Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0468 and Dshi_0469 overlap by 4 nucleotides Dshi_0469 and Dshi_0470 are separated by 63 nucleotides Dshi_0470 and Dshi_0471 are separated by 62 nucleotides
Dshi_0468: Dshi_0468 - hypothetical protein (RefSeq), at 454,509 to 455,171
_0468
Dshi_0469: Dshi_0469 - hypothetical protein (RefSeq), at 455,168 to 455,518
_0469
Dshi_0470: Dshi_0470 - Sulphur oxidation protein SoxZ (RefSeq), at 455,582 to 456,454
_0470
Dshi_0471: Dshi_0471 - beta-lactamase domain protein (RefSeq), at 456,517 to 457,557
_0471
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 454.594 kb on + strand, within Dshi_0468 at 454.612 kb on + strand, within Dshi_0468 at 454.621 kb on - strand, within Dshi_0468 at 454.642 kb on + strand, within Dshi_0468 at 454.642 kb on + strand, within Dshi_0468 at 454.676 kb on - strand, within Dshi_0468 at 454.719 kb on + strand, within Dshi_0468 at 454.726 kb on + strand, within Dshi_0468 at 454.760 kb on - strand, within Dshi_0468 at 454.798 kb on - strand, within Dshi_0468 at 454.806 kb on - strand, within Dshi_0468 at 454.814 kb on + strand, within Dshi_0468 at 454.819 kb on + strand, within Dshi_0468 at 454.880 kb on - strand, within Dshi_0468 at 454.884 kb on - strand, within Dshi_0468 at 454.911 kb on - strand, within Dshi_0468 at 454.927 kb on + strand, within Dshi_0468 at 454.984 kb on - strand, within Dshi_0468 at 454.984 kb on - strand, within Dshi_0468 at 455.065 kb on + strand, within Dshi_0468 at 455.073 kb on - strand, within Dshi_0468 at 455.073 kb on - strand, within Dshi_0468 at 455.074 kb on - strand, within Dshi_0468 at 455.074 kb on - strand, within Dshi_0468 at 455.084 kb on - strand, within Dshi_0468 at 455.084 kb on - strand, within Dshi_0468 at 455.102 kb on + strand, within Dshi_0468 at 455.102 kb on + strand, within Dshi_0468 at 455.110 kb on - strand at 455.132 kb on - strand at 455.145 kb on - strand at 455.153 kb on + strand at 455.281 kb on - strand, within Dshi_0469 at 455.287 kb on - strand, within Dshi_0469 at 455.373 kb on - strand, within Dshi_0469 at 455.383 kb on - strand, within Dshi_0469 at 455.413 kb on + strand, within Dshi_0469 at 455.421 kb on - strand, within Dshi_0469 at 455.487 kb on - strand at 455.487 kb on - strand at 455.494 kb on - strand at 455.511 kb on + strand at 455.639 kb on + strand at 455.729 kb on + strand, within Dshi_0470 at 455.763 kb on - strand, within Dshi_0470 at 455.791 kb on + strand, within Dshi_0470 at 455.815 kb on + strand, within Dshi_0470 at 455.815 kb on + strand, within Dshi_0470 at 455.815 kb on + strand, within Dshi_0470 at 455.865 kb on + strand, within Dshi_0470 at 455.908 kb on + strand, within Dshi_0470 at 455.921 kb on - strand, within Dshi_0470 at 456.036 kb on - strand, within Dshi_0470 at 456.043 kb on - strand, within Dshi_0470 at 456.072 kb on + strand, within Dshi_0470 at 456.075 kb on + strand, within Dshi_0470 at 456.082 kb on - strand, within Dshi_0470 at 456.093 kb on - strand, within Dshi_0470 at 456.170 kb on - strand, within Dshi_0470 at 456.190 kb on - strand, within Dshi_0470 at 456.218 kb on - strand, within Dshi_0470 at 456.225 kb on + strand, within Dshi_0470 at 456.261 kb on - strand, within Dshi_0470 at 456.346 kb on - strand, within Dshi_0470 at 456.411 kb on + strand at 456.424 kb on - strand at 456.473 kb on + strand at 456.496 kb on + strand at 456.501 kb on + strand at 456.506 kb on + strand at 456.536 kb on + strand at 456.544 kb on - strand at 456.544 kb on - strand at 456.587 kb on + strand at 456.632 kb on - strand, within Dshi_0471 at 456.653 kb on + strand, within Dshi_0471 at 456.661 kb on - strand, within Dshi_0471 at 456.672 kb on - strand, within Dshi_0471 at 456.696 kb on + strand, within Dshi_0471 at 456.731 kb on - strand, within Dshi_0471 at 456.744 kb on + strand, within