Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07750 and PGA1_c07760 are separated by 12 nucleotides PGA1_c07760 and PGA1_c07770 are separated by 12 nucleotides PGA1_c07770 and PGA1_c07780 are separated by 116 nucleotides
PGA1_c07750: PGA1_c07750 - histidinol dehydrogenase HisD, at 801,821 to 803,128
_c07750
PGA1_c07760: PGA1_c07760 - TRAP transporter, subunit DctM, at 803,141 to 804,469
_c07760
PGA1_c07770: PGA1_c07770 - TRAP transporter, subunit DctQ, at 804,482 to 804,994
_c07770
PGA1_c07780: PGA1_c07780 - TRAP transporter, subunit DctP, at 805,111 to 806,256
_c07780
Position (kb) 803
804
805 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 802.142 kb on + strand, within PGA1_c07750 at 802.150 kb on - strand, within PGA1_c07750 at 802.199 kb on - strand, within PGA1_c07750 at 802.520 kb on + strand, within PGA1_c07750 at 802.535 kb on - strand, within PGA1_c07750 at 802.552 kb on + strand, within PGA1_c07750 at 802.560 kb on - strand, within PGA1_c07750 at 802.560 kb on - strand, within PGA1_c07750 at 802.569 kb on - strand, within PGA1_c07750 at 802.584 kb on - strand, within PGA1_c07750 at 802.822 kb on - strand, within PGA1_c07750 at 802.875 kb on - strand, within PGA1_c07750 at 802.911 kb on + strand, within PGA1_c07750 at 802.930 kb on - strand, within PGA1_c07750 at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.069 kb on - strand at 803.069 kb on - strand at 803.069 kb on - strand at 803.069 kb on - strand at 803.080 kb on + strand at 803.088 kb on - strand at 803.124 kb on - strand at 803.137 kb on - strand at 803.195 kb on + strand at 803.198 kb on - strand at 803.216 kb on + strand at 803.216 kb on + strand at 803.224 kb on - strand at 803.290 kb on + strand, within PGA1_c07760 at 803.290 kb on + strand, within PGA1_c07760 at 803.290 kb on + strand, within PGA1_c07760 at 803.290 kb on + strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.334 kb on + strand, within PGA1_c07760 at 803.346 kb on + strand, within PGA1_c07760 at 803.431 kb on + strand, within PGA1_c07760 at 803.433 kb on + strand, within PGA1_c07760 at 803.439 kb on - strand, within PGA1_c07760 at 803.515 kb on + strand, within PGA1_c07760 at 803.543 kb on + strand, within PGA1_c07760 at 803.550 kb on + strand, within PGA1_c07760 at 803.551 kb on - strand, within PGA1_c07760 at 803.563 kb on + strand, within PGA1_c07760 at 803.587 kb on + strand, within PGA1_c07760 at 803.587 kb on + strand, within PGA1_c07760 at 803.595 kb on - strand, within PGA1_c07760 at 803.603 kb on - strand, within PGA1_c07760 at 803.656 kb on + strand, within PGA1_c07760 at 803.672 kb on - strand, within PGA1_c07760 at 803.683 kb on - strand, within PGA1_c07760 at 803.710 kb on + strand, within PGA1_c07760 at 803.713 kb on - strand, within PGA1_c07760 at 803.755 kb on + strand, within PGA1_c07760 at 803.788 kb on + strand, within PGA1_c07760 at 803.815 kb on + strand, within PGA1_c07760 at 803.815 kb on + strand, within PGA1_c07760 at 803.815 kb on + strand, within PGA1_c07760 at 803.823 kb on - strand, within PGA1_c07760 at 803.841 kb on + strand, within PGA1_c07760 at 803.903 kb on + strand, within PGA1_c07760 at 803.906 kb on - strand, within PGA1_c07760 at 803.947 kb on - strand, within PGA1_c07760 at 804.023 kb on + strand, within PGA1_c07760 at 804.126 kb on + strand, within PGA1_c07760 at 804.139 kb on - strand, within PGA1_c07760 at 804.139 kb on - strand, within PGA1_c07760 at 