Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_676 and HP15_677 are separated by 3 nucleotides HP15_677 and HP15_678 are separated by 91 nucleotides HP15_678 and HP15_679 are separated by 9 nucleotides HP15_679 and HP15_680 are separated by 76 nucleotides HP15_680 and HP15_681 are separated by 86 nucleotides
HP15_676: HP15_676 - N-acetylmuramoyl-L-alanine amidase, at 695,715 to 696,140
_676
HP15_677: HP15_677 - hypothetical protein, at 696,144 to 696,452
_677
HP15_678: HP15_678 - conserved hypothetical protein, at 696,544 to 697,077
_678
HP15_679: HP15_679 - conserved hypothetical protein, at 697,087 to 697,344
_679
HP15_680: HP15_680 - conserved hypothetical protein, at 697,421 to 697,642
_680
HP15_681: HP15_681 - conserved hypothetical protein, at 697,729 to 698,403
_681
Position (kb) 697
698 Strain fitness (log2 ratio) -1
0
1
2
3 at 696.092 kb on + strand, within HP15_676 at 696.235 kb on + strand, within HP15_677 at 696.292 kb on - strand, within HP15_677 at 696.311 kb on - strand, within HP15_677 at 696.322 kb on - strand, within HP15_677 at 696.412 kb on - strand, within HP15_677 at 696.419 kb on - strand, within HP15_677 at 696.501 kb on + strand at 696.520 kb on - strand at 696.549 kb on + strand at 696.549 kb on + strand at 696.557 kb on - strand at 696.635 kb on + strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.736 kb on - strand, within HP15_678 at 696.784 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.797 kb on - strand, within HP15_678 at 696.914 kb on + strand, within HP15_678 at 696.935 kb on + strand, within HP15_678 at 696.994 kb on + strand, within HP15_678 at 697.021 kb on - strand, within HP15_678 at 697.022 kb on + strand, within HP15_678 at 697.084 kb on + strand at 697.092 kb on - strand at 697.167 kb on - strand, within HP15_679 at 697.245 kb on + strand, within HP15_679 at 697.253 kb on - strand, within HP15_679 at 697.351 kb on - strand at 697.391 kb on + strand at 697.670 kb on + strand at 697.747 kb on - strand at 697.793 kb on - strand at 697.808 kb on - strand, within HP15_681 at 697.844 kb on - strand, within HP15_681 at 697.919 kb on + strand, within HP15_681 at 697.934 kb on - strand, within HP15_681 at 697.955 kb on - strand, within HP15_681 at 697.969 kb on - strand, within HP15_681 at 698.119 kb on - strand, within HP15_681 at 698.153 kb on + strand, within HP15_681 at 698.153 kb on + strand, within HP15_681 at 698.158 kb on + strand, within HP15_681 at 698.165 kb on + strand, within HP15_681 at 698.185 kb on + strand, within HP15_681 at 698.193 kb on - strand, within HP15_681 at 698.213 kb on + strand, within HP15_681 at 698.213 kb on + strand, within HP15_681 at 698.234 kb on + strand, within HP15_681 at 698.242 kb on - strand, within HP15_681 at 698.329 kb on - strand, within HP15_681 at 698.342 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 696,092 + HP15_676 0.88 +0.2 696,235 + HP15_677 0.29 +2.2 696,292 - HP15_677 0.48 +1.2 696,311 - HP15_677 0.54 +0.9 696,322 - HP15_677 0.58 +0.2 696,412 - HP15_677 0.87 +1.1 696,419 - HP15_677 0.89 +0.6 696,501 + -0.8 696,520 - +0.5 696,549 + +0.1 696,549 + +1.0 696,557 - -0.1 696,635 + HP15_678 0.17 +1.8 696,641 - HP15_678 0.18 +0.7 696,641 - HP15_678 0.18 +0.8 696,641 - HP15_678 0.18 +1.2 696,736 - HP15_678 0.36 +1.6 696,784 + HP15_678 0.45 +0.9 696,789 + HP15_678 0.46 +0.9 696,789 + HP15_678 0.46 -1.5 696,789 + HP15_678 0.46 -1.1 696,797 - HP15_678 0.47 -0.1 696,914 + HP15_678 0.69 +0.7 696,935 + HP15_678 0.73 +0.2 696,994 + HP15_678 0.84 +0.1 697,021 - HP15_678 0.89 +0.8 697,022 + HP15_678 0.90 +1.4 697,084 + +1.6 697,092 - +0.8 697,167 - HP15_679 0.31 +2.3 697,245 + HP15_679 0.61 -0.6 697,253 - HP15_679 0.64 +0.3 697,351 - -0.3 697,391 + -1.0 697,670 + +1.0 697,747 - +0.0 697,793 - +1.1 697,808 - HP15_681 0.12 -0.9 697,844 - HP15_681 0.17 +2.8 697,919 + HP15_681 0.28 -0.6 697,934 - HP15_681 0.30 -1.5 697,955 - HP15_681 0.33 +0.1 697,969 - HP15_681 0.36 -1.1 698,119 - HP15_681 0.58 +1.0 698,153 + HP15_681 0.63 +0.1 698,153 + HP15_681 0.63 -0.1 698,158 + HP15_681 0.64 -0.9 698,165 + HP15_681 0.65 +0.5 698,185 + HP15_681 0.68 +0.6 698,193 - HP15_681 0.69 -0.5 698,213 + HP15_681 0.72 +1.2 698,213 + HP15_681 0.72 -0.8 698,234 + HP15_681 0.75 +0.2 698,242 - HP15_681 0.76 -0.5 698,329 - HP15_681 0.89 -0.1 698,342 + +0.1
Or see this region's nucleotide sequence