Dshi_0471 at 456.893 kb on + strand, within Dshi_0471 at 456.970 kb on + strand, within Dshi_0471 at 456.981 kb on + strand, within Dshi_0471 at 456.988 kb on + strand, within Dshi_0471 at 457.004 kb on + strand, within Dshi_0471 at 457.124 kb on + strand, within Dshi_0471 at 457.132 kb on - strand, within Dshi_0471 at 457.134 kb on + strand, within Dshi_0471 at 457.142 kb on - strand, within Dshi_0471 at 457.169 kb on + strand, within Dshi_0471 at 457.173 kb on + strand, within Dshi_0471 at 457.177 kb on - strand, within Dshi_0471 at 457.248 kb on + strand, within Dshi_0471 at 457.248 kb on + strand, within Dshi_0471 at 457.263 kb on + strand, within Dshi_0471 at 457.291 kb on + strand, within Dshi_0471 at 457.325 kb on + strand, within Dshi_0471 at 457.338 kb on - strand, within Dshi_0471 at 457.351 kb on + strand, within Dshi_0471 at 457.351 kb on + strand, within Dshi_0471 at 457.351 kb on + strand, within Dshi_0471
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 454,594 + Dshi_0468 0.13 -0.9 454,612 + Dshi_0468 0.16 -0.3 454,621 - Dshi_0468 0.17 +0.9 454,642 + Dshi_0468 0.20 -0.0 454,642 + Dshi_0468 0.20 +0.4 454,676 - Dshi_0468 0.25 -0.7 454,719 + Dshi_0468 0.32 +0.8 454,726 + Dshi_0468 0.33 +0.8 454,760 - Dshi_0468 0.38 -0.6 454,798 - Dshi_0468 0.44 -1.0 454,806 - Dshi_0468 0.45 +0.2 454,814 + Dshi_0468 0.46 -0.1 454,819 + Dshi_0468 0.47 -0.6 454,880 - Dshi_0468 0.56 +0.7 454,884 - Dshi_0468 0.57 +0.1 454,911 - Dshi_0468 0.61 -1.6 454,927 + Dshi_0468 0.63 -0.4 454,984 - Dshi_0468 0.72 -1.1 454,984 - Dshi_0468 0.72 +0.5 455,065 + Dshi_0468 0.84 +0.9 455,073 - Dshi_0468 0.85 +0.9 455,073 - Dshi_0468 0.85 +0.2 455,074 - Dshi_0468 0.85 +0.1 455,074 - Dshi_0468 0.85 -0.5 455,084 - Dshi_0468 0.87 -0.0 455,084 - Dshi_0468 0.87 -0.5 455,102 + Dshi_0468 0.89 +0.7 455,102 + Dshi_0468 0.89 +0.3 455,110 - +0.3 455,132 - +0.4 455,145 - -1.2 455,153 + -1.5 455,281 - Dshi_0469 0.32 -2.4 455,287 - Dshi_0469 0.34 +1.5 455,373 - Dshi_0469 0.58 -0.2 455,383 - Dshi_0469 0.61 -0.5 455,413 + Dshi_0469 0.70 -1.0 455,421 - Dshi_0469 0.72 -0.1 455,487 - -0.3 455,487 - +0.0 455,494 - -1.3 455,511 + -0.2 455,639 + -0.4 455,729 + Dshi_0470 0.17 -1.5 455,763 - Dshi_0470 0.21 +0.5 455,791 + Dshi_0470 0.24 +0.9 455,815 + Dshi_0470 0.27 -0.2 455,815 + Dshi_0470 0.27 -0.5 455,815 + Dshi_0470 0.27 -0.4 455,865 + Dshi_0470 0.32 -1.6 455,908 + Dshi_0470 0.37 -2.0 455,921 - Dshi_0470 0.39 +0.0 456,036 - Dshi_0470 0.52 -1.6 456,043 - Dshi_0470 0.53 -0.2 456,072 + Dshi_0470 0.56 +0.3 456,075 + Dshi_0470 0.56 -0.5 456,082 - Dshi_0470 0.57 +1.1 456,093 - Dshi_0470 0.59 -1.2 456,170 - Dshi_0470 0.67 -0.6 456,190 - Dshi_0470 0.70 -0.8 456,218 - Dshi_0470 0.73 -1.6 456,225 + Dshi_0470 0.74 -1.0 456,261 - Dshi_0470 0.78 -0.1 456,346 - Dshi_0470 0.88 -2.1 456,411 + -1.0 456,424 - +0.6 456,473 + -0.3 456,496 + +0.4 456,501 + -1.2 456,506 + -3.2 456,536 + +0.1 456,544 - -0.6 456,544 - +0.1 456,587 + +0.1 456,632 - Dshi_0471 0.11 -1.3 456,653 + Dshi_0471 0.13 +0.3 456,661 - Dshi_0471 0.14 -0.4 456,672 - Dshi_0471 0.15 -0.4 456,696 + Dshi_0471 0.17 -0.1 456,731 - Dshi_0471 0.21 -0.3 456,744 + Dshi_0471 0.22 -0.2 456,893 + Dshi_0471 0.36 -0.2 456,970 + Dshi_0471 0.44 -0.3 456,981 + Dshi_0471 0.45 -0.2 456,988 + Dshi_0471 0.45 -0.4 457,004 + Dshi_0471 0.47 +0.2 457,124 + Dshi_0471 0.58 +1.1 457,132 - Dshi_0471 0.59 -0.7 457,134 + Dshi_0471 0.59 -1.1 457,142 - Dshi_0471 0.60 -0.2 457,169 + Dshi_0471 0.63 -0.2 457,173 + Dshi_0471 0.63 +0.2 457,177 - Dshi_0471 0.63 -0.1 457,248 + Dshi_0471 0.70 -0.3 457,248 + Dshi_0471 0.70 +1.3 457,263 + Dshi_0471 0.72 -1.0 457,291 + Dshi_0471 0.74 +1.0 457,325 + Dshi_0471 0.78 +0.7 457,338 - Dshi_0471 0.79 +0.4 457,351 + Dshi_0471 0.80 +0.1 457,351 + Dshi_0471 0.80 -2.7 457,351 + Dshi_0471 0.80 +0.4
Or see this region's nucleotide sequence