Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0381 and Dshi_0382 are separated by 156 nucleotides Dshi_0382 and Dshi_0383 are separated by 124 nucleotides Dshi_0383 and Dshi_0384 are separated by 121 nucleotides
Dshi_0381: Dshi_0381 - ABC transporter related (RefSeq), at 363,531 to 364,355
_0381
Dshi_0382: Dshi_0382 - phenylacetate-CoA ligase, putative (RefSeq), at 364,512 to 365,732
_0382
Dshi_0383: Dshi_0383 - hypothetical protein (RefSeq), at 365,857 to 366,321
_0383
Dshi_0384: Dshi_0384 - hypothetical protein (RefSeq), at 366,443 to 366,901
_0384
Position (kb) 364
365
366 Strain fitness (log2 ratio) -2
-1
0
1 at 363.541 kb on - strand at 363.609 kb on + strand at 363.611 kb on + strand at 363.686 kb on - strand, within Dshi_0381 at 363.739 kb on + strand, within Dshi_0381 at 363.811 kb on - strand, within Dshi_0381 at 363.854 kb on - strand, within Dshi_0381 at 363.978 kb on + strand, within Dshi_0381 at 363.986 kb on - strand, within Dshi_0381 at 364.106 kb on - strand, within Dshi_0381 at 364.293 kb on - strand at 364.335 kb on + strand at 364.517 kb on + strand at 364.707 kb on + strand, within Dshi_0382 at 364.797 kb on - strand, within Dshi_0382 at 365.050 kb on + strand, within Dshi_0382 at 365.058 kb on - strand, within Dshi_0382 at 365.080 kb on + strand, within Dshi_0382 at 365.117 kb on + strand, within Dshi_0382 at 365.184 kb on - strand, within Dshi_0382 at 365.517 kb on + strand, within Dshi_0382 at 365.529 kb on - strand, within Dshi_0382 at 365.656 kb on - strand at 365.666 kb on + strand at 365.778 kb on - strand at 365.865 kb on + strand at 365.928 kb on - strand, within Dshi_0383 at 366.028 kb on - strand, within Dshi_0383 at 366.337 kb on + strand at 366.369 kb on + strand at 366.369 kb on + strand at 366.369 kb on + strand at 366.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 363,541 - +0.8 363,609 + -0.8 363,611 + +0.6 363,686 - Dshi_0381 0.19 -0.4 363,739 + Dshi_0381 0.25 -1.2 363,811 - Dshi_0381 0.34 -2.1 363,854 - Dshi_0381 0.39 -0.7 363,978 + Dshi_0381 0.54 +0.4 363,986 - Dshi_0381 0.55 +0.2 364,106 - Dshi_0381 0.70 +0.1 364,293 - -0.9 364,335 + -0.1 364,517 + -0.0 364,707 + Dshi_0382 0.16 +0.5 364,797 - Dshi_0382 0.23 -0.5 365,050 + Dshi_0382 0.44 -0.9 365,058 - Dshi_0382 0.45 -0.6 365,080 + Dshi_0382 0.47 -1.1 365,117 + Dshi_0382 0.50 -0.3 365,184 - Dshi_0382 0.55 -0.3 365,517 + Dshi_0382 0.82 +0.9 365,529 - Dshi_0382 0.83 -0.3 365,656 - -0.4 365,666 + -0.5 365,778 - +0.1 365,865 + -0.9 365,928 - Dshi_0383 0.15 -1.5 366,028 - Dshi_0383 0.37 -1.0 366,337 + +0.8 366,369 + +0.1 366,369 + -0.5 366,369 + -0.0 366,377 - -2.2
Or see this region's nucleotide sequence