Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0426 and Dshi_0427 are separated by 147 nucleotides Dshi_0427 and Dshi_0428 are separated by 19 nucleotides
Dshi_0426: Dshi_0426 - hypothetical protein (RefSeq), at 418,488 to 418,850
_0426
Dshi_0427: Dshi_0427 - hypothetical protein (RefSeq), at 418,998 to 419,249
_0427
Dshi_0428: Dshi_0428 - Poly-beta-hydroxybutyrate polymerase domain protein (RefSeq), at 419,269 to 421,152
_0428
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 418.075 kb on + strand at 418.083 kb on - strand at 418.090 kb on - strand at 418.103 kb on - strand at 418.139 kb on + strand at 418.158 kb on - strand at 418.225 kb on - strand at 418.263 kb on + strand at 418.377 kb on + strand at 418.450 kb on - strand at 418.533 kb on - strand, within Dshi_0426 at 418.562 kb on + strand, within Dshi_0426 at 418.563 kb on + strand, within Dshi_0426 at 418.654 kb on + strand, within Dshi_0426 at 418.661 kb on - strand, within Dshi_0426 at 418.685 kb on - strand, within Dshi_0426 at 418.695 kb on - strand, within Dshi_0426 at 418.714 kb on - strand, within Dshi_0426 at 418.891 kb on + strand at 418.935 kb on + strand at 418.940 kb on + strand at 418.979 kb on - strand at 419.023 kb on + strand at 419.031 kb on - strand, within Dshi_0427 at 419.047 kb on + strand, within Dshi_0427 at 419.061 kb on + strand, within Dshi_0427 at 419.078 kb on - strand, within Dshi_0427 at 419.107 kb on + strand, within Dshi_0427 at 419.126 kb on + strand, within Dshi_0427 at 419.169 kb on - strand, within Dshi_0427 at 419.261 kb on + strand at 419.306 kb on + strand at 419.334 kb on - strand at 419.357 kb on + strand at 419.358 kb on - strand at 419.528 kb on - strand, within Dshi_0428 at 419.633 kb on + strand, within Dshi_0428 at 419.638 kb on + strand, within Dshi_0428 at 419.643 kb on + strand, within Dshi_0428 at 419.646 kb on - strand, within Dshi_0428 at 419.651 kb on + strand, within Dshi_0428 at 419.760 kb on - strand, within Dshi_0428 at 419.792 kb on + strand, within Dshi_0428 at 419.800 kb on - strand, within Dshi_0428 at 419.814 kb on + strand, within Dshi_0428 at 419.841 kb on + strand, within Dshi_0428 at 419.880 kb on + strand, within Dshi_0428 at 419.961 kb on - strand, within Dshi_0428 at 420.004 kb on - strand, within Dshi_0428 at 420.008 kb on - strand, within Dshi_0428 at 420.008 kb on - strand, within Dshi_0428 at 420.011 kb on + strand, within Dshi_0428 at 420.012 kb on - strand, within Dshi_0428 at 420.087 kb on + strand, within Dshi_0428 at 420.107 kb on + strand, within Dshi_0428 at 420.112 kb on + strand, within Dshi_0428 at 420.198 kb on + strand, within Dshi_0428
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 418,075 + +1.3 418,083 - -0.5 418,090 - +0.4 418,103 - -0.4 418,139 + -0.1 418,158 - -0.4 418,225 - +1.3 418,263 + +0.1 418,377 + +0.0 418,450 - +0.1 418,533 - Dshi_0426 0.12 -1.3 418,562 + Dshi_0426 0.20 +0.2 418,563 + Dshi_0426 0.21 +0.1 418,654 + Dshi_0426 0.46 +0.8 418,661 - Dshi_0426 0.48 -3.4 418,685 - Dshi_0426 0.54 +0.3 418,695 - Dshi_0426 0.57 +0.7 418,714 - Dshi_0426 0.62 -1.0 418,891 + -0.8 418,935 + -0.2 418,940 + -0.1 418,979 - -0.6 419,023 + +0.3 419,031 - Dshi_0427 0.13 -0.5 419,047 + Dshi_0427 0.19 -0.5 419,061 + Dshi_0427 0.25 -0.4 419,078 - Dshi_0427 0.32 -0.5 419,107 + Dshi_0427 0.43 -2.7 419,126 + Dshi_0427 0.51 -2.8 419,169 - Dshi_0427 0.68 -0.0 419,261 + +0.6 419,306 + -0.4 419,334 - -0.5 419,357 + -2.8 419,358 - +0.1 419,528 - Dshi_0428 0.14 +0.1 419,633 + Dshi_0428 0.19 -0.0 419,638 + Dshi_0428 0.20 +0.4 419,643 + Dshi_0428 0.20 -2.3 419,646 - Dshi_0428 0.20 +0.3 419,651 + Dshi_0428 0.20 -0.7 419,760 - Dshi_0428 0.26 +0.1 419,792 + Dshi_0428 0.28 -0.2 419,800 - Dshi_0428 0.28 -0.3 419,814 + Dshi_0428 0.29 +0.4 419,841 + Dshi_0428 0.30 +0.2 419,880 + Dshi_0428 0.32 -0.4 419,961 - Dshi_0428 0.37 +0.0 420,004 - Dshi_0428 0.39 -0.3 420,008 - Dshi_0428 0.39 +0.2 420,008 - Dshi_0428 0.39 +1.2 420,011 + Dshi_0428 0.39 +0.1 420,012 - Dshi_0428 0.39 -0.3 420,087 + Dshi_0428 0.43 -2.0 420,107 + Dshi_0428 0.44 -0.7 420,112 + Dshi_0428 0.45 -0.9 420,198 + Dshi_0428 0.49 +0.1
Or see this region's nucleotide sequence