Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06750 and PGA1_c06760 are separated by 155 nucleotides PGA1_c06760 and PGA1_c06770 are separated by 232 nucleotides
PGA1_c06750: PGA1_c06750 - Putative peptidoglycan binding domain., at 693,634 to 695,295
_c06750
PGA1_c06760: PGA1_c06760 - tRNA-Leu, at 695,451 to 695,537
_c06760
PGA1_c06770: PGA1_c06770 - hypothetical protein, at 695,770 to 696,009
_c06770
Position (kb) 695
696
697 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 694.837 kb on - strand, within PGA1_c06750 at 694.848 kb on + strand, within PGA1_c06750 at 694.848 kb on + strand, within PGA1_c06750 at 694.848 kb on + strand, within PGA1_c06750 at 694.851 kb on - strand, within PGA1_c06750 at 694.855 kb on - strand, within PGA1_c06750 at 694.856 kb on - strand, within PGA1_c06750 at 694.856 kb on - strand, within PGA1_c06750 at 694.869 kb on - strand, within PGA1_c06750 at 694.926 kb on + strand, within PGA1_c06750 at 695.014 kb on + strand, within PGA1_c06750 at 695.014 kb on + strand, within PGA1_c06750 at 695.022 kb on - strand, within PGA1_c06750 at 695.022 kb on - strand, within PGA1_c06750 at 695.030 kb on + strand, within PGA1_c06750 at 695.038 kb on - strand, within PGA1_c06750 at 695.075 kb on - strand, within PGA1_c06750 at 695.079 kb on + strand, within PGA1_c06750 at 695.080 kb on + strand, within PGA1_c06750 at 695.081 kb on - strand, within PGA1_c06750 at 695.110 kb on + strand, within PGA1_c06750 at 695.124 kb on + strand, within PGA1_c06750 at 695.199 kb on + strand at 695.199 kb on + strand at 695.199 kb on + strand at 695.207 kb on - strand at 695.207 kb on - strand at 695.264 kb on + strand at 695.272 kb on + strand at 695.334 kb on + strand at 695.339 kb on + strand at 695.585 kb on - strand at 695.586 kb on + strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.629 kb on - strand at 695.738 kb on - strand at 695.777 kb on + strand at 695.777 kb on + strand at 695.777 kb on + strand at 695.779 kb on - strand at 695.785 kb on + strand at 695.785 kb on + strand at 695.785 kb on - strand at 695.785 kb on - strand at 695.785 kb on - strand at 695.793 kb on - strand at 695.793 kb on - strand at 695.795 kb on + strand, within PGA1_c06770 at 695.795 kb on - strand, within PGA1_c06770 at 695.867 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.944 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.952 kb on - strand, within PGA1_c06770 at 695.952 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 696.067 kb on - strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.082 kb on - strand at 696.104 kb on + strand at 696.172 kb on - strand at 696.186 kb on - strand at 696.227 kb on + strand at 696.262 kb on + strand at 696.295 kb on + strand at 696.295 kb on + strand at 696.302 kb on + strand at 696.302 kb on + strand at 696.302 kb on + strand at 696.303 kb on - strand at 696.303 kb on - strand at 696.338 kb on - strand at 696.352 kb on - strand at 696.374 kb on - strand at 696.438 kb on + strand at 696.479 kb on + strand at 696.492 kb on + strand at 696.492 kb on + strand at 696.495 kb on - strand at 696.500 kb on - strand at 696.500 kb on - strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.550 kb on - strand at 696.575 kb on - strand at 696.594 kb on + strand at 696.596 kb on + strand at 696.598 kb on + strand at 696.598 kb on + strand at 696.602 kb on - strand at 696.604 kb on + strand at 696.606 kb on - strand at 696.606 kb on - strand at 696.675 kb on + strand at 696.721 kb on + strand at 696.727 kb on + strand at 696.727 kb on + strand at 696.729 kb on - strand at 696.735 kb on - strand at 696.737 kb on + strand at 696.796 kb on + strand at 696.804 kb on - strand at 696.817 kb on - strand at 696.853 kb on - strand at 696.855 kb on + strand at 696.855 kb on + strand at 696.855 kb on + strand at 696.863 kb on - strand at 696.901 kb on - strand at 696.912 kb on + strand at 696.912 kb on + strand at 696.920 kb on + strand at 696.922 kb on + strand at 696.969 kb on - strand at 696.999 kb on - strand at 696.