Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2732

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2730 and Dshi_2731 overlap by 1 nucleotidesDshi_2731 and Dshi_2732 are separated by 71 nucleotidesDshi_2732 and Dshi_2733 are separated by 112 nucleotides Dshi_2730: Dshi_2730 - FG-GAP repeat domain protein (RefSeq), at 2,892,698 to 2,893,456 _2730 Dshi_2731: Dshi_2731 - ferredoxin (RefSeq), at 2,893,456 to 2,893,779 _2731 Dshi_2732: Dshi_2732 - nucleic acid binding OB-fold tRNA/helicase-type (RefSeq), at 2,893,851 to 2,894,264 _2732 Dshi_2733: Dshi_2733 - protease Do (RefSeq), at 2,894,377 to 2,895,882 _2733 Position (kb) 2893 2894 2895Strain fitness (log2 ratio) -2 -1 0 1at 2892.861 kb on - strand, within Dshi_2730at 2893.016 kb on - strand, within Dshi_2730at 2893.019 kb on - strand, within Dshi_2730at 2893.031 kb on + strand, within Dshi_2730at 2893.145 kb on + strand, within Dshi_2730at 2893.248 kb on - strand, within Dshi_2730at 2893.955 kb on - strand, within Dshi_2732at 2894.150 kb on + strand, within Dshi_2732at 2894.253 kb on + strandat 2894.297 kb on - strandat 2894.564 kb on - strand, within Dshi_2733at 2894.688 kb on - strand, within Dshi_2733at 2894.760 kb on - strand, within Dshi_2733at 2894.785 kb on + strand, within Dshi_2733at 2894.792 kb on + strand, within Dshi_2733at 2894.837 kb on - strandat 2894.954 kb on - strand, within Dshi_2733at 2895.133 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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2,892,861 - Dshi_2730 0.21 +0.6
2,893,016 - Dshi_2730 0.42 -0.4
2,893,019 - Dshi_2730 0.42 -0.8
2,893,031 + Dshi_2730 0.44 +0.2
2,893,145 + Dshi_2730 0.59 -0.8
2,893,248 - Dshi_2730 0.72 -0.4
2,893,955 - Dshi_2732 0.25 -0.6
2,894,150 + Dshi_2732 0.72 -0.3
2,894,253 + +0.0
2,894,297 - -0.0
2,894,564 - Dshi_2733 0.12 -1.8
2,894,688 - Dshi_2733 0.21 +0.8
2,894,760 - Dshi_2733 0.25 -2.0
2,894,785 + Dshi_2733 0.27 +0.2
2,894,792 + Dshi_2733 0.28 -0.5
2,894,837 - +0.8
2,894,954 - Dshi_2733 0.38 -1.7
2,895,133 - +0.8

Or see this region's nucleotide sequence