Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2685 and Dshi_2686 are separated by 302 nucleotides Dshi_2686 and Dshi_2687 are separated by 226 nucleotides Dshi_2687 and Dshi_2688 are separated by 277 nucleotides
Dshi_2685: Dshi_2685 - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq), at 2,845,670 to 2,846,659
_2685
Dshi_2686: Dshi_2686 - UspA domain protein (RefSeq), at 2,846,962 to 2,847,378
_2686
Dshi_2687: Dshi_2687 - pseudoazurin (RefSeq), at 2,847,605 to 2,848,090
_2687
Dshi_2688: Dshi_2688 - cytochrome bd ubiquinol oxidase subunit I (RefSeq), at 2,848,368 to 2,849,762
_2688
Position (kb)
2846
2847
2848 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2845.982 kb on - strand, within Dshi_2685 at 2846.097 kb on + strand, within Dshi_2685 at 2846.128 kb on + strand, within Dshi_2685 at 2846.222 kb on + strand, within Dshi_2685 at 2846.245 kb on - strand, within Dshi_2685 at 2846.294 kb on + strand, within Dshi_2685 at 2846.567 kb on + strand at 2846.580 kb on - strand at 2846.957 kb on + strand at 2846.964 kb on - strand at 2846.989 kb on + strand at 2847.050 kb on - strand, within Dshi_2686 at 2847.056 kb on + strand, within Dshi_2686 at 2847.100 kb on + strand, within Dshi_2686 at 2847.158 kb on + strand, within Dshi_2686 at 2847.171 kb on - strand, within Dshi_2686 at 2847.202 kb on - strand, within Dshi_2686 at 2847.240 kb on + strand, within Dshi_2686 at 2847.240 kb on + strand, within Dshi_2686 at 2847.647 kb on - strand at 2847.671 kb on + strand, within Dshi_2687 at 2847.672 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.690 kb on - strand, within Dshi_2687 at 2847.726 kb on - strand, within Dshi_2687 at 2847.754 kb on + strand, within Dshi_2687 at 2847.846 kb on - strand, within Dshi_2687 at 2847.954 kb on + strand, within Dshi_2687 at 2848.016 kb on - strand, within Dshi_2687 at 2848.044 kb on - strand at 2848.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 2,845,982 - Dshi_2685 0.32 -0.7 2,846,097 + Dshi_2685 0.43 -1.6 2,846,128 + Dshi_2685 0.46 -1.2 2,846,222 + Dshi_2685 0.56 -0.5 2,846,245 - Dshi_2685 0.58 -1.0 2,846,294 + Dshi_2685 0.63 -1.0 2,846,567 + +0.4 2,846,580 - -0.6 2,846,957 + +1.0 2,846,964 - -0.5 2,846,989 + -0.3 2,847,050 - Dshi_2686 0.21 -0.4 2,847,056 + Dshi_2686 0.23 +0.1 2,847,100 + Dshi_2686 0.33 -1.1 2,847,158 + Dshi_2686 0.47 -1.8 2,847,171 - Dshi_2686 0.50 -0.8 2,847,202 - Dshi_2686 0.58 -1.3 2,847,240 + Dshi_2686 0.67 -2.4 2,847,240 + Dshi_2686 0.67 +0.1 2,847,647 - -1.7 2,847,671 + Dshi_2687 0.14 -0.4 2,847,672 + Dshi_2687 0.14 -0.2 2,847,682 + Dshi_2687 0.16 +0.0 2,847,682 + Dshi_2687 0.16 +0.3 2,847,682 + Dshi_2687 0.16 -0.9 2,847,682 + Dshi_2687 0.16 -0.5 2,847,690 - Dshi_2687 0.17 -3.8 2,847,726 - Dshi_2687 0.25 -0.5 2,847,754 + Dshi_2687 0.31 -0.4 2,847,846 - Dshi_2687 0.50 -0.6 2,847,954 + Dshi_2687 0.72 -0.5 2,848,016 - Dshi_2687 0.85 +0.0 2,848,044 - -0.8 2,848,051 - -0.5
Or see this region's nucleotide sequence