Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2686

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2685 and Dshi_2686 are separated by 302 nucleotidesDshi_2686 and Dshi_2687 are separated by 226 nucleotidesDshi_2687 and Dshi_2688 are separated by 277 nucleotides Dshi_2685: Dshi_2685 - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq), at 2,845,670 to 2,846,659 _2685 Dshi_2686: Dshi_2686 - UspA domain protein (RefSeq), at 2,846,962 to 2,847,378 _2686 Dshi_2687: Dshi_2687 - pseudoazurin (RefSeq), at 2,847,605 to 2,848,090 _2687 Dshi_2688: Dshi_2688 - cytochrome bd ubiquinol oxidase subunit I (RefSeq), at 2,848,368 to 2,849,762 _2688 Position (kb) 2846 2847 2848Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2845.982 kb on - strand, within Dshi_2685at 2846.097 kb on + strand, within Dshi_2685at 2846.128 kb on + strand, within Dshi_2685at 2846.222 kb on + strand, within Dshi_2685at 2846.245 kb on - strand, within Dshi_2685at 2846.294 kb on + strand, within Dshi_2685at 2846.567 kb on + strandat 2846.580 kb on - strandat 2846.957 kb on + strandat 2846.964 kb on - strandat 2846.989 kb on + strandat 2847.050 kb on - strand, within Dshi_2686at 2847.056 kb on + strand, within Dshi_2686at 2847.100 kb on + strand, within Dshi_2686at 2847.158 kb on + strand, within Dshi_2686at 2847.171 kb on - strand, within Dshi_2686at 2847.202 kb on - strand, within Dshi_2686at 2847.240 kb on + strand, within Dshi_2686at 2847.240 kb on + strand, within Dshi_2686at 2847.647 kb on - strandat 2847.671 kb on + strand, within Dshi_2687at 2847.672 kb on + strand, within Dshi_2687at 2847.682 kb on + strand, within Dshi_2687at 2847.682 kb on + strand, within Dshi_2687at 2847.682 kb on + strand, within Dshi_2687at 2847.682 kb on + strand, within Dshi_2687at 2847.690 kb on - strand, within Dshi_2687at 2847.726 kb on - strand, within Dshi_2687at 2847.754 kb on + strand, within Dshi_2687at 2847.846 kb on - strand, within Dshi_2687at 2847.954 kb on + strand, within Dshi_2687at 2848.016 kb on - strand, within Dshi_2687at 2848.044 kb on - strandat 2848.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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2,845,982 - Dshi_2685 0.32 -0.7
2,846,097 + Dshi_2685 0.43 -1.6
2,846,128 + Dshi_2685 0.46 -1.2
2,846,222 + Dshi_2685 0.56 -0.5
2,846,245 - Dshi_2685 0.58 -1.0
2,846,294 + Dshi_2685 0.63 -1.0
2,846,567 + +0.4
2,846,580 - -0.6
2,846,957 + +1.0
2,846,964 - -0.5
2,846,989 + -0.3
2,847,050 - Dshi_2686 0.21 -0.4
2,847,056 + Dshi_2686 0.23 +0.1
2,847,100 + Dshi_2686 0.33 -1.1
2,847,158 + Dshi_2686 0.47 -1.8
2,847,171 - Dshi_2686 0.50 -0.8
2,847,202 - Dshi_2686 0.58 -1.3
2,847,240 + Dshi_2686 0.67 -2.4
2,847,240 + Dshi_2686 0.67 +0.1
2,847,647 - -1.7
2,847,671 + Dshi_2687 0.14 -0.4
2,847,672 + Dshi_2687 0.14 -0.2
2,847,682 + Dshi_2687 0.16 +0.0
2,847,682 + Dshi_2687 0.16 +0.3
2,847,682 + Dshi_2687 0.16 -0.9
2,847,682 + Dshi_2687 0.16 -0.5
2,847,690 - Dshi_2687 0.17 -3.8
2,847,726 - Dshi_2687 0.25 -0.5
2,847,754 + Dshi_2687 0.31 -0.4
2,847,846 - Dshi_2687 0.50 -0.6
2,847,954 + Dshi_2687 0.72 -0.5
2,848,016 - Dshi_2687 0.85 +0.0
2,848,044 - -0.8
2,848,051 - -0.5

Or see this region's nucleotide sequence