Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09450 and PGA1_c09460 are separated by 355 nucleotides PGA1_c09460 and PGA1_c09470 are separated by 319 nucleotides PGA1_c09470 and PGA1_c09480 are separated by 723 nucleotides
PGA1_c09450: PGA1_c09450 - DNA helicase II UvrD, at 966,842 to 969,205
_c09450
PGA1_c09460: PGA1_c09460 - Uncharacterized conserved small protein, at 969,561 to 969,779
_c09460
PGA1_c09470: PGA1_c09470 - putative ATP-binding protein, at 970,099 to 971,169
_c09470
PGA1_c09480: PGA1_c09480 - putative protein MraZ, at 971,893 to 972,474
_c09480
Position (kb) 970
971
972 Strain fitness (log2 ratio) -2
-1
0
1 at 969.123 kb on + strand at 969.131 kb on - strand at 969.207 kb on - strand at 969.221 kb on + strand at 969.229 kb on - strand at 969.244 kb on + strand at 969.392 kb on + strand at 969.397 kb on + strand at 969.412 kb on + strand at 969.473 kb on + strand at 969.495 kb on + strand at 969.535 kb on - strand at 969.548 kb on - strand at 969.610 kb on - strand, within PGA1_c09460 at 969.610 kb on - strand, within PGA1_c09460 at 969.675 kb on - strand, within PGA1_c09460 at 969.753 kb on - strand, within PGA1_c09460 at 969.790 kb on - strand at 969.809 kb on - strand at 969.827 kb on + strand at 969.827 kb on + strand at 969.835 kb on - strand at 969.924 kb on + strand at 969.932 kb on - strand at 969.959 kb on - strand at 969.982 kb on + strand at 970.022 kb on + strand at 970.030 kb on - strand at 970.071 kb on - strand at 970.198 kb on - strand at 970.198 kb on - strand at 970.203 kb on - strand at 970.291 kb on + strand, within PGA1_c09470 at 970.299 kb on - strand, within PGA1_c09470 at 970.299 kb on - strand, within PGA1_c09470 at 970.299 kb on - strand, within PGA1_c09470 at 970.317 kb on - strand, within PGA1_c09470 at 970.353 kb on + strand, within PGA1_c09470 at 970.358 kb on + strand, within PGA1_c09470 at 970.361 kb on - strand, within PGA1_c09470 at 970.370 kb on + strand, within PGA1_c09470 at 970.378 kb on - strand, within PGA1_c09470 at 970.460 kb on - strand, within PGA1_c09470 at 970.466 kb on - strand, within PGA1_c09470 at 970.509 kb on - strand, within PGA1_c09470 at 970.523 kb on + strand, within PGA1_c09470 at 970.531 kb on - strand, within PGA1_c09470 at 970.571 kb on + strand, within PGA1_c09470 at 970.651 kb on - strand, within PGA1_c09470 at 970.658 kb on + strand, within PGA1_c09470 at 970.674 kb on + strand, within PGA1_c09470 at 970.682 kb on - strand, within PGA1_c09470 at 970.787 kb on - strand, within PGA1_c09470 at 970.824 kb on + strand, within PGA1_c09470 at 970.906 kb on + strand, within PGA1_c09470 at 971.019 kb on - strand, within PGA1_c09470 at 971.116 kb on + strand at 971.124 kb on - strand at 971.138 kb on + strand at 971.143 kb on + strand at 971.148 kb on + strand at 971.151 kb on - strand at 971.172 kb on - strand at 971.200 kb on + strand at 971.237 kb on + strand at 971.237 kb on + strand at 971.237 kb on + strand at 971.287 kb on + strand at 971.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 969,123 + -0.1 969,131 - -1.4 969,207 - -0.8 969,221 + -0.2 969,229 - -1.7 969,244 + -0.0 969,392 + +0.2 969,397 + +0.5 969,412 + +0.7 969,473 + +0.7 969,495 + +0.4 969,535 - -0.2 969,548 - -1.6 969,610 - PGA1_c09460 0.22 +1.5 969,610 - PGA1_c09460 0.22 +0.9 969,675 - PGA1_c09460 0.52 -0.1 969,753 - PGA1_c09460 0.88 +1.1 969,790 - -0.1 969,809 - -0.6 969,827 + -0.4 969,827 + +1.2 969,835 - -0.5 969,924 + -2.6 969,932 - +0.2 969,959 - -0.4 969,982 + +0.8 970,022 + +0.6 970,030 - -1.1 970,071 - -0.5 970,198 - -0.5 970,198 - -1.5 970,203 - -0.3 970,291 + PGA1_c09470 0.18 +1.1 970,299 - PGA1_c09470 0.19 +1.0 970,299 - PGA1_c09470 0.19 -0.5 970,299 - PGA1_c09470 0.19 -2.0 970,317 - PGA1_c09470 0.20 -1.0 970,353 + PGA1_c09470 0.24 -0.4 970,358 + PGA1_c09470 0.24 +0.6 970,361 - PGA1_c09470 0.24 +1.0 970,370 + PGA1_c09470 0.25 +0.7 970,378 - PGA1_c09470 0.26 +0.2 970,460 - PGA1_c09470 0.34 +0.9 970,466 - PGA1_c09470 0.34 +0.6 970,509 - PGA1_c09470 0.38 -0.4 970,523 + PGA1_c09470 0.40 -1.5 970,531 - PGA1_c09470 0.40 -2.1 970,571 + PGA1_c09470 0.44 +1.0 970,651 - PGA1_c09470 0.52 +0.1 970,658 + PGA1_c09470 0.52 -1.1 970,674 + PGA1_c09470 0.54 -0.0 970,682 - PGA1_c09470 0.54 +0.4 970,787 - PGA1_c09470 0.64 -0.4 970,824 + PGA1_c09470 0.68 -0.4 970,906 + PGA1_c09470 0.75 +1.2 971,019 - PGA1_c09470 0.86 +0.0 971,116 + +0.7 971,124 - +0.2 971,138 + -0.6 971,143 + -0.2 971,148 + -0.1 971,151 - -1.0 971,172 - -0.6 971,200 + +0.2 971,237 + +0.2 971,237 + -0.8 971,237 + -2.5 971,287 + -0.1 971,438 + -0.0
Or see this region's nucleotide sequence