804.173 kb on + strand, within PGA1_c07760 at 804.181 kb on - strand, within PGA1_c07760 at 804.260 kb on + strand, within PGA1_c07760 at 804.265 kb on + strand, within PGA1_c07760 at 804.267 kb on - strand, within PGA1_c07760 at 804.282 kb on - strand, within PGA1_c07760 at 804.345 kb on - strand at 804.436 kb on + strand at 804.442 kb on + strand at 804.531 kb on - strand at 804.552 kb on + strand, within PGA1_c07770 at 804.621 kb on - strand, within PGA1_c07770 at 804.659 kb on + strand, within PGA1_c07770 at 804.659 kb on + strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.711 kb on - strand, within PGA1_c07770 at 804.729 kb on + strand, within PGA1_c07770 at 804.737 kb on - strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.767 kb on - strand, within PGA1_c07770 at 804.824 kb on - strand, within PGA1_c07770 at 804.859 kb on + strand, within PGA1_c07770 at 804.859 kb on + strand, within PGA1_c07770 at 804.881 kb on + strand, within PGA1_c07770 at 804.918 kb on + strand, within PGA1_c07770 at 804.941 kb on + strand, within PGA1_c07770 at 804.941 kb on + strand, within PGA1_c07770 at 804.950 kb on - strand at 805.007 kb on + strand at 805.031 kb on + strand at 805.039 kb on - strand at 805.070 kb on - strand at 805.108 kb on + strand at 805.137 kb on - strand at 805.137 kb on - strand at 805.145 kb on + strand at 805.196 kb on + strand at 805.196 kb on + strand at 805.204 kb on - strand at 805.237 kb on - strand, within PGA1_c07780 at 805.283 kb on + strand, within PGA1_c07780 at 805.286 kb on - strand, within PGA1_c07780 at 805.289 kb on + strand, within PGA1_c07780 at 805.289 kb on + strand, within PGA1_c07780 at 805.297 kb on - strand, within PGA1_c07780 at 805.315 kb on + strand, within PGA1_c07780 at 805.342 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.392 kb on - strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.435 kb on - strand, within PGA1_c07780 at 805.435 kb on - strand, within PGA1_c07780 at 805.449 kb on - strand, within PGA1_c07780 at 805.455 kb on + strand, within PGA1_c07780 at 805.455 kb on + strand, within PGA1_c07780 at 805.456 kb on + strand, within PGA1_c07780 at 805.464 kb on - strand, within PGA1_c07780
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 802,142 + PGA1_c07750 0.25 +0.2 802,150 - PGA1_c07750 0.25 +0.6 802,199 - PGA1_c07750 0.29 +2.2 802,520 + PGA1_c07750 0.53 +0.6 802,535 - PGA1_c07750 0.55 -0.6 802,552 + PGA1_c07750 0.56 -0.6 802,560 - PGA1_c07750 0.56 -0.1 802,560 - PGA1_c07750 0.56 +0.6 802,569 - PGA1_c07750 0.57 +1.6 802,584 - PGA1_c07750 0.58 -1.0 802,822 - PGA1_c07750 0.77 +1.2 802,875 - PGA1_c07750 0.81 +2.2 802,911 + PGA1_c07750 0.83 -0.1 802,930 - PGA1_c07750 0.85 -0.8 803,061 + +0.5 803,061 + -1.9 803,061 + -0.4 803,061 + +0.6 803,061 + +0.2 803,061 + -1.3 803,069 - +1.2 803,069 - +1.2 803,069 - -0.6 803,069 - +0.6 803,080 + -0.3 803,088 - +1.2 803,124 - +1.2 803,137 - -1.4 803,195 + +0.6 803,198 - +0.2 803,216 + +0.3 803,216 + +0.4 803,224 - +3.2 803,290 + PGA1_c07760 0.11 -0.1 803,290 + PGA1_c07760 0.11 +1.4 803,290 + PGA1_c07760 0.11 +1.4 803,290 + PGA1_c07760 0.11 +1.2 803,298 - PGA1_c07760 0.12 -0.4 803,298 - PGA1_c07760 0.12 +2.2 803,298 - PGA1_c07760 0.12 +1.6 803,298 - PGA1_c07760 0.12 +1.2 803,298 - PGA1_c07760 0.12 -1.0 803,334 + PGA1_c07760 0.15 -1.8 803,346 + PGA1_c07760 0.15 -1.2 803,431 + PGA1_c07760 0.22 +0.2 803,433 + PGA1_c07760 0.22 -1.7 803,439 - PGA1_c07760 0.22 -1.3 803,515 + PGA1_c07760 0.28 -0.5 803,543 + PGA1_c07760 0.30 +1.2 803,550 + PGA1_c07760 0.31 +1.4 803,551 - PGA1_c07760 0.31 -1.7 803,563 + PGA1_c07760 0.32 +0.0 803,587 + PGA1_c07760 0.34 +0.8 803,587 + PGA1_c07760 0.34 +2.2 803,595 - PGA1_c07760 0.34 -0.4 803,603 - PGA1_c07760 0.35 -1.7 803,656 + PGA1_c07760 0.39 +1.2 803,672 - PGA1_c07760 0.40 -0.3 803,683 - PGA1_c07760 0.41 -0.8 803,710 + PGA1_c07760 0.43 +0.7 803,713 - PGA1_c07760 0.43 -0.1 803,755 + PGA1_c07760 0.46 +0.4 803,788 + PGA1_c07760 0.49 +0.6 803,815 + PGA1_c07760 0.51 +0.6 803,815 + PGA1_c07760 0.51 +0.2 803,815 + PGA1_c07760 0.51 +1.7 803,823 - PGA1_c07760 0.51 +0.2 803,841 + PGA1_c07760 0.53 +0.6 803,903 + PGA1_c07760 0.57 +2.2 803,906 - PGA1_c07760 0.58 -0.4 803,947 - PGA1_c07760 0.61 +1.2 804,023 + PGA1_c07760 0.66 +0.4 804,126 + PGA1_c07760 0.74 +1.2 804,139 - PGA1_c07760 0.75 +1.3 804,139 - PGA1_c07760 0.75 -0.8 804,173 + PGA1_c07760 0.78 +0.9 804,181 - PGA1_c07760 0.78 -0.4 804,260 + PGA1_c07760 0.84 +1.3 804,265 + PGA1_c07760 0.85 -0.7 804,267 - PGA1_c07760 0.85 -1.0 804,282 - PGA1_c07760 0.86 +0.6 804,345 - -0.4 804,436 + -0.8 804,442 + -1.0 804,531 - +2.2 804,552 + PGA1_c07770 0.14 -1.3 804,621 - PGA1_c07770 0.27 +0.6 804,659 + PGA1_c07770 0.35 -0.0 804,659 + PGA1_c07770 0.35 +0.6 804,667 - PGA1_c07770 0.36 +1.2 804,667 - PGA1_c07770 0.36 +2.2 804,667 - PGA1_c07770 0.36 -1.1 804,667 - PGA1_c07770 0.36 +2.0 804,711 - PGA1_c07770 0.45 +0.6 804,729 + PGA1_c07770 0.48 -0.6 804,737 - PGA1_c07770 0.50 -0.0 804,754 + PGA1_c07770 0.53 +0.6 804,754 + PGA1_c07770 0.53 +1.6 804,754 + PGA1_c07770 0.53 +1.6 804,754 + PGA1_c07770 0.53 -0.4 804,754 + PGA1_c07770 0.53 -2.1 804,754 + PGA1_c07770 0.53 +2.5 804,762 - PGA1_c07770 0.55 +1.2 804,762 - PGA1_c07770 0.55 +1.0 804,762 - PGA1_c07770 0.55 +1.2 804,762 - PGA1_c07770 0.55 +3.2 804,762 - PGA1_c07770 0.55 +1.6 804,762 - PGA1_c07770 0.55 +0.9 804,762 - PGA1_c07770 0.55 +1.0 804,762 - PGA1_c07770 0.55 -0.4 804,762 - PGA1_c07770 0.55 +1.2 804,762 - PGA1_c07770 0.55 +0.6 804,762 - PGA1_c07770 0.55 +0.2 804,762 - PGA1_c07770 0.55 +1.2 804,762 - PGA1_c07770 0.55 -0.4 804,767 - PGA1_c07770 0.56 +0.4 804,824 - PGA1_c07770 0.67 +0.2 804,859 + PGA1_c07770 0.73 +0.2 804,859 + PGA1_c07770 0.73 -0.1 804,881 + PGA1_c07770 0.78 -1.1 804,918 + PGA1_c07770 0.85 +0.4 804,941 + PGA1_c07770 0.89 -0.8 804,941 + PGA1_c07770 0.89 -0.4 804,950 - -0.6 805,007 + -0.6 805,031 + -0.4 805,039 - +0.2 805,070 - +0.4 805,108 + +4.0 805,137 - +0.0 805,137 - +1.2 805,145 + -0.7 805,196 + +0.5 805,196 + -1.4 805,204 - +1.2 805,237 - PGA1_c07780 0.11 +0.6 805,283 + PGA1_c07780 0.15 +0.6 805,286 - PGA1_c07780 0.15 -0.1 805,289 + PGA1_c07780 0.16 -1.0 805,289 + PGA1_c07780 0.16 +0.6 805,297 - PGA1_c07780 0.16 +1.2 805,315 + PGA1_c07780 0.18 +1.2 805,342 + PGA1_c07780 0.20 +1.8 805,381 + PGA1_c07780 0.24 +1.2 805,381 + PGA1_c07780 0.24 -1.5 805,381 + PGA1_c07780 0.24 -0.8 805,381 + PGA1_c07780 0.24 -1.4 805,389 - PGA1_c07780 0.24 +1.2 805,389 - PGA1_c07780 0.24 +0.6 805,389 - PGA1_c07780 0.24 +1.2 805,392 - PGA1_c07780 0.25 -0.1 805,403 + PGA1_c07780 0.25 -1.6 805,403 + PGA1_c07780 0.25 +1.2 805,403 + PGA1_c07780 0.25 -0.6 805,435 - PGA1_c07780 0.28 +1.0 805,435 - PGA1_c07780 0.28 +0.2 805,449 - PGA1_c07780 0.29 -0.8 805,455 + PGA1_c07780 0.30 +0.6 805,455 + PGA1_c07780 0.30 +1.7 805,456 + PGA1_c07780 0.30 -0.1 805,464 - PGA1_c07780 0.31 +1.2
Or see this region's nucleotide sequence