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 694,837 - PGA1_c06750 0.72 -0.1 694,848 + PGA1_c06750 0.73 -0.7 694,848 + PGA1_c06750 0.73 +1.3 694,848 + PGA1_c06750 0.73 +1.6 694,851 - PGA1_c06750 0.73 -0.1 694,855 - PGA1_c06750 0.73 -1.2 694,856 - PGA1_c06750 0.74 -0.3 694,856 - PGA1_c06750 0.74 -1.3 694,869 - PGA1_c06750 0.74 -0.4 694,926 + PGA1_c06750 0.78 -0.1 695,014 + PGA1_c06750 0.83 +0.5 695,014 + PGA1_c06750 0.83 -0.5 695,022 - PGA1_c06750 0.84 -0.5 695,022 - PGA1_c06750 0.84 -0.9 695,030 + PGA1_c06750 0.84 -1.3 695,038 - PGA1_c06750 0.84 +0.7 695,075 - PGA1_c06750 0.87 +1.3 695,079 + PGA1_c06750 0.87 +0.9 695,080 + PGA1_c06750 0.87 -1.1 695,081 - PGA1_c06750 0.87 +0.7 695,110 + PGA1_c06750 0.89 -0.5 695,124 + PGA1_c06750 0.90 +0.7 695,199 + -0.1 695,199 + -0.2 695,199 + -0.1 695,207 - +0.5 695,207 - -0.4 695,264 + -0.9 695,272 + +0.1 695,334 + -0.1 695,339 + -0.8 695,585 - +0.3 695,586 + -0.9 695,620 + -1.1 695,620 + -0.3 695,620 + +0.4 695,628 - +1.0 695,628 - -1.2 695,628 - +0.5 695,628 - +2.3 695,628 - -1.8 695,628 - +0.7 695,628 - -0.1 695,628 - -1.7 695,629 - -1.4 695,738 - +0.7 695,777 + +0.9 695,777 + -0.1 695,777 + -0.1 695,779 - +0.3 695,785 + -0.9 695,785 + +2.3 695,785 - +0.8 695,785 - -0.7 695,785 - -1.3 695,793 - +1.8 695,793 - +0.6 695,795 + PGA1_c06770 0.10 -1.2 695,795 - PGA1_c06770 0.10 -0.7 695,867 + PGA1_c06770 0.40 -0.7 695,918 + PGA1_c06770 0.62 -1.7 695,918 + PGA1_c06770 0.62 -1.8 695,918 + PGA1_c06770 0.62 -0.9 695,918 + PGA1_c06770 0.62 -0.1 695,918 + PGA1_c06770 0.62 -0.3 695,918 + PGA1_c06770 0.62 -0.3 695,926 - PGA1_c06770 0.65 +1.9 695,926 - PGA1_c06770 0.65 +0.5 695,926 - PGA1_c06770 0.65 -0.5 695,926 - PGA1_c06770 0.65 -1.4 695,926 - PGA1_c06770 0.65 +0.0 695,944 + PGA1_c06770 0.72 +0.3 695,949 + PGA1_c06770 0.75 +0.3 695,949 + PGA1_c06770 0.75 +0.9 695,949 + PGA1_c06770 0.75 +0.0 695,949 + PGA1_c06770 0.75 -1.0 695,949 + PGA1_c06770 0.75 -1.7 695,949 + PGA1_c06770 0.75 -0.1 695,949 + PGA1_c06770 0.75 -1.4 695,949 + PGA1_c06770 0.75 -1.1 695,949 + PGA1_c06770 0.75 -1.6 695,949 + PGA1_c06770 0.75 +1.0 695,949 + PGA1_c06770 0.75 +0.2 695,949 + PGA1_c06770 0.75 -1.1 695,949 + PGA1_c06770 0.75 -0.9 695,949 + PGA1_c06770 0.75 +0.8 695,949 + PGA1_c06770 0.75 +0.3 695,949 + PGA1_c06770 0.75 -0.9 695,949 + PGA1_c06770 0.75 +0.5 695,952 - PGA1_c06770 0.76 -0.3 695,952 - PGA1_c06770 0.76 +0.7 695,957 - PGA1_c06770 0.78 -0.3 695,957 - PGA1_c06770 0.78 -0.7 695,957 - PGA1_c06770 0.78 -0.9 695,957 - PGA1_c06770 0.78 +1.3 695,957 - PGA1_c06770 0.78 +1.9 696,067 - +0.5 696,069 + -0.5 696,069 + +2.9 696,069 + -0.6 696,069 + -1.3 696,069 + +1.7 696,069 + -1.6 696,069 + -2.1 696,069 + -0.7 696,069 + -2.1 696,077 - -1.7 696,077 - -0.8 696,077 - -0.2 696,077 - +0.3 696,077 - -0.5 696,082 - -1.0 696,104 + +1.1 696,172 - -1.6 696,186 - -1.1 696,227 + -1.7 696,262 + +1.3 696,295 + +1.9 696,295 + -0.3 696,302 + +0.3 696,302 + +1.5 696,302 + -0.2 696,303 - -0.3 696,303 - -0.4 696,338 - -0.7 696,352 - -0.9 696,374 - -0.9 696,438 + +0.3 696,479 + +1.2 696,492 + -1.0 696,492 + +0.0 696,495 - -0.5 696,500 - -1.4 696,500 - +0.4 696,537 + +1.0 696,537 + +1.8 696,537 + -0.1 696,537 + +0.5 696,537 + -1.0 696,537 + +0.2 696,537 + +0.8 696,537 + +0.5 696,545 - -1.3 696,545 - +1.3 696,545 - +2.3 696,545 - +2.9 696,545 - +1.0 696,545 - +1.8 696,545 - +0.1 696,545 - -2.1 696,545 - +0.7 696,550 - -2.1 696,575 - -1.5 696,594 + -2.1 696,596 + -1.1 696,598 + -0.1 696,598 + -0.1 696,602 - +0.3 696,604 + +0.4 696,606 - +0.7 696,606 - -1.8 696,675 + -0.9 696,721 + -0.7 696,727 + -2.7 696,727 + +1.2 696,729 - -0.2 696,735 - -0.1 696,737 + +1.1 696,796 + -0.2 696,804 - +0.8 696,817 - -0.4 696,853 - -1.2 696,855 + -0.9 696,855 + +0.5 696,855 + +0.6 696,863 - -0.6 696,901 - -2.5 696,912 + -1.3 696,912 + -0.7 696,920 + -0.5 696,922 + -2.3 696,969 - +0.5 696,999 - -0.6 696,999 - +0.7
Or see this region's nucleotide sequence