Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0788 and Dshi_0789 are separated by 3 nucleotides Dshi_0789 and Dshi_0790 are separated by 142 nucleotides
Dshi_0788: Dshi_0788 - Nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (RefSeq), at 793,089 to 794,126
_0788
Dshi_0789: Dshi_0789 - potassium efflux system protein (RefSeq), at 794,130 to 796,142
_0789
Dshi_0790: Dshi_0790 - hypothetical protein (RefSeq), at 796,285 to 798,666
_0790
Position (kb) 794
795
796
797 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 794.122 kb on + strand at 794.372 kb on - strand, within Dshi_0789 at 794.487 kb on - strand, within Dshi_0789 at 794.576 kb on + strand, within Dshi_0789 at 794.581 kb on + strand, within Dshi_0789 at 794.637 kb on - strand, within Dshi_0789 at 794.646 kb on - strand, within Dshi_0789 at 794.647 kb on - strand, within Dshi_0789 at 794.656 kb on - strand, within Dshi_0789 at 794.962 kb on - strand, within Dshi_0789 at 794.977 kb on - strand, within Dshi_0789 at 794.987 kb on - strand, within Dshi_0789 at 795.059 kb on + strand, within Dshi_0789 at 795.085 kb on + strand, within Dshi_0789 at 795.097 kb on + strand, within Dshi_0789 at 795.101 kb on + strand, within Dshi_0789 at 795.207 kb on - strand, within Dshi_0789 at 795.209 kb on - strand, within Dshi_0789 at 795.282 kb on - strand, within Dshi_0789 at 795.346 kb on + strand, within Dshi_0789 at 795.357 kb on - strand, within Dshi_0789 at 795.458 kb on + strand, within Dshi_0789 at 795.466 kb on - strand, within Dshi_0789 at 795.484 kb on - strand, within Dshi_0789 at 795.850 kb on + strand, within Dshi_0789 at 795.850 kb on + strand, within Dshi_0789 at 796.016 kb on - strand at 796.076 kb on - strand at 796.198 kb on - strand at 796.266 kb on + strand at 796.330 kb on + strand at 796.338 kb on - strand at 796.815 kb on - strand, within Dshi_0790 at 796.936 kb on + strand, within Dshi_0790
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 794,122 + -1.4 794,372 - Dshi_0789 0.12 -0.6 794,487 - Dshi_0789 0.18 +0.0 794,576 + Dshi_0789 0.22 -2.5 794,581 + Dshi_0789 0.22 -1.5 794,637 - Dshi_0789 0.25 +0.7 794,646 - Dshi_0789 0.26 -2.0 794,647 - Dshi_0789 0.26 -0.1 794,656 - Dshi_0789 0.26 +1.2 794,962 - Dshi_0789 0.41 -0.1 794,977 - Dshi_0789 0.42 -0.3 794,987 - Dshi_0789 0.43 -0.8 795,059 + Dshi_0789 0.46 -1.1 795,085 + Dshi_0789 0.47 -1.2 795,097 + Dshi_0789 0.48 -2.4 795,101 + Dshi_0789 0.48 +0.8 795,207 - Dshi_0789 0.54 +0.5 795,209 - Dshi_0789 0.54 -0.5 795,282 - Dshi_0789 0.57 +0.1 795,346 + Dshi_0789 0.60 -0.5 795,357 - Dshi_0789 0.61 +0.3 795,458 + Dshi_0789 0.66 -1.7 795,466 - Dshi_0789 0.66 -0.8 795,484 - Dshi_0789 0.67 -0.1 795,850 + Dshi_0789 0.85 -2.5 795,850 + Dshi_0789 0.85 -0.2 796,016 - -0.2 796,076 - -1.4 796,198 - -0.8 796,266 + -2.0 796,330 + -1.3 796,338 - -3.7 796,815 - Dshi_0790 0.22 -3.8 796,936 + Dshi_0790 0.27 -3.1
Or see this region's nucleotide sequence