Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xerC and Dshi_1930 are separated by 19 nucleotides Dshi_1930 and Dshi_1931 are separated by 62 nucleotides Dshi_1931 and Dshi_1932 overlap by 4 nucleotides Dshi_1932 and Dshi_1933 are separated by 99 nucleotides
Dshi_5002: xerC - hypothetical protein (NCBI), at 2,016,253 to 2,017,179
xerC
Dshi_1930: Dshi_1930 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,017,199 to 2,018,038
_1930
Dshi_1931: Dshi_1931 - hypothetical protein (RefSeq), at 2,018,101 to 2,018,352
_1931
Dshi_1932: Dshi_1932 - hypothetical protein (RefSeq), at 2,018,349 to 2,019,218
_1932
Dshi_1933: Dshi_1933 - isoleucyl-tRNA synthetase (RefSeq), at 2,019,318 to 2,022,293
_1933
Position (kb)
2018
2019 Strain fitness (log2 ratio)
-2
-1
0
1 at 2017.121 kb on - strand at 2017.121 kb on - strand at 2017.160 kb on - strand at 2017.173 kb on + strand at 2017.181 kb on - strand at 2017.221 kb on - strand at 2017.573 kb on - strand, within Dshi_1930 at 2017.619 kb on + strand, within Dshi_1930 at 2017.838 kb on - strand, within Dshi_1930 at 2018.082 kb on - strand at 2018.105 kb on - strand at 2018.130 kb on + strand, within Dshi_1931 at 2018.341 kb on + strand at 2018.612 kb on - strand, within Dshi_1932 at 2018.761 kb on - strand, within Dshi_1932 at 2018.815 kb on - strand, within Dshi_1932 at 2018.904 kb on + strand, within Dshi_1932 at 2019.047 kb on + strand, within Dshi_1932 at 2019.122 kb on - strand, within Dshi_1932 at 2019.158 kb on - strand at 2019.180 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 2,017,121 - -0.3 2,017,121 - +0.3 2,017,160 - +0.8 2,017,173 + -0.6 2,017,181 - +0.2 2,017,221 - -1.5 2,017,573 - Dshi_1930 0.45 -1.8 2,017,619 + Dshi_1930 0.50 +0.7 2,017,838 - Dshi_1930 0.76 -0.2 2,018,082 - -0.4 2,018,105 - -0.1 2,018,130 + Dshi_1931 0.12 -0.0 2,018,341 + -0.1 2,018,612 - Dshi_1932 0.30 -1.6 2,018,761 - Dshi_1932 0.47 +0.4 2,018,815 - Dshi_1932 0.54 -0.8 2,018,904 + Dshi_1932 0.64 +0.6 2,019,047 + Dshi_1932 0.80 -0.4 2,019,122 - Dshi_1932 0.89 -0.4 2,019,158 - -0.8 2,019,180 + -0.3
Or see this region's nucleotide sequence