Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1498

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1497 and Dshi_1498 are separated by 61 nucleotidesDshi_1498 and Dshi_1499 are separated by 438 nucleotides Dshi_1497: Dshi_1497 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (RefSeq), at 1,555,798 to 1,556,979 _1497 Dshi_1498: Dshi_1498 - putative membrane-associated zinc metalloprotease (RefSeq), at 1,557,041 to 1,558,378 _1498 Dshi_1499: Dshi_1499 - surface antigen (D15) (RefSeq), at 1,558,817 to 1,561,063 _1499 Position (kb) 1557 1558 1559Strain fitness (log2 ratio) -3 -2 -1 0 1at 1557.259 kb on + strand, within Dshi_1498at 1557.330 kb on - strand, within Dshi_1498at 1557.415 kb on + strand, within Dshi_1498at 1557.577 kb on + strand, within Dshi_1498at 1557.788 kb on + strand, within Dshi_1498at 1557.910 kb on + strand, within Dshi_1498at 1558.125 kb on + strand, within Dshi_1498at 1558.233 kb on + strand, within Dshi_1498at 1558.425 kb on - strandat 1558.447 kb on - strandat 1558.508 kb on + strandat 1558.530 kb on + strandat 1558.538 kb on - strandat 1558.660 kb on + strandat 1558.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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1,557,259 + Dshi_1498 0.16 -1.8
1,557,330 - Dshi_1498 0.22 -2.4
1,557,415 + Dshi_1498 0.28 -1.0
1,557,577 + Dshi_1498 0.40 +0.8
1,557,788 + Dshi_1498 0.56 +0.1
1,557,910 + Dshi_1498 0.65 -2.8
1,558,125 + Dshi_1498 0.81 -2.0
1,558,233 + Dshi_1498 0.89 -1.4
1,558,425 - -0.6
1,558,447 - -0.5
1,558,508 + -0.2
1,558,530 + +0.1
1,558,538 - -0.2
1,558,660 + +1.1
1,558,717 + -1.7

Or see this region's nucleotide sequence