Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1724 and Dshi_1725 overlap by 1 nucleotides Dshi_1725 and Dshi_1726 are separated by 22 nucleotides Dshi_1726 and Dshi_1727 are separated by 9 nucleotides
Dshi_1724: Dshi_1724 - segregation and condensation protein B (RefSeq), at 1,791,066 to 1,791,755
_1724
Dshi_1725: Dshi_1725 - chromosome segregation and condensation protein ScpA (RefSeq), at 1,791,755 to 1,792,549
_1725
Dshi_1726: Dshi_1726 - Beta-N-acetylhexosaminidase (RefSeq), at 1,792,572 to 1,793,558
_1726
Dshi_1727: Dshi_1727 - Sporulation domain protein (RefSeq), at 1,793,568 to 1,794,512
_1727
Position (kb)
1792
1793
1794 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1791.794 kb on - strand at 1792.108 kb on - strand, within Dshi_1725 at 1792.396 kb on - strand, within Dshi_1725 at 1792.647 kb on - strand at 1792.805 kb on + strand, within Dshi_1726 at 1792.933 kb on + strand, within Dshi_1726 at 1793.122 kb on - strand, within Dshi_1726 at 1793.505 kb on + strand at 1793.587 kb on - strand at 1793.931 kb on - strand, within Dshi_1727 at 1793.966 kb on + strand, within Dshi_1727 at 1794.063 kb on + strand, within Dshi_1727
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 1,791,794 - -0.3 1,792,108 - Dshi_1725 0.44 -1.4 1,792,396 - Dshi_1725 0.81 -3.0 1,792,647 - -0.3 1,792,805 + Dshi_1726 0.24 -0.3 1,792,933 + Dshi_1726 0.37 -0.1 1,793,122 - Dshi_1726 0.56 +0.3 1,793,505 + -1.6 1,793,587 - +0.6 1,793,931 - Dshi_1727 0.38 +0.5 1,793,966 + Dshi_1727 0.42 -1.8 1,794,063 + Dshi_1727 0.52 -0.6
Or see this region's nucleotide sequence