Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0228 and Dshi_0229 are separated by 4 nucleotides Dshi_0229 and Dshi_0230 are separated by 346 nucleotides Dshi_0230 and Dshi_0231 are separated by 12 nucleotides Dshi_0231 and Dshi_0232 are separated by 257 nucleotides
Dshi_0228: Dshi_0228 - pyruvate kinase (RefSeq), at 225,543 to 226,991
_0228
Dshi_0229: Dshi_0229 - hypothetical protein (RefSeq), at 226,996 to 227,220
_0229
Dshi_0230: Dshi_0230 - ribosomal protein L35 (RefSeq), at 227,567 to 227,767
_0230
Dshi_0231: Dshi_0231 - ribosomal protein L20 (RefSeq), at 227,780 to 228,145
_0231
Dshi_0232: Dshi_0232 - hypothetical protein (RefSeq), at 228,403 to 229,473
_0232
Position (kb) 227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 226.889 kb on - strand at 227.010 kb on + strand at 227.016 kb on + strand at 227.209 kb on + strand at 227.217 kb on - strand at 227.242 kb on + strand at 227.274 kb on + strand at 227.326 kb on - strand at 227.467 kb on - strand at 228.121 kb on + strand at 228.124 kb on - strand at 228.129 kb on - strand at 228.129 kb on - strand at 228.177 kb on + strand at 228.177 kb on + strand at 228.185 kb on - strand at 228.209 kb on - strand at 228.229 kb on - strand at 228.241 kb on - strand at 228.251 kb on + strand at 228.286 kb on + strand at 228.294 kb on - strand at 228.294 kb on - strand at 228.298 kb on + strand at 228.369 kb on + strand at 228.376 kb on - strand at 228.377 kb on - strand at 228.378 kb on + strand at 228.386 kb on - strand at 228.391 kb on - strand at 228.400 kb on + strand at 228.400 kb on + strand at 228.408 kb on - strand at 228.431 kb on - strand at 228.436 kb on - strand at 228.444 kb on - strand at 228.457 kb on - strand at 228.458 kb on + strand at 228.466 kb on - strand at 228.479 kb on + strand at 228.522 kb on + strand, within Dshi_0232 at 228.528 kb on + strand, within Dshi_0232 at 228.540 kb on + strand, within Dshi_0232 at 228.574 kb on - strand, within Dshi_0232 at 228.610 kb on - strand, within Dshi_0232 at 228.686 kb on + strand, within Dshi_0232 at 228.710 kb on + strand, within Dshi_0232 at 228.726 kb on - strand, within Dshi_0232 at 228.735 kb on + strand, within Dshi_0232
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 226,889 - -1.3 227,010 + -1.2 227,016 + +0.0 227,209 + +0.6 227,217 - -0.1 227,242 + -1.0 227,274 + +0.5 227,326 - -0.8 227,467 - -0.1 228,121 + -1.2 228,124 - -0.0 228,129 - +0.4 228,129 - -0.0 228,177 + -0.7 228,177 + +0.5 228,185 - -3.0 228,209 - -0.5 228,229 - -1.3 228,241 - -0.8 228,251 + +0.2 228,286 + +0.0 228,294 - -0.2 228,294 - -1.7 228,298 + +1.1 228,369 + +0.1 228,376 - +0.2 228,377 - +0.2 228,378 + -0.2 228,386 - +0.0 228,391 - -0.8 228,400 + -0.6 228,400 + +0.7 228,408 - -0.7 228,431 - +0.8 228,436 - +0.1 228,444 - +0.6 228,457 - +0.4 228,458 + -1.4 228,466 - +2.3 228,479 + -0.4 228,522 + Dshi_0232 0.11 +0.0 228,528 + Dshi_0232 0.12 +0.5 228,540 + Dshi_0232 0.13 +1.0 228,574 - Dshi_0232 0.16 -0.2 228,610 - Dshi_0232 0.19 +1.3 228,686 + Dshi_0232 0.26 -0.6 228,710 + Dshi_0232 0.29 +0.4 228,726 - Dshi_0232 0.30 -2.0 228,735 + Dshi_0232 0.31 -2.7
Or see this region's nucleotide sequence