Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0967

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0965 and Dshi_0967 are separated by 668 nucleotidesDshi_0967 and Dshi_0968 are separated by 96 nucleotidesDshi_0968 and Dshi_0969 overlap by 38 nucleotides Dshi_0965: Dshi_0965 - hypothetical protein (RefSeq), at 988,027 to 988,380 _0965 Dshi_0967: Dshi_0967 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 989,049 to 989,933 _0967 Dshi_0968: Dshi_0968 - YCII-related (RefSeq), at 990,030 to 990,485 _0968 Dshi_0969: Dshi_0969 - Mannitol dehydrogenase domain (RefSeq), at 990,448 to 991,947 _0969 Position (kb) 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 988.052 kb on - strandat 988.088 kb on + strand, within Dshi_0965at 988.116 kb on + strand, within Dshi_0965at 988.136 kb on + strand, within Dshi_0965at 988.153 kb on - strand, within Dshi_0965at 988.167 kb on + strand, within Dshi_0965at 988.183 kb on - strand, within Dshi_0965at 988.219 kb on - strand, within Dshi_0965at 988.298 kb on - strand, within Dshi_0965at 988.298 kb on - strand, within Dshi_0965at 988.321 kb on - strand, within Dshi_0965at 988.333 kb on + strand, within Dshi_0965at 988.361 kb on + strandat 988.369 kb on - strandat 988.376 kb on + strandat 988.392 kb on - strandat 988.393 kb on - strandat 988.548 kb on - strandat 988.551 kb on + strandat 988.552 kb on + strandat 988.555 kb on - strandat 988.561 kb on - strandat 988.567 kb on - strandat 988.663 kb on + strandat 988.670 kb on + strandat 988.707 kb on + strandat 988.715 kb on - strandat 988.747 kb on - strandat 988.851 kb on - strandat 988.979 kb on - strandat 988.997 kb on + strandat 989.019 kb on + strandat 989.090 kb on + strandat 989.097 kb on + strandat 989.115 kb on - strandat 989.237 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.264 kb on - strand, within Dshi_0967at 989.264 kb on - strand, within Dshi_0967at 989.322 kb on + strand, within Dshi_0967at 989.332 kb on - strand, within Dshi_0967at 989.419 kb on + strand, within Dshi_0967at 989.439 kb on - strand, within Dshi_0967at 989.552 kb on - strand, within Dshi_0967at 989.605 kb on + strand, within Dshi_0967at 989.623 kb on - strand, within Dshi_0967at 989.636 kb on + strand, within Dshi_0967at 989.636 kb on + strand, within Dshi_0967at 989.636 kb on + strand, within Dshi_0967at 989.644 kb on - strand, within Dshi_0967at 989.688 kb on + strand, within Dshi_0967at 989.693 kb on + strand, within Dshi_0967at 989.696 kb on - strand, within Dshi_0967at 989.696 kb on - strand, within Dshi_0967at 989.696 kb on - strand, within Dshi_0967at 989.696 kb on - strand, within Dshi_0967at 989.750 kb on - strand, within Dshi_0967at 990.089 kb on + strand, within Dshi_0968at 990.097 kb on - strand, within Dshi_0968at 990.241 kb on + strand, within Dshi_0968at 990.293 kb on + strand, within Dshi_0968at 990.316 kb on + strand, within Dshi_0968at 990.331 kb on + strand, within Dshi_0968at 990.366 kb on + strand, within Dshi_0968at 990.478 kb on + strandat 990.523 kb on + strandat 990.742 kb on + strand, within Dshi_0969

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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988,052 - -0.3
988,088 + Dshi_0965 0.17 -0.3
988,116 + Dshi_0965 0.25 +0.0
988,136 + Dshi_0965 0.31 +0.8
988,153 - Dshi_0965 0.36 +0.1
988,167 + Dshi_0965 0.40 +2.5
988,183 - Dshi_0965 0.44 +0.3
988,219 - Dshi_0965 0.54 -0.1
988,298 - Dshi_0965 0.77 +0.2
988,298 - Dshi_0965 0.77 -2.2
988,321 - Dshi_0965 0.83 +1.0
988,333 + Dshi_0965 0.86 +0.3
988,361 + -0.6
988,369 - +2.7
988,376 + +0.0
988,392 - +0.5
988,393 - +0.6
988,548 - -0.5
988,551 + -1.1
988,552 + -1.0
988,555 - +0.9
988,561 - +0.4
988,567 - +0.5
988,663 + -0.1
988,670 + +0.0
988,707 + -1.6
988,715 - +0.3
988,747 - -1.1
988,851 - -0.1
988,979 - -0.0
988,997 + -0.3
989,019 + +0.4
989,090 + -1.5
989,097 + -2.7
989,115 - +1.2
989,237 + Dshi_0967 0.21 +0.3
989,256 + Dshi_0967 0.23 -0.8
989,256 + Dshi_0967 0.23 -0.0
989,256 + Dshi_0967 0.23 +0.0
989,256 + Dshi_0967 0.23 -0.9
989,264 - Dshi_0967 0.24 +0.2
989,264 - Dshi_0967 0.24 +0.2
989,322 + Dshi_0967 0.31 -0.2
989,332 - Dshi_0967 0.32 -0.6
989,419 + Dshi_0967 0.42 +0.1
989,439 - Dshi_0967 0.44 -0.5
989,552 - Dshi_0967 0.57 -0.2
989,605 + Dshi_0967 0.63 -1.6
989,623 - Dshi_0967 0.65 -2.7
989,636 + Dshi_0967 0.66 -0.9
989,636 + Dshi_0967 0.66 +0.4
989,636 + Dshi_0967 0.66 -0.6
989,644 - Dshi_0967 0.67 +0.2
989,688 + Dshi_0967 0.72 -0.2
989,693 + Dshi_0967 0.73 +0.3
989,696 - Dshi_0967 0.73 +0.4
989,696 - Dshi_0967 0.73 -0.8
989,696 - Dshi_0967 0.73 +0.7
989,696 - Dshi_0967 0.73 -1.0
989,750 - Dshi_0967 0.79 +0.3
990,089 + Dshi_0968 0.13 -0.2
990,097 - Dshi_0968 0.15 +0.5
990,241 + Dshi_0968 0.46 +0.5
990,293 + Dshi_0968 0.58 +0.4
990,316 + Dshi_0968 0.63 -0.6
990,331 + Dshi_0968 0.66 -0.4
990,366 + Dshi_0968 0.74 -3.3
990,478 + +0.3
990,523 + +1.3
990,742 + Dshi_0969 0.20 +1.3

Or see this region's nucleotide sequence