, within Sama_0782at 964.820 kb on - strand, within Sama_0782at 964.820 kb on - strand, within Sama_0782at 964.823 kb on + strand, within Sama_0782at 964.823 kb on + strand, within Sama_0782at 964.823 kb on + strand, within Sama_0782at 964.823 kb on + strand, within Sama_0782at 964.824 kb on - strand, within Sama_0782at 964.824 kb on - strand, within Sama_0782at 964.824 kb on - strand, within Sama_0782at 964.829 kb on + strand, within Sama_0782at 964.829 kb on + strand, within Sama_0782at 964.829 kb on + strand, within Sama_0782at 964.830 kb on - strand, within Sama_0782at 964.830 kb on - strand, within Sama_0782at 964.830 kb on - strand, within Sama_0782at 964.832 kb on + strand, within Sama_0782at 964.832 kb on + strand, within Sama_0782at 964.832 kb on + strand, within Sama_0782at 964.832 kb on + strand, within Sama_0782at 964.833 kb on - strand, within Sama_0782at 964.833 kb on - strand, within Sama_0782at 964.833 kb on - strand, within Sama_0782at 964.833 kb on - strand, within Sama_0782at 964.883 kb on + strand, within Sama_0782at 964.883 kb on + strand, within Sama_0782at 964.883 kb on + strand, within Sama_0782at 964.913 kb on + strand, within Sama_0782at 964.913 kb on + strand, within Sama_0782at 964.913 kb on + strand, within Sama_0782at 964.940 kb on + strand, within Sama_0782

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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962,308 + Sama_0779 0.71 -0.1
962,308 + Sama_0779 0.71 -1.3
962,308 + Sama_0779 0.71 -0.2
962,308 + Sama_0779 0.71 +0.4
962,308 + Sama_0779 0.71 +0.0
962,332 + Sama_0779 0.74 -0.2
962,332 + Sama_0779 0.74 -0.8
962,332 + Sama_0779 0.74 -2.7
962,332 + Sama_0779 0.74 +1.6
962,332 + Sama_0779 0.74 +0.1
962,332 + Sama_0779 0.74 -2.1
962,333 - Sama_0779 0.74 +0.1
962,333 - Sama_0779 0.74 +0.4
962,333 - Sama_0779 0.74 +0.8
962,333 - Sama_0779 0.74 -2.1
962,333 - Sama_0779 0.74 +0.1
962,333 - Sama_0779 0.74 +0.9
962,333 - Sama_0779 0.74 +0.7
962,421 + Sama_0779 0.84 -1.4
962,422 - Sama_0779 0.84 +0.0
962,554 + -0.7
962,554 + -0.9
962,554 + -1.1
962,554 + -1.2
962,555 - -0.3
962,555 - +0.3
962,555 - -0.2
962,555 - -0.2
962,555 - +1.4
962,809 + Sama_0780 0.40 -2.3
962,996 - Sama_0780 0.82 -1.9
962,997 + Sama_0780 0.82 -3.5
962,997 + Sama_0780 0.82 -1.8
962,998 - Sama_0780 0.82 -2.8
962,998 - Sama_0780 0.82 -2.0
962,998 - Sama_0780 0.82 -2.3
962,998 - Sama_0780 0.82 -3.5
962,998 - Sama_0780 0.82 -2.9
962,998 - Sama_0780 0.82 -1.4
962,998 - Sama_0780 0.82 -3.3
962,998 - Sama_0780 0.82 -3.8
963,030 - Sama_0780 0.89 -4.1
963,076 + -2.8
963,077 - -3.5
963,077 - -1.4
963,117 + -1.9
963,117 + -1.7
963,118 - -2.1
963,129 + -1.7
963,133 + -1.0
963,134 - +0.1
963,134 - -2.1
963,134 - -2.0
963,134 - -1.7
963,134 - -2.2
963,166 + +1.1
963,166 + +1.0
963,167 - +0.3
963,182 - -1.4
963,271 + +0.2
963,297 + +1.0
963,297 + +0.5
963,297 + -1.6
963,297 + +1.2
963,297 + +0.4
963,297 + +1.2
963,297 + -1.2
963,298 - +0.0
963,298 - +0.1
963,298 - +0.9
963,298 - -1.4
963,298 - -0.2
963,306 - +1.0
963,306 - +0.0
963,357 - Sama_0781 0.17 +0.4
963,367 + Sama_0781 0.18 +0.5
963,367 + Sama_0781 0.18 +1.3
963,367 + Sama_0781 0.18 +2.0
963,367 + Sama_0781 0.18 +1.1
963,367 + Sama_0781 0.18 +0.8
963,367 + Sama_0781 0.18 -0.7
963,367 + Sama_0781 0.18 -0.2
963,367 + Sama_0781 0.18 -0.4
963,367 + Sama_0781 0.18 +0.0
963,367 + Sama_0781 0.18 -0.5
963,367 + Sama_0781 0.18 -0.4
963,368 - Sama_0781 0.19 +0.5
963,368 - Sama_0781 0.19 +1.1
963,368 - Sama_0781 0.19 +0.1
963,368 - Sama_0781 0.19 -0.1
963,368 - Sama_0781 0.19 -1.2
963,368 - Sama_0781 0.19 +0.6
963,368 - Sama_0781 0.19 +0.1
963,368 - Sama_0781 0.19 +0.0
963,368 - Sama_0781 0.19 -1.4
963,368 - Sama_0781 0.19 +0.0
963,370 - Sama_0781 0.19 +0.3
963,385 + Sama_0781 0.21 +0.4
963,547 + Sama_0781 0.44 -0.6
963,547 + Sama_0781 0.44 -0.0
963,547 + Sama_0781 0.44 +1.4
963,547 + Sama_0781 0.44 +0.1
963,547 + Sama_0781 0.44 -0.8
963,547 + Sama_0781 0.44 -0.1
963,548 - Sama_0781 0.44 +0.2
963,548 - Sama_0781 0.44 +0.3
963,548 - Sama_0781 0.44 +0.2
963,548 - Sama_0781 0.44 +0.8
963,548 - Sama_0781 0.44 +1.0
963,548 - Sama_0781 0.44 +1.1
963,548 - Sama_0781 0.44 -1.0
963,548 - Sama_0781 0.44 +1.0
963,548 - Sama_0781 0.44 +0.4
963,548 - Sama_0781 0.44 -1.1
963,548 - Sama_0781 0.44 -0.1
963,548 - Sama_0781 0.44 +1.6
963,548 - Sama_0781 0.44 +0.8
963,549 + Sama_0781 0.44 +0.8
963,549 + Sama_0781 0.44 +0.3
963,549 + Sama_0781 0.44 +0.1
963,549 + Sama_0781 0.44 +0.1
963,550 - Sama_0781 0.44 +0.6
963,551 + Sama_0781 0.44 -0.1
963,551 + Sama_0781 0.44 +0.7
963,551 + Sama_0781 0.44 -2.1
963,552 - Sama_0781 0.44 +0.7
963,583 + Sama_0781 0.49 +0.4
963,584 - Sama_0781 0.49 +0.7
963,611 + Sama_0781 0.53 -0.1
963,611 + Sama_0781 0.53 -0.3
963,611 + Sama_0781 0.53 +0.3
963,611 + Sama_0781 0.53 -1.0
963,612 - Sama_0781 0.53 +1.4
963,612 - Sama_0781 0.53 +0.3
963,612 - Sama_0781 0.53 -0.4
963,612 - Sama_0781 0.53 +0.5
963,638 + Sama_0781 0.56 -0.1
963,655 + Sama_0781 0.59 +0.6
963,655 + Sama_0781 0.59 -0.2
963,708 + Sama_0781 0.66 +1.0
963,761 + Sama_0781 0.74 -0.5
963,761 + Sama_0781 0.74 -1.4
963,762 - Sama_0781 0.74 +1.3
963,762 - Sama_0781 0.74 +1.0
963,812 + Sama_0781 0.81 +0.7
963,813 - Sama_0781 0.81 +0.9
963,900 + -1.0
963,901 - +0.6
963,901 - +0.8
963,902 + -0.3
963,902 + +1.3
963,903 - +0.2
963,903 - +0.2
963,942 - +0.2
963,942 - -0.4
963,942 - -0.4
964,052 - +0.7
964,056 + -0.4
964,056 + +0.6
964,057 - +0.4
964,078 + +0.1
964,079 - -0.6
964,079 - -0.5
964,142 + +0.8
964,165 - +0.2
964,178 - +0.2
964,270 + +1.7
964,270 + -2.4
964,270 + -0.1
964,451 + Sama_0782 0.16 -0.0
964,452 - Sama_0782 0.16 +1.4
964,553 + Sama_0782 0.24 +0.0
964,554 - Sama_0782 0.24 -0.3
964,586 + Sama_0782 0.26 +1.3
964,586 + Sama_0782 0.26 +0.0
964,646 + Sama_0782 0.31 +0.2
964,647 - Sama_0782 0.31 -0.4
964,680 - Sama_0782 0.33 +0.0
964,680 - Sama_0782 0.33 +0.7
964,699 + Sama_0782 0.35 +0.8
964,699 + Sama_0782 0.35 +2.3
964,700 - Sama_0782 0.35 +0.2
964,700 - Sama_0782 0.35 +0.3
964,700 - Sama_0782 0.35 +1.2
964,700 - Sama_0782 0.35 +0.2
964,722 - Sama_0782 0.37 +0.2
964,722 - Sama_0782 0.37 +0.9
964,776 + Sama_0782 0.41 +0.6
964,776 + Sama_0782 0.41 +1.1
964,819 + Sama_0782 0.44 +0.5
964,819 + Sama_0782 0.44 -0.3
964,820 - Sama_0782 0.44 +1.0
964,820 - Sama_0782 0.44 +0.5
964,820 - Sama_0782 0.44 +0.3
964,823 + Sama_0782 0.45 -0.2
964,823 + Sama_0782 0.45 -0.7
964,823 + Sama_0782 0.45 +0.6
964,823 + Sama_0782 0.45 -0.1
964,824 - Sama_0782 0.45 +0.6
964,824 - Sama_0782 0.45 +0.2
964,824 - Sama_0782 0.45 -1.1
964,829 + Sama_0782 0.45 +0.2
964,829 + Sama_0782 0.45 -0.8
964,829 + Sama_0782 0.45 +0.4
964,830 - Sama_0782 0.45 +0.1
964,830 - Sama_0782 0.45 -1.8
964,830 - Sama_0782 0.45 +0.6
964,832 + Sama_0782 0.45 +0.1
964,832 + Sama_0782 0.45 +0.1
964,832 + Sama_0782 0.45 -0.4
964,832 + Sama_0782 0.45 -0.8
964,833 - Sama_0782 0.45 +0.8
964,833 - Sama_0782 0.45 -0.2
964,833 - Sama_0782 0.45 +0.6
964,833 - Sama_0782 0.45 -2.0
964,883 + Sama_0782 0.49 +0.2
964,883 + Sama_0782 0.49 +0.3
964,883 + Sama_0782 0.49 -0.9
964,913 + Sama_0782 0.52 +1.1
964,913 + Sama_0782 0.52 +0.3
964,913 + Sama_0782 0.52 -0.9
964,940 + Sama_0782 0.54 -0.5

Or see this region's nucleotide sequence