Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0941

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0939 and Dshi_0940 are separated by 109 nucleotidesDshi_0940 and Dshi_0941 are separated by 329 nucleotidesDshi_0941 and Dshi_0942 overlap by 4 nucleotides Dshi_0939: Dshi_0939 - transposase orfA IS5 family element (RefSeq), at 965,791 to 965,877 _0939 Dshi_0940: Dshi_0940 - hypothetical protein (RefSeq), at 965,987 to 966,301 _0940 Dshi_0941: Dshi_0941 - hypothetical protein (RefSeq), at 966,631 to 967,482 _0941 Dshi_0942: Dshi_0942 - peptidase M23B (RefSeq), at 967,479 to 968,444 _0942 Position (kb) 966 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1at 965.699 kb on + strandat 965.705 kb on + strandat 965.718 kb on - strandat 965.720 kb on - strandat 965.720 kb on - strandat 965.756 kb on + strandat 965.816 kb on - strand, within Dshi_0939at 965.844 kb on - strand, within Dshi_0939at 965.973 kb on + strandat 965.994 kb on + strandat 966.027 kb on + strand, within Dshi_0940at 966.027 kb on + strand, within Dshi_0940at 966.032 kb on + strand, within Dshi_0940at 966.034 kb on + strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.047 kb on - strand, within Dshi_0940at 966.057 kb on - strand, within Dshi_0940at 966.057 kb on - strand, within Dshi_0940at 966.063 kb on + strand, within Dshi_0940at 966.094 kb on - strand, within Dshi_0940at 966.094 kb on - strand, within Dshi_0940at 966.152 kb on + strand, within Dshi_0940at 966.161 kb on - strand, within Dshi_0940at 966.169 kb on - strand, within Dshi_0940at 966.203 kb on + strand, within Dshi_0940at 966.211 kb on - strand, within Dshi_0940at 966.212 kb on - strand, within Dshi_0940at 966.281 kb on + strandat 966.304 kb on - strandat 966.339 kb on + strandat 966.347 kb on - strandat 966.401 kb on - strandat 966.419 kb on - strandat 966.424 kb on + strandat 966.432 kb on - strandat 966.466 kb on - strandat 966.484 kb on + strandat 966.491 kb on - strandat 966.516 kb on - strandat 966.581 kb on + strandat 966.589 kb on - strandat 966.653 kb on + strandat 966.657 kb on + strandat 966.682 kb on - strandat 966.687 kb on - strandat 966.691 kb on - strandat 966.861 kb on - strand, within Dshi_0941at 966.861 kb on - strand, within Dshi_0941at 966.861 kb on - strand, within Dshi_0941at 966.861 kb on - strand, within Dshi_0941at 966.863 kb on + strand, within Dshi_0941at 966.899 kb on - strand, within Dshi_0941at 966.935 kb on + strand, within Dshi_0941at 966.972 kb on - strand, within Dshi_0941at 967.129 kb on + strand, within Dshi_0941at 967.251 kb on + strand, within Dshi_0941at 967.332 kb on + strand, within Dshi_0941at 967.399 kb on + strandat 967.541 kb on + strandat 967.575 kb on - strandat 967.708 kb on + strand, within Dshi_0942at 967.708 kb on + strand, within Dshi_0942at 967.713 kb on + strand, within Dshi_0942at 967.751 kb on + strand, within Dshi_0942at 967.858 kb on + strand, within Dshi_0942at 967.879 kb on + strand, within Dshi_0942at 967.879 kb on + strand, within Dshi_0942at 967.889 kb on + strand, within Dshi_0942at 967.936 kb on + strand, within Dshi_0942at 967.987 kb on - strand, within Dshi_0942at 968.025 kb on + strand, within Dshi_0942at 968.025 kb on + strand, within Dshi_0942at 968.066 kb on + strand, within Dshi_0942at 968.198 kb on + strand, within Dshi_0942at 968.347 kb on - strand, within Dshi_0942

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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965,699 + -0.8
965,705 + -0.4
965,718 - +0.7
965,720 - +0.4
965,720 - +0.2
965,756 + -0.6
965,816 - Dshi_0939 0.29 -0.3
965,844 - Dshi_0939 0.61 -0.5
965,973 + -0.5
965,994 + -2.4
966,027 + Dshi_0940 0.13 +0.5
966,027 + Dshi_0940 0.13 -1.5
966,032 + Dshi_0940 0.14 +0.3
966,034 + Dshi_0940 0.15 +1.0
966,042 - Dshi_0940 0.17 -1.0
966,042 - Dshi_0940 0.17 -1.5
966,042 - Dshi_0940 0.17 -0.5
966,042 - Dshi_0940 0.17 +1.7
966,042 - Dshi_0940 0.17 -0.7
966,047 - Dshi_0940 0.19 -2.5
966,057 - Dshi_0940 0.22 -0.5
966,057 - Dshi_0940 0.22 +0.0
966,063 + Dshi_0940 0.24 +0.0
966,094 - Dshi_0940 0.34 +1.1
966,094 - Dshi_0940 0.34 -0.0
966,152 + Dshi_0940 0.52 -0.4
966,161 - Dshi_0940 0.55 +0.5
966,169 - Dshi_0940 0.58 +1.3
966,203 + Dshi_0940 0.69 -0.6
966,211 - Dshi_0940 0.71 -1.5
966,212 - Dshi_0940 0.71 -0.5
966,281 + -0.0
966,304 - -0.0
966,339 + -1.1
966,347 - -0.1
966,401 - +0.4
966,419 - +0.5
966,424 + -0.1
966,432 - +0.3
966,466 - -0.5
966,484 + -0.1
966,491 - -0.3
966,516 - -1.0
966,581 + +0.2
966,589 - -0.2
966,653 + +0.3
966,657 + +1.4
966,682 - +0.4
966,687 - -0.5
966,691 - -3.3
966,861 - Dshi_0941 0.27 -0.0
966,861 - Dshi_0941 0.27 -1.5
966,861 - Dshi_0941 0.27 -1.0
966,861 - Dshi_0941 0.27 +0.4
966,863 + Dshi_0941 0.27 -1.4
966,899 - Dshi_0941 0.31 -2.5
966,935 + Dshi_0941 0.36 -0.8
966,972 - Dshi_0941 0.40 -0.8
967,129 + Dshi_0941 0.58 -0.7
967,251 + Dshi_0941 0.73 -0.6
967,332 + Dshi_0941 0.82 +0.2
967,399 + -0.3
967,541 + +0.7
967,575 - +0.1
967,708 + Dshi_0942 0.24 +0.6
967,708 + Dshi_0942 0.24 -0.2
967,713 + Dshi_0942 0.24 -0.2
967,751 + Dshi_0942 0.28 +0.6
967,858 + Dshi_0942 0.39 -0.4
967,879 + Dshi_0942 0.41 +0.2
967,879 + Dshi_0942 0.41 +0.2
967,889 + Dshi_0942 0.42 -0.3
967,936 + Dshi_0942 0.47 -0.1
967,987 - Dshi_0942 0.53 +0.0
968,025 + Dshi_0942 0.57 -2.0
968,025 + Dshi_0942 0.57 -1.2
968,066 + Dshi_0942 0.61 +0.0
968,198 + Dshi_0942 0.74 -0.3
968,347 - Dshi_0942 0.90 -0.6

Or see this region's nucleotide sequence