Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1931

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxerC and Dshi_1930 are separated by 19 nucleotidesDshi_1930 and Dshi_1931 are separated by 62 nucleotidesDshi_1931 and Dshi_1932 overlap by 4 nucleotidesDshi_1932 and Dshi_1933 are separated by 99 nucleotides Dshi_5002: xerC - hypothetical protein (NCBI), at 2,016,253 to 2,017,179 xerC Dshi_1930: Dshi_1930 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,017,199 to 2,018,038 _1930 Dshi_1931: Dshi_1931 - hypothetical protein (RefSeq), at 2,018,101 to 2,018,352 _1931 Dshi_1932: Dshi_1932 - hypothetical protein (RefSeq), at 2,018,349 to 2,019,218 _1932 Dshi_1933: Dshi_1933 - isoleucyl-tRNA synthetase (RefSeq), at 2,019,318 to 2,022,293 _1933 Position (kb) 2018 2019Strain fitness (log2 ratio) -2 -1 0 1at 2017.121 kb on - strandat 2017.121 kb on - strandat 2017.160 kb on - strandat 2017.173 kb on + strandat 2017.181 kb on - strandat 2017.221 kb on - strandat 2017.573 kb on - strand, within Dshi_1930at 2017.619 kb on + strand, within Dshi_1930at 2017.838 kb on - strand, within Dshi_1930at 2018.082 kb on - strandat 2018.105 kb on - strandat 2018.130 kb on + strand, within Dshi_1931at 2018.341 kb on + strandat 2018.612 kb on - strand, within Dshi_1932at 2018.761 kb on - strand, within Dshi_1932at 2018.815 kb on - strand, within Dshi_1932at 2018.904 kb on + strand, within Dshi_1932at 2019.047 kb on + strand, within Dshi_1932at 2019.122 kb on - strand, within Dshi_1932at 2019.158 kb on - strandat 2019.180 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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2,017,121 - -0.3
2,017,121 - +0.3
2,017,160 - +0.8
2,017,173 + -0.6
2,017,181 - +0.2
2,017,221 - -1.5
2,017,573 - Dshi_1930 0.45 -1.8
2,017,619 + Dshi_1930 0.50 +0.7
2,017,838 - Dshi_1930 0.76 -0.2
2,018,082 - -0.4
2,018,105 - -0.1
2,018,130 + Dshi_1931 0.12 -0.0
2,018,341 + -0.1
2,018,612 - Dshi_1932 0.30 -1.6
2,018,761 - Dshi_1932 0.47 +0.4
2,018,815 - Dshi_1932 0.54 -0.8
2,018,904 + Dshi_1932 0.64 +0.6
2,019,047 + Dshi_1932 0.80 -0.4
2,019,122 - Dshi_1932 0.89 -0.4
2,019,158 - -0.8
2,019,180 + -0.3

Or see this region's nucleotide sequence