Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06690

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06670 and PGA1_c06680 are separated by 229 nucleotidesPGA1_c06680 and PGA1_c06690 are separated by 33 nucleotidesPGA1_c06690 and PGA1_c06700 are separated by 224 nucleotidesPGA1_c06700 and PGA1_c06710 are separated by 143 nucleotides PGA1_c06670: PGA1_c06670 - carbamoyl-phosphate synthase small chain, at 684,517 to 685,680 _c06670 PGA1_c06680: PGA1_c06680 - Uncharacterized conserved protein, at 685,910 to 686,383 _c06680 PGA1_c06690: PGA1_c06690 - prephenate deydrogenase-like protein, at 686,417 to 687,202 _c06690 PGA1_c06700: PGA1_c06700 - Integral membrane protein, at 687,427 to 687,912 _c06700 PGA1_c06710: PGA1_c06710 - cytochrome c oxidase subunit 1-beta, at 688,056 to 689,729 _c06710 Position (kb) 686 687 688Strain fitness (log2 ratio) -2 -1 0 1 2at 685.440 kb on + strand, within PGA1_c06670at 685.510 kb on - strand, within PGA1_c06670at 685.512 kb on + strand, within PGA1_c06670at 685.520 kb on - strand, within PGA1_c06670at 685.525 kb on - strand, within PGA1_c06670at 685.525 kb on - strand, within PGA1_c06670at 685.532 kb on + strand, within PGA1_c06670at 685.581 kb on - strandat 685.725 kb on - strandat 685.725 kb on - strandat 685.737 kb on + strandat 685.738 kb on + strandat 685.738 kb on + strandat 685.809 kb on + strandat 685.888 kb on - strandat 685.903 kb on - strandat 686.423 kb on - strandat 686.441 kb on + strandat 686.441 kb on + strandat 686.502 kb on - strand, within PGA1_c06690at 686.544 kb on + strand, within PGA1_c06690at 686.547 kb on - strand, within PGA1_c06690at 686.564 kb on - strand, within PGA1_c06690at 686.583 kb on - strand, within PGA1_c06690at 686.607 kb on - strand, within PGA1_c06690at 686.677 kb on - strand, within PGA1_c06690at 686.677 kb on - strand, within PGA1_c06690at 686.683 kb on - strand, within PGA1_c06690at 686.699 kb on + strand, within PGA1_c06690at 686.726 kb on - strand, within PGA1_c06690at 686.726 kb on - strand, within PGA1_c06690at 686.728 kb on + strand, within PGA1_c06690at 686.736 kb on - strand, within PGA1_c06690at 686.736 kb on - strand, within PGA1_c06690at 686.747 kb on + strand, within PGA1_c06690at 686.786 kb on - strand, within PGA1_c06690at 686.838 kb on + strand, within PGA1_c06690at 686.846 kb on + strand, within PGA1_c06690at 686.846 kb on + strand, within PGA1_c06690at 686.851 kb on + strand, within PGA1_c06690at 686.854 kb on - strand, within PGA1_c06690at 686.962 kb on - strand, within PGA1_c06690at 686.975 kb on + strand, within PGA1_c06690at 687.035 kb on - strand, within PGA1_c06690at 687.120 kb on + strand, within PGA1_c06690at 687.127 kb on + strandat 687.169 kb on + strandat 687.177 kb on - strandat 687.177 kb on - strandat 687.177 kb on - strandat 687.182 kb on + strandat 687.192 kb on + strandat 687.192 kb on + strandat 687.217 kb on + strandat 687.257 kb on + strandat 687.265 kb on - strandat 687.288 kb on + strandat 687.325 kb on - strandat 687.325 kb on - strandat 687.364 kb on + strandat 687.372 kb on - strandat 687.372 kb on - strandat 687.392 kb on + strandat 687.426 kb on + strandat 687.480 kb on - strand, within PGA1_c06700at 687.518 kb on + strand, within PGA1_c06700at 687.526 kb on - strand, within PGA1_c06700at 687.528 kb on + strand, within PGA1_c06700at 687.528 kb on + strand, within PGA1_c06700at 687.528 kb on + strand, within PGA1_c06700at 687.536 kb on - strand, within PGA1_c06700at 687.536 kb on - strand, within PGA1_c06700at 687.609 kb on - strand, within PGA1_c06700at 687.609 kb on - strand, within PGA1_c06700at 687.651 kb on + strand, within PGA1_c06700at 687.651 kb on + strand, within PGA1_c06700at 687.651 kb on + strand, within PGA1_c06700at 687.659 kb on - strand, within PGA1_c06700at 687.659 kb on - strand, within PGA1_c06700at 687.739 kb on + strand, within PGA1_c06700at 687.747 kb on - strand, within PGA1_c06700at 687.757 kb on - strand, within PGA1_c06700at 687.764 kb on + strand, within PGA1_c06700at 687.764 kb on - strand, within PGA1_c06700at 687.829 kb on + strand, within PGA1_c06700at 687.829 kb on + strand, within PGA1_c06700at 687.829 kb on + strand, within PGA1_c06700at 687.863 kb on - strand, within PGA1_c06700at 687.878 kb on + strandat 687.878 kb on + strandat 687.926 kb on + strandat 687.942 kb on + strandat 687.950 kb on + strandat 687.950 kb on + strandat 687.950 kb on - strandat 687.950 kb on - strandat 687.955 kb on - strandat 688.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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685,440 + PGA1_c06670 0.79 -0.1
685,510 - PGA1_c06670 0.85 -0.1
685,512 + PGA1_c06670 0.85 -1.5
685,520 - PGA1_c06670 0.86 +0.7
685,525 - PGA1_c06670 0.87 -0.3
685,525 - PGA1_c06670 0.87 +0.7
685,532 + PGA1_c06670 0.87 +0.3
685,581 - -0.3
685,725 - -0.9
685,725 - -2.3
685,737 + +0.9
685,738 + -0.5
685,738 + -0.5
685,809 + +1.4
685,888 - +0.4
685,903 - -1.9
686,423 - +0.6
686,441 + -0.4
686,441 + -1.4
686,502 - PGA1_c06690 0.11 -0.1
686,544 + PGA1_c06690 0.16 -0.5
686,547 - PGA1_c06690 0.17 -0.8
686,564 - PGA1_c06690 0.19 +0.0
686,583 - PGA1_c06690 0.21 -0.7
686,607 - PGA1_c06690 0.24 -0.5
686,677 - PGA1_c06690 0.33 -0.9
686,677 - PGA1_c06690 0.33 -0.6
686,683 - PGA1_c06690 0.34 +1.3
686,699 + PGA1_c06690 0.36 -1.5
686,726 - PGA1_c06690 0.39 +0.7
686,726 - PGA1_c06690 0.39 -2.0
686,728 + PGA1_c06690 0.40 -0.1
686,736 - PGA1_c06690 0.41 +1.9
686,736 - PGA1_c06690 0.41 -1.1
686,747 + PGA1_c06690 0.42 -0.1
686,786 - PGA1_c06690 0.47 -0.7
686,838 + PGA1_c06690 0.54 +1.7
686,846 + PGA1_c06690 0.55 -0.7
686,846 + PGA1_c06690 0.55 +0.3
686,851 + PGA1_c06690 0.55 -1.6
686,854 - PGA1_c06690 0.56 -0.2
686,962 - PGA1_c06690 0.69 +0.1
686,975 + PGA1_c06690 0.71 +0.1
687,035 - PGA1_c06690 0.79 +1.3
687,120 + PGA1_c06690 0.89 -0.7
687,127 + +1.6
687,169 + -0.7
687,177 - -1.0
687,177 - +0.9
687,177 - +1.3
687,182 + -1.4
687,192 + +0.6
687,192 + -1.5
687,217 + +2.3
687,257 + -2.1
687,265 - -1.1
687,288 + +2.3
687,325 - +0.8
687,325 - +0.8
687,364 + -0.9
687,372 - +0.4
687,372 - -0.7
687,392 + -2.4
687,426 + +0.7
687,480 - PGA1_c06700 0.11 +1.5
687,518 + PGA1_c06700 0.19 -0.5
687,526 - PGA1_c06700 0.20 -0.8
687,528 + PGA1_c06700 0.21 +1.9
687,528 + PGA1_c06700 0.21 -2.1
687,528 + PGA1_c06700 0.21 +0.4
687,536 - PGA1_c06700 0.22 -1.1
687,536 - PGA1_c06700 0.22 -0.3
687,609 - PGA1_c06700 0.37 -1.0
687,609 - PGA1_c06700 0.37 +0.0
687,651 + PGA1_c06700 0.46 -2.2
687,651 + PGA1_c06700 0.46 +2.3
687,651 + PGA1_c06700 0.46 -1.1
687,659 - PGA1_c06700 0.48 +0.5
687,659 - PGA1_c06700 0.48 -1.2
687,739 + PGA1_c06700 0.64 -2.3
687,747 - PGA1_c06700 0.66 +0.3
687,757 - PGA1_c06700 0.68 -0.4
687,764 + PGA1_c06700 0.69 -0.3
687,764 - PGA1_c06700 0.69 -1.1
687,829 + PGA1_c06700 0.83 +0.4
687,829 + PGA1_c06700 0.83 +1.1
687,829 + PGA1_c06700 0.83 +0.9
687,863 - PGA1_c06700 0.90 +0.5
687,878 + +0.1
687,878 + -0.3
687,926 + +1.1
687,942 + +1.1
687,950 + +0.7
687,950 + +1.0
687,950 - -1.6
687,950 - +1.3
687,955 - +0.2
688,082 - -0.7

Or see this region's nucleotide sequence