Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0060 and Dshi_0061 are separated by 123 nucleotides Dshi_0061 and Dshi_0062 are separated by 61 nucleotides
Dshi_0060: Dshi_0060 - aminotransferase class I and II (RefSeq), at 59,687 to 60,868
_0060
Dshi_0061: Dshi_0061 - Amidase (RefSeq), at 60,992 to 62,323
_0061
Dshi_0062: Dshi_0062 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 62,385 to 63,650
_0062
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 60.998 kb on - strand at 60.998 kb on - strand at 61.069 kb on + strand at 61.086 kb on + strand at 61.092 kb on + strand at 61.094 kb on - strand at 61.276 kb on + strand, within Dshi_0061 at 61.285 kb on + strand, within Dshi_0061 at 61.293 kb on - strand, within Dshi_0061 at 61.453 kb on + strand, within Dshi_0061 at 61.488 kb on + strand, within Dshi_0061 at 61.652 kb on + strand, within Dshi_0061 at 61.654 kb on + strand, within Dshi_0061 at 61.748 kb on - strand, within Dshi_0061 at 61.775 kb on - strand, within Dshi_0061 at 61.822 kb on + strand, within Dshi_0061 at 61.860 kb on + strand, within Dshi_0061 at 61.920 kb on - strand, within Dshi_0061 at 62.077 kb on + strand, within Dshi_0061 at 62.164 kb on + strand, within Dshi_0061 at 62.254 kb on + strand at 62.292 kb on + strand at 62.395 kb on + strand at 62.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 60,998 - +0.1 60,998 - -0.2 61,069 + +0.6 61,086 + -0.6 61,092 + +0.0 61,094 - -1.6 61,276 + Dshi_0061 0.21 -0.2 61,285 + Dshi_0061 0.22 +0.5 61,293 - Dshi_0061 0.23 +0.2 61,453 + Dshi_0061 0.35 -0.4 61,488 + Dshi_0061 0.37 -1.0 61,652 + Dshi_0061 0.50 -0.2 61,654 + Dshi_0061 0.50 -0.3 61,748 - Dshi_0061 0.57 -1.1 61,775 - Dshi_0061 0.59 -2.4 61,822 + Dshi_0061 0.62 -1.3 61,860 + Dshi_0061 0.65 -3.0 61,920 - Dshi_0061 0.70 -0.5 62,077 + Dshi_0061 0.81 -2.0 62,164 + Dshi_0061 0.88 +0.7 62,254 + -0.6 62,292 + +0.5 62,395 + -1.9 62,419 - -0.3
Or see this region's nucleotide sequence