Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06810 and PGA1_c06820 overlap by 4 nucleotides PGA1_c06820 and PGA1_c06830 are separated by 18 nucleotides PGA1_c06830 and PGA1_c06850 are separated by 271 nucleotides
PGA1_c06810: PGA1_c06810 - putative dipeptide transport ATP-binding protein DppD, at 701,052 to 702,032
_c06810
PGA1_c06820: PGA1_c06820 - dipeptide transport ATP-binding protein DppF, at 702,029 to 702,994
_c06820
PGA1_c06830: PGA1_c06830 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 703,013 to 703,909
_c06830
PGA1_c06850: PGA1_c06850 - putative transposase, at 704,181 to 704,891
_c06850
Position (kb) 703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 702.053 kb on + strand at 702.056 kb on - strand at 702.077 kb on + strand at 702.148 kb on - strand, within PGA1_c06820 at 702.160 kb on + strand, within PGA1_c06820 at 702.168 kb on + strand, within PGA1_c06820 at 702.195 kb on + strand, within PGA1_c06820 at 702.203 kb on - strand, within PGA1_c06820 at 702.283 kb on - strand, within PGA1_c06820 at 702.297 kb on + strand, within PGA1_c06820 at 702.403 kb on - strand, within PGA1_c06820 at 702.412 kb on + strand, within PGA1_c06820 at 702.520 kb on + strand, within PGA1_c06820 at 702.541 kb on + strand, within PGA1_c06820 at 702.611 kb on + strand, within PGA1_c06820 at 702.611 kb on + strand, within PGA1_c06820 at 702.612 kb on - strand, within PGA1_c06820 at 702.619 kb on - strand, within PGA1_c06820 at 702.619 kb on - strand, within PGA1_c06820 at 702.650 kb on - strand, within PGA1_c06820 at 702.669 kb on + strand, within PGA1_c06820 at 702.682 kb on - strand, within PGA1_c06820 at 702.713 kb on - strand, within PGA1_c06820 at 702.760 kb on + strand, within PGA1_c06820 at 702.778 kb on - strand, within PGA1_c06820 at 702.780 kb on + strand, within PGA1_c06820 at 702.828 kb on + strand, within PGA1_c06820 at 702.836 kb on - strand, within PGA1_c06820 at 702.840 kb on + strand, within PGA1_c06820 at 702.871 kb on - strand, within PGA1_c06820 at 702.923 kb on - strand at 702.925 kb on + strand at 702.925 kb on + strand at 702.925 kb on + strand at 702.927 kb on + strand at 702.927 kb on + strand at 702.927 kb on + strand at 702.933 kb on - strand at 702.933 kb on - strand at 702.933 kb on - strand at 702.934 kb on + strand at 702.935 kb on - strand at 702.997 kb on - strand at 703.094 kb on + strand at 703.102 kb on + strand at 703.174 kb on + strand, within PGA1_c06830 at 703.185 kb on + strand, within PGA1_c06830 at 703.192 kb on + strand, within PGA1_c06830 at 703.193 kb on - strand, within PGA1_c06830 at 703.262 kb on + strand, within PGA1_c06830 at 703.305 kb on + strand, within PGA1_c06830 at 703.308 kb on + strand, within PGA1_c06830 at 703.313 kb on + strand, within PGA1_c06830 at 703.313 kb on + strand, within PGA1_c06830 at 703.313 kb on + strand, within PGA1_c06830 at 703.313 kb on + strand, within PGA1_c06830 at 703.313 kb on - strand, within PGA1_c06830 at 703.321 kb on - strand, within PGA1_c06830 at 703.321 kb on - strand, within PGA1_c06830 at 703.335 kb on - strand, within PGA1_c06830 at 703.362 kb on + strand, within PGA1_c06830 at 703.411 kb on - strand, within PGA1_c06830 at 703.466 kb on + strand, within PGA1_c06830 at 703.513 kb on + strand, within PGA1_c06830 at 703.540 kb on + strand, within PGA1_c06830 at 703.548 kb on - strand, within PGA1_c06830 at 703.548 kb on - strand, within PGA1_c06830 at 703.568 kb on + strand, within PGA1_c06830 at 703.621 kb on - strand, within PGA1_c06830 at 703.637 kb on + strand, within PGA1_c06830 at 703.756 kb on + strand, within PGA1_c06830 at 703.756 kb on + strand, within PGA1_c06830 at 703.763 kb on + strand, within PGA1_c06830 at 703.781 kb on + strand, within PGA1_c06830 at 703.792 kb on + strand, within PGA1_c06830 at 703.818 kb on - strand, within PGA1_c06830 at 703.891 kb on + strand at 703.891 kb on + strand at 703.892 kb on - strand at 703.899 kb on - strand at 703.908 kb on + strand at 703.953 kb on - strand at 703.962 kb on + strand at 703.970 kb on - strand at 703.985 kb on - strand at 703.992 kb on + strand at 703.992 kb on + strand at 704.000 kb on - strand at 704.000 kb on - strand at 704.024 kb on + strand at 704.032 kb on - strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.093 kb on - strand at 704.115 kb on + strand at 704.131 kb on - strand at 704.165 kb on + strand at 704.165 kb on + strand at 704.171 kb on - strand at 704.171 kb on - strand at 704.173 kb on + strand at 704.188 kb on + strand at 704.188 kb on + strand at 704.209 kb on - strand at 704.247 kb on + strand at 704.247 kb on + strand at 704.255 kb on - strand, within PGA1_c06850 at 704.255 kb on - strand, within PGA1_c06850 at 704.301 kb on + strand, within PGA1_c06850 at 704.309 kb on - strand, within PGA1_c06850 at 704.310 kb on - strand, within PGA1_c06850 at 704.357 kb on + strand, within PGA1_c06850 at 704.360 kb on - strand, within PGA1_c06850 at 704.364 kb on + strand, within PGA1_c06850 at 704.364 kb on + strand, within PGA1_c06850 at 704.364 kb on + strand, within PGA1_c06850 at 704.365 kb on - strand, within PGA1_c06850 at 704.365 kb on - strand, within PGA1_c06850 at 704.404 kb on + strand, within PGA1_c06850 at 704.407 kb on - strand, within PGA1_c06850 at 704.413 kb on - strand, within PGA1_c06850 at 704.413 kb on - strand, within PGA1_c06850 at 704.417 kb on - strand, within PGA1_c06850 at 704.423 kb on - strand, within PGA1_c06850 at 704.423 kb on - strand, within PGA1_c06850 at 704.425 kb on + strand, within PGA1_c06850 at 704.439 kb on + strand, within PGA1_c06850 at 704.454 kb on + strand, within PGA1_c06850 at 704.463 kb on + strand, within PGA1_c06850 at 704.463 kb on + strand, within PGA1_c06850 at 704.495 kb on + strand, within PGA1_c06850 at 704.496 kb on + strand, within PGA1_c06850 at 704.538 kb on - strand, within PGA1_c06850 at 704.549 kb on - strand, within PGA1_c06850 at 704.569 kb on - strand, within PGA1_c06850 at 704.593 kb on + strand, within PGA1_c06850 at 704.593 kb on + strand, within PGA1_c06850 at 704.601 kb on - strand, within PGA1_c06850 at 704.661 kb on + strand, within PGA1_c06850 at 704.781 kb on - strand, within PGA1_c06850 at 704.804 kb on - strand, within PGA1_c06850 at 704.804 kb on - strand, within PGA1_c06850 at 704.809 kb on + strand, within PGA1_c06850 at 704.809 kb on + strand, within PGA1_c06850 at 704.809 kb on + strand, within PGA1_c06850 at 704.843 kb on - strand at 704.850 kb on - strand at 704.862 kb on + strand at 704.862 kb on + strand at 704.870 kb on - strand at 704.870 kb on - strand at 704.870 kb on - strand at 704.889 kb on + strand at 704.890 kb on + strand at 704.897 kb on - strand at 704.898 kb on - strand at 704.898 kb on - strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.908 kb on - strand at 704.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 702,053 + +0.7 702,056 - -1.3 702,077 + -0.7 702,148 - PGA1_c06820 0.12 -0.1 702,160 + PGA1_c06820 0.14 -1.3 702,168 + PGA1_c06820 0.14 -1.1 702,195 + PGA1_c06820 0.17 +0.1 702,203 - PGA1_c06820 0.18 +0.6 702,283 - PGA1_c06820 0.26 -0.9 702,297 + PGA1_c06820 0.28 +1.8 702,403 - PGA1_c06820 0.39 -0.4 702,412 + PGA1_c06820 0.40 +0.9 702,520 + PGA1_c06820 0.51 -0.4 702,541 + PGA1_c06820 0.53 +1.7 702,611 + PGA1_c06820 0.60 +1.1 702,611 + PGA1_c06820 0.60 -0.4 702,612 - PGA1_c06820 0.60 -1.6 702,619 - PGA1_c06820 0.61 +0.6 702,619 - PGA1_c06820 0.61 +1.4 702,650 - PGA1_c06820 0.64 +0.6 702,669 + PGA1_c06820 0.66 +0.6 702,682 - PGA1_c06820 0.68 -1.3 702,713 - PGA1_c06820 0.71 -0.3 702,760 + PGA1_c06820 0.76 +0.3 702,778 - PGA1_c06820 0.78 +2.3 702,780 + PGA1_c06820 0.78 -1.3 702,828 + PGA1_c06820 0.83 +0.9 702,836 - PGA1_c06820 0.84 -0.6 702,840 + PGA1_c06820 0.84 +0.7 702,871 - PGA1_c06820 0.87 -0.4 702,923 - -1.2 702,925 + -0.9 702,925 + -1.1 702,925 + +0.3 702,927 + -0.3 702,927 + +0.6 702,927 + -0.4 702,933 - +0.3 702,933 - -0.3 702,933 - +1.3 702,934 + +0.2 702,935 - +0.7 702,997 - +1.3 703,094 + -0.4 703,102 + -1.3 703,174 + PGA1_c06830 0.18 -1.1 703,185 + PGA1_c06830 0.19 +0.5 703,192 + PGA1_c06830 0.20 -0.7 703,193 - PGA1_c06830 0.20 +0.5 703,262 + PGA1_c06830 0.28 -0.9 703,305 + PGA1_c06830 0.33 +0.7 703,308 + PGA1_c06830 0.33 +0.4 703,313 + PGA1_c06830 0.33 -0.1 703,313 + PGA1_c06830 0.33 -1.2 703,313 + PGA1_c06830 0.33 -1.3 703,313 + PGA1_c06830 0.33 +0.2 703,313 - PGA1_c06830 0.33 +0.8 703,321 - PGA1_c06830 0.34 +0.1 703,321 - PGA1_c06830 0.34 +1.9 703,335 - PGA1_c06830 0.36 +1.1 703,362 + PGA1_c06830 0.39 +0.3 703,411 - PGA1_c06830 0.44 -0.3 703,466 + PGA1_c06830 0.51 +0.8 703,513 + PGA1_c06830 0.56 -1.4 703,540 + PGA1_c06830 0.59 -1.6 703,548 - PGA1_c06830 0.60 +0.5 703,548 - PGA1_c06830 0.60 -1.2 703,568 + PGA1_c06830 0.62 +0.9 703,621 - PGA1_c06830 0.68 -0.6 703,637 + PGA1_c06830 0.70 -0.5 703,756 + PGA1_c06830 0.83 -0.4 703,756 + PGA1_c06830 0.83 +0.7 703,763 + PGA1_c06830 0.84 +0.6 703,781 + PGA1_c06830 0.86 -0.0 703,792 + PGA1_c06830 0.87 +0.3 703,818 - PGA1_c06830 0.90 -0.6 703,891 + -1.1 703,891 + -2.2 703,892 - +0.4 703,899 - -0.7 703,908 + +0.9 703,953 - -0.3 703,962 + -0.6 703,970 - +0.1 703,985 - -0.1 703,992 + -0.7 703,992 + +0.7 704,000 - -0.1 704,000 - -1.2 704,024 + +0.3 704,032 - -0.4 704,080 + +0.3 704,080 + +0.4 704,080 + -1.7 704,080 + -0.6 704,080 + -0.2 704,080 + +0.7 704,080 + -1.5 704,080 + -1.2 704,080 + -2.4 704,080 + -0.2 704,080 + +0.5 704,080 + -0.6 704,088 - +1.9 704,088 - -1.1 704,088 - +1.3 704,088 - -0.0 704,088 - +0.3 704,088 - -0.9 704,088 - +0.3 704,088 - +0.4 704,088 - -0.9 704,093 - -2.9 704,115 + +0.3 704,131 - -0.7 704,165 + +1.5 704,165 + -0.7 704,171 - +0.4 704,171 - +1.5 704,173 + +0.6 704,188 + -0.7 704,188 + -0.9 704,209 - -0.1 704,247 + +0.0 704,247 + -1.7 704,255 - PGA1_c06850 0.10 +0.7 704,255 - PGA1_c06850 0.10 +0.7 704,301 + PGA1_c06850 0.17 +0.7 704,309 - PGA1_c06850 0.18 +0.6 704,310 - PGA1_c06850 0.18 +1.0 704,357 + PGA1_c06850 0.25 -0.8 704,360 - PGA1_c06850 0.25 +0.8 704,364 + PGA1_c06850 0.26 +0.3 704,364 + PGA1_c06850 0.26 +0.7 704,364 + PGA1_c06850 0.26 +0.4 704,365 - PGA1_c06850 0.26 -0.7 704,365 - PGA1_c06850 0.26 -0.6 704,404 + PGA1_c06850 0.31 +0.5 704,407 - PGA1_c06850 0.32 -1.2 704,413 - PGA1_c06850 0.33 +0.2 704,413 - PGA1_c06850 0.33 +0.2 704,417 - PGA1_c06850 0.33 +0.9 704,423 - PGA1_c06850 0.34 -0.8 704,423 - PGA1_c06850 0.34 -0.7 704,425 + PGA1_c06850 0.34 +0.3 704,439 + PGA1_c06850 0.36 +1.9 704,454 + PGA1_c06850 0.38 -0.1 704,463 + PGA1_c06850 0.40 -0.9 704,463 + PGA1_c06850 0.40 -0.0 704,495 + PGA1_c06850 0.44 -0.6 704,496 + PGA1_c06850 0.44 -0.7 704,538 - PGA1_c06850 0.50 +0.4 704,549 - PGA1_c06850 0.52 +1.0 704,569 - PGA1_c06850 0.55 -0.7 704,593 + PGA1_c06850 0.58 -2.2 704,593 + PGA1_c06850 0.58 -0.1 704,601 - PGA1_c06850 0.59 -0.7 704,661 + PGA1_c06850 0.68 -0.2 704,781 - PGA1_c06850 0.84 +0.9 704,804 - PGA1_c06850 0.88 -0.0 704,804 - PGA1_c06850 0.88 -0.6 704,809 + PGA1_c06850 0.88 -0.6 704,809 + PGA1_c06850 0.88 -0.7 704,809 + PGA1_c06850 0.88 -1.3 704,843 - -1.0 704,850 - -2.7 704,862 + +1.3 704,862 + +0.1 704,870 - +0.1 704,870 - -0.9 704,870 - -0.6 704,889 + +0.6 704,890 + +0.6 704,897 - -0.5 704,898 - +1.4 704,898 - -1.3 704,900 + +1.3 704,900 + +0.7 704,900 + -0.1 704,900 + +0.1 704,900 + +1.1 704,900 + -1.0 704,900 + -1.2 704,908 - +0.8 704,908 - +2.4
Or see this region's nucleotide sequence