Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09620 and PGA1_c09630 are separated by 58 nucleotides PGA1_c09630 and PGA1_c09640 overlap by 4 nucleotides PGA1_c09640 and PGA1_c09650 are separated by 183 nucleotides
PGA1_c09620: PGA1_c09620 - UDP-N-acetylmuramate--L-alanine ligase MurC, at 986,891 to 988,288
_c09620
PGA1_c09630: PGA1_c09630 - Protein of unknown function (DUF2484)., at 988,347 to 988,601
_c09630
PGA1_c09640: PGA1_c09640 - Protein of unknown function (DUF2484)., at 988,598 to 988,849
_c09640
PGA1_c09650: PGA1_c09650 - UDP-N-acetylenolpyruvoylglucosamine reductase MurB, at 989,033 to 989,956
_c09650
Position (kb) 988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 988.297 kb on + strand at 988.347 kb on + strand at 988.387 kb on + strand, within PGA1_c09630 at 988.623 kb on + strand at 988.631 kb on - strand, within PGA1_c09640 at 988.648 kb on + strand, within PGA1_c09640 at 988.658 kb on + strand, within PGA1_c09640 at 988.751 kb on + strand, within PGA1_c09640 at 988.771 kb on - strand, within PGA1_c09640 at 988.790 kb on - strand, within PGA1_c09640 at 988.792 kb on + strand, within PGA1_c09640 at 988.800 kb on - strand, within PGA1_c09640 at 988.811 kb on - strand, within PGA1_c09640 at 988.899 kb on + strand at 988.942 kb on + strand at 988.942 kb on + strand at 988.950 kb on - strand at 989.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 988,297 + +0.5 988,347 + +0.6 988,387 + PGA1_c09630 0.16 +0.2 988,623 + -2.8 988,631 - PGA1_c09640 0.13 -0.3 988,648 + PGA1_c09640 0.20 -0.8 988,658 + PGA1_c09640 0.24 -0.3 988,751 + PGA1_c09640 0.61 -0.6 988,771 - PGA1_c09640 0.69 -1.1 988,790 - PGA1_c09640 0.76 +0.8 988,792 + PGA1_c09640 0.77 -1.4 988,800 - PGA1_c09640 0.80 -2.0 988,811 - PGA1_c09640 0.85 -0.5 988,899 + -1.3 988,942 + +0.3 988,942 + +1.5 988,950 - -1.2 989,009 - +0.2
Or see this region's nucleotide